RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 ARHGEF28Q8N1W1 1705 aaKnown RBP23.14■■□□□ 1.3
CHMP4A-207ENST00000533523 HIRIP3Q9BW71 556 aaPredicted RBP23.14■■□□□ 1.29
CHMP4A-207ENST00000533523 UTRNP46939 3433 aa23.14■■□□□ 1.29
CHMP4A-207ENST00000533523 NUP188Q5SRE5 1749 aa23.13■■□□□ 1.29
CHMP4A-207ENST00000533523 SF3B2Q13435 895 aaKnown RBP23.13■■□□□ 1.29
CHMP4A-207ENST00000533523 FAM98CQ17RN3 349 aaKnown RBP23.13■■□□□ 1.29
CHMP4A-207ENST00000533523 EIF3AQ14152 1382 aaKnown RBP23.13■■□□□ 1.29
CHMP4A-207ENST00000533523 MINK1Q8N4C8 1332 aaPredicted RBP23.12■■□□□ 1.29
CHMP4A-207ENST00000533523 R3HDM1Q15032 1099 aaKnown RBP23.12■■□□□ 1.29
CHMP4A-207ENST00000533523 TRAK1Q9UPV9 953 aa23.12■■□□□ 1.29
CHMP4A-207ENST00000533523 A0A0G2JS52 829 aa23.11■■□□□ 1.29
CHMP4A-207ENST00000533523 MYT1Q01538 1121 aa23.11■■□□□ 1.29
CHMP4A-207ENST00000533523 GPRASP1Q5JY77 1395 aa23.1■■□□□ 1.29
CHMP4A-207ENST00000533523 BAG6P46379 1132 aa23.09■■□□□ 1.29
CHMP4A-207ENST00000533523 KDM2AQ9Y2K7 1162 aa23.08■■□□□ 1.29
CHMP4A-207ENST00000533523 PRR36Q9H6K5 1346 aa23.07■■□□□ 1.28
CHMP4A-207ENST00000533523 PHRF1Q9P1Y6 1649 aaKnown RBP23.05■■□□□ 1.28
CHMP4A-207ENST00000533523 EZH2Q15910 746 aaKnown RBP23.05■■□□□ 1.28
CHMP4A-207ENST00000533523 DCAF11Q8TEB1 546 aa23.05■■□□□ 1.28
CHMP4A-207ENST00000533523 BTG4Q9NY30 223 aa23.05■■□□□ 1.28
CHMP4A-207ENST00000533523 SPATA31A5Q5VU36 1347 aa23.04■■□□□ 1.28
CHMP4A-207ENST00000533523 SPATA31A7Q8IWB4 1347 aa23.04■■□□□ 1.28
CHMP4A-207ENST00000533523 WASLO00401 505 aaPredicted RBP23.02■■□□□ 1.28
CHMP4A-207ENST00000533523 NGDNQ8NEJ9 315 aaKnown RBP23.02■■□□□ 1.28
CHMP4A-207ENST00000533523 ATP7BP35670 1465 aa23.02■■□□□ 1.28
CHMP4A-207ENST00000533523 TOPAZ1Q8N9V7 1692 aa23.02■■□□□ 1.28
CHMP4A-207ENST00000533523 CAMTA1Q9Y6Y1 1673 aa23.02■■□□□ 1.28
CHMP4A-207ENST00000533523 PAK3O75914 559 aaPredicted RBP23.01■■□□□ 1.27
CHMP4A-207ENST00000533523 CAMKK2Q96RR4 588 aa23.01■■□□□ 1.27
CHMP4A-207ENST00000533523 KIAA1210Q9ULL0 1709 aa22.96■■□□□ 1.27
CHMP4A-207ENST00000533523 PRDM11Q9NQV5 511 aa22.96■■□□□ 1.27
CHMP4A-207ENST00000533523 SPATA31A1Q5TZJ5 1347 aa22.93■■□□□ 1.26
CHMP4A-207ENST00000533523 TRIM37O94972 964 aa22.93■■□□□ 1.26
