RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 ABCA3Q99758 1704 aa22.11■■□□□ 1.13
CPSF1-211ENST00000533492 RALGAPBQ86X10 1494 aa22.1■■□□□ 1.13
CPSF1-211ENST00000533492 TRIM26Q12899 539 aaPredicted RBP22.1■■□□□ 1.13
CPSF1-211ENST00000533492 CABP2Q9NPB3 220 aa22.1■■□□□ 1.13
CPSF1-211ENST00000533492 ROCK2O75116 1388 aaKnown RBP22.1■■□□□ 1.13
CPSF1-211ENST00000533492 BTG4Q9NY30 223 aa22.08■■□□□ 1.13
CPSF1-211ENST00000533492 POLR3AO14802 1390 aaPredicted RBP22.08■■□□□ 1.12
CPSF1-211ENST00000533492 NWD2Q9ULI1 1742 aa22.08■■□□□ 1.12
CPSF1-211ENST00000533492 NUTM2GQ5VZR2 741 aa22.07■■□□□ 1.12
CPSF1-211ENST00000533492 PLCH1Q4KWH8 1693 aa22.07■■□□□ 1.12
CPSF1-211ENST00000533492 PRDM11Q9NQV5 511 aa22.06■■□□□ 1.12
CPSF1-211ENST00000533492 GLI3P10071 1580 aa22.06■■□□□ 1.12
CPSF1-211ENST00000533492 TRPM1Q7Z4N2 1603 aa22.06■■□□□ 1.12
CPSF1-211ENST00000533492 PPIP5K1Q6PFW1 1433 aa22.06■■□□□ 1.12
CPSF1-211ENST00000533492 QRICH2Q9H0J4 1663 aa22.05■■□□□ 1.12
CPSF1-211ENST00000533492 ABTB2Q8N961 1025 aa22.05■■□□□ 1.12
CPSF1-211ENST00000533492 EVC2Q86UK5 1308 aa22.05■■□□□ 1.12
CPSF1-211ENST00000533492 TOPAZ1Q8N9V7 1692 aa22.04■■□□□ 1.12
CPSF1-211ENST00000533492 SEPT12Q8IYM1 358 aa22.04■■□□□ 1.12
CPSF1-211ENST00000533492 COL14A1Q05707 1796 aaKnown RBP22.02■■□□□ 1.12
CPSF1-211ENST00000533492 A0A0G2JS52 829 aa22.02■■□□□ 1.12
CPSF1-211ENST00000533492 MYT1Q01538 1121 aa22.02■■□□□ 1.12
CPSF1-211ENST00000533492 CABP1Q9NZU7 370 aa22.02■■□□□ 1.12
CPSF1-211ENST00000533492 TONSLQ96HA7 1378 aa22.01■■□□□ 1.11
CPSF1-211ENST00000533492 ONECUT3O60422 494 aaPredicted RBP22.01■■□□□ 1.11
CPSF1-211ENST00000533492 ZC3H6P61129 1189 aaKnown RBP22.01■■□□□ 1.11
CPSF1-211ENST00000533492 CCDC125Q86Z20 511 aa22.01■■□□□ 1.11
CPSF1-211ENST00000533492 KIAA0232Q92628 1395 aa21.99■■□□□ 1.11
CPSF1-211ENST00000533492 CHRNA2Q15822 529 aa21.99■■□□□ 1.11
CPSF1-211ENST00000533492 NLRP13Q86W25 1043 aa21.99■■□□□ 1.11
CPSF1-211ENST00000533492 FAM98CQ17RN3 349 aaKnown RBP21.98■■□□□ 1.11
CPSF1-211ENST00000533492 CARD11Q9BXL7 1154 aa21.98■■□□□ 1.11
CPSF1-211ENST00000533492 CRYBG1Q9Y4K1 1723 aa21.97■■□□□ 1.11
CPSF1-211ENST00000533492 BRD4O60885 1362 aaPredicted RBP21.97■■□□□ 1.11
CPSF1-211ENST00000533492 KRT27Q7Z3Y8 459 aa21.96■■□□□ 1.11
CPSF1-211ENST00000533492 NRAPQ86VF7 1730 aa21.96■■□□□ 1.11
CPSF1-211ENST00000533492 BRWD3Q6RI45 1802 aa21.95■■□□□ 1.1
CPSF1-211ENST00000533492 STRN4Q9NRL3 753 aa21.95■■□□□ 1.1