CHMP4A-207ENST00000533523 STAC3Q96MF2 364 aa22.93■■□□□ 1.26
CHMP4A-207ENST00000533523 KIAA0232Q92628 1395 aa22.92■■□□□ 1.26
CHMP4A-207ENST00000533523 NUDT16Q96DE0 195 aaKnown RBP22.92■■□□□ 1.26
CHMP4A-207ENST00000533523 LMO7Q8WWI1 1683 aa22.92■■□□□ 1.26
CHMP4A-207ENST00000533523 NRKQ7Z2Y5 1582 aa22.92■■□□□ 1.26
CHMP4A-207ENST00000533523 CASZ1Q86V15 1759 aa22.91■■□□□ 1.26
CHMP4A-207ENST00000533523 PEAK1Q9H792 1746 aa22.91■■□□□ 1.26
CHMP4A-207ENST00000533523 TRIM26Q12899 539 aaPredicted RBP22.9■■□□□ 1.26
CHMP4A-207ENST00000533523 CHRNA2Q15822 529 aa22.89■■□□□ 1.25
CHMP4A-207ENST00000533523 SBF2Q86WG5 1849 aa22.88■■□□□ 1.25
CHMP4A-207ENST00000533523 YY1P25490 414 aa22.88■■□□□ 1.25
CHMP4A-207ENST00000533523 NUTM2GQ5VZR2 741 aa22.88■■□□□ 1.25
CHMP4A-207ENST00000533523 STRN4Q9NRL3 753 aa22.87■■□□□ 1.25
CHMP4A-207ENST00000533523 PARP4Q9UKK3 1724 aaKnown RBP22.86■■□□□ 1.25
CHMP4A-207ENST00000533523 CDK19Q9BWU1 502 aa22.86■■□□□ 1.25
CHMP4A-207ENST00000533523 QRICH2Q9H0J4 1663 aa22.86■■□□□ 1.25
CHMP4A-207ENST00000533523 POLR3AO14802 1390 aaPredicted RBP22.86■■□□□ 1.25
CHMP4A-207ENST00000533523 ZC3H6P61129 1189 aaKnown RBP22.85■■□□□ 1.25
CHMP4A-207ENST00000533523 PARD3Q8TEW0 1356 aa22.84■■□□□ 1.25
CHMP4A-207ENST00000533523 ACEP12821 1306 aa22.83■■□□□ 1.25
CHMP4A-207ENST00000533523 APBA3O96018 575 aa22.83■■□□□ 1.25
CHMP4A-207ENST00000533523 RGPD3A6NKT7 1758 aaPredicted RBP22.83■■□□□ 1.24
CHMP4A-207ENST00000533523 RGPD4Q7Z3J3 1758 aa22.83■■□□□ 1.24
CHMP4A-207ENST00000533523 SSH2Q76I76 1423 aa22.82■■□□□ 1.24
CHMP4A-207ENST00000533523 MYOM1P52179 1685 aa22.82■■□□□ 1.24
CHMP4A-207ENST00000533523 USP35Q9P2H5 1018 aa22.81■■□□□ 1.24
CHMP4A-207ENST00000533523 GOLGB1Q14789 3259 aaKnown RBP22.81■■□□□ 1.24
CHMP4A-207ENST00000533523 FAM196AQ6ZSG2 479 aa22.8■■□□□ 1.24
CHMP4A-207ENST00000533523 CCDC61Q9Y6R9 512 aa22.8■■□□□ 1.24
CHMP4A-207ENST00000533523 LRRC37A3O60309 1634 aa22.79■■□□□ 1.24
CHMP4A-207ENST00000533523 NBPF8Q3BBV2 869 aa22.79■■□□□ 1.24
CHMP4A-207ENST00000533523 WNK3Q9BYP7 1800 aa22.79■■□□□ 1.24
CHMP4A-207ENST00000533523 PPIP5K1Q6PFW1 1433 aa22.78■■□□□ 1.24
CHMP4A-207ENST00000533523 CEP350Q5VT06 3117 aa22.77■■□□□ 1.24