CPSF1-211ENST00000533492 EVA1CP58658 441 aa21.94■■□□□ 1.1
CPSF1-211ENST00000533492 SPATA31A5Q5VU36 1347 aa21.94■■□□□ 1.1
CPSF1-211ENST00000533492 SPATA31A7Q8IWB4 1347 aa21.94■■□□□ 1.1
CPSF1-211ENST00000533492 PHRF1Q9P1Y6 1649 aaKnown RBP21.94■■□□□ 1.1
CPSF1-211ENST00000533492 NLRP6P59044 892 aa21.93■■□□□ 1.1
CPSF1-211ENST00000533492 ZNF692Q9BU19 519 aaPredicted RBP21.93■■□□□ 1.1
CPSF1-211ENST00000533492 USP6P35125 1406 aa21.92■■□□□ 1.1
CPSF1-211ENST00000533492 GCP02774 474 aa21.92■■□□□ 1.1
CPSF1-211ENST00000533492 SF3B2Q13435 895 aaKnown RBP21.92■■□□□ 1.1
CPSF1-211ENST00000533492 USP19O94966 1318 aa21.91■■□□□ 1.1
CPSF1-211ENST00000533492 EP400Q96L91 3159 aa21.91■■□□□ 1.1
CPSF1-211ENST00000533492 BLMP54132 1417 aaPredicted RBP21.89■■□□□ 1.1
CPSF1-211ENST00000533492 CPDO75976 1380 aa21.88■■□□□ 1.09
CPSF1-211ENST00000533492 SPATA31A1Q5TZJ5 1347 aa21.88■■□□□ 1.09
CPSF1-211ENST00000533492 ZBTB7CA1YPR0 619 aa21.88■■□□□ 1.09
CPSF1-211ENST00000533492 USP35Q9P2H5 1018 aa21.88■■□□□ 1.09
CPSF1-211ENST00000533492 NRKQ7Z2Y5 1582 aa21.87■■□□□ 1.09
CPSF1-211ENST00000533492 SBNO2Q9Y2G9 1366 aa21.87■■□□□ 1.09
CPSF1-211ENST00000533492 ZRANB1Q9UGI0 708 aa21.86■■□□□ 1.09
CPSF1-211ENST00000533492 TTC21BQ7Z4L5 1316 aa21.85■■□□□ 1.09
CPSF1-211ENST00000533492 SSH2Q76I76 1423 aa21.84■■□□□ 1.09
CPSF1-211ENST00000533492 LARP1Q6PKG0 1096 aaKnown RBP21.84■■□□□ 1.09
CPSF1-211ENST00000533492 CAMTA1Q9Y6Y1 1673 aa21.83■■□□□ 1.09
CPSF1-211ENST00000533492 DEFB132Q7Z7B7 95 aa21.83■■□□□ 1.09
CPSF1-211ENST00000533492 TMC1Q8TDI8 760 aa21.83■■□□□ 1.09
CPSF1-211ENST00000533492 KTN1Q86UP2 1357 aaKnown RBP21.83■■□□□ 1.08
CPSF1-211ENST00000533492 TTC21AQ8NDW8 1320 aa21.82■■□□□ 1.08
CPSF1-211ENST00000533492 FAM182BQ5T319 152 aa21.82■■□□□ 1.08
CPSF1-211ENST00000533492 BARGINQ6ZT62 677 aa21.8■■□□□ 1.08
CPSF1-211ENST00000533492 TCP11L2Q8N4U5 519 aa21.8■■□□□ 1.08
CPSF1-211ENST00000533492 KCNH5Q8NCM2 988 aa21.8■■□□□ 1.08
CPSF1-211ENST00000533492 CPSF1Q10570 1443 aaKnown RBP21.8■■□□□ 1.08
CPSF1-211ENST00000533492 AKAP12Q02952 1782 aa21.79■■□□□ 1.08
CPSF1-211ENST00000533492 SOX12O15370 315 aa21.79■■□□□ 1.08
CPSF1-211ENST00000533492 BAG6P46379 1132 aa21.79■■□□□ 1.08
CPSF1-211ENST00000533492 HDGFL2Q7Z4V5 671 aaPredicted RBP21.79■■□□□ 1.08
CPSF1-211ENST00000533492 PIK3C2AO00443 1686 aa21.79■■□□□ 1.08
CPSF1-211ENST00000533492 AATKQ6ZMQ8 1374 aa21.78■■□□□ 1.08
CPSF1-211ENST00000533492 PDE3BQ13370 1112 aa21.78■■□□□ 1.08
CPSF1-211ENST00000533492 SLIT