CHMP4A-207ENST00000533523 EVA1CP58658 441 aa22.77■■□□□ 1.24
CHMP4A-207ENST00000533523 ABTB2Q8N961 1025 aa22.77■■□□□ 1.24
CHMP4A-207ENST00000533523 PDGFDQ9GZP0 370 aaPredicted RBP22.77■■□□□ 1.24
CHMP4A-207ENST00000533523 PLEKHG3A1L390 1219 aa22.76■■□□□ 1.23
CHMP4A-207ENST00000533523 SRPK2P78362 688 aaKnown RBP22.76■■□□□ 1.23
CHMP4A-207ENST00000533523 ANO8Q9HCE9 1232 aaPredicted RBP22.76■■□□□ 1.23
CHMP4A-207ENST00000533523 USP19O94966 1318 aa22.76■■□□□ 1.23
CHMP4A-207ENST00000533523 NBPF1Q3BBV0 1214 aa22.75■■□□□ 1.23
CHMP4A-207ENST00000533523 PTF1AQ7RTS3 328 aa22.75■■□□□ 1.23
CHMP4A-207ENST00000533523 CPDO75976 1380 aa22.75■■□□□ 1.23
CHMP4A-207ENST00000533523 LARP1Q6PKG0 1096 aaKnown RBP22.74■■□□□ 1.23
CHMP4A-207ENST00000533523 PCGF6Q9BYE7 350 aa22.74■■□□□ 1.23
CHMP4A-207ENST00000533523 CENPJQ9HC77 1338 aaPredicted RBP22.74■■□□□ 1.23
CHMP4A-207ENST00000533523 NINLQ9Y2I6 1382 aa22.74■■□□□ 1.23
CHMP4A-207ENST00000533523 BARGINQ6ZT62 677 aa22.73■■□□□ 1.23
CHMP4A-207ENST00000533523 PDE3BQ13370 1112 aa22.72■■□□□ 1.23
CHMP4A-207ENST00000533523 COL5A2P05997 1499 aaPredicted RBP22.72■■□□□ 1.23
CHMP4A-207ENST00000533523 TCP11L2Q8N4U5 519 aa22.71■■□□□ 1.23
CHMP4A-207ENST00000533523 CABP2Q9NPB3 220 aa22.71■■□□□ 1.23
CHMP4A-207ENST00000533523 PIK3C2AO00443 1686 aa22.71■■□□□ 1.23
CHMP4A-207ENST00000533523 ZBTB7CA1YPR0 619 aa22.7■■□□□ 1.22
CHMP4A-207ENST00000533523 KCNQ2O43526 872 aa22.7■■□□□ 1.22
CHMP4A-207ENST00000533523 COL18A1P39060 1754 aa22.7■■□□□ 1.22
CHMP4A-207ENST00000533523 NLRP13Q86W25 1043 aa22.69■■□□□ 1.22
CHMP4A-207ENST00000533523 TRPM1Q7Z4N2 1603 aa22.68■■□□□ 1.22
CHMP4A-207ENST00000533523 USP6P35125 1406 aa22.68■■□□□ 1.22
CHMP4A-207ENST00000533523 SPON1Q9HCB6 807 aa22.68■■□□□ 1.22
CHMP4A-207ENST00000533523 SLIT3O75094 1523 aa22.67■■□□□ 1.22
CHMP4A-207ENST00000533523 GCP02774 474 aa22.67■■□□□ 1.22
CHMP4A-207ENST00000533523 AKAP12Q02952 1782 aa22.66■■□□□ 1.22
CHMP4A-207ENST00000533523 RGPD5Q99666 1765 aa22.66■■□□□ 1.22
CHMP4A-207ENST00000533523 CRB1P82279 1406 aa22.65■■□□□ 1.22
CHMP4A-207ENST00000533523 BRD4O60885 1362 aaPredicted RBP22.65■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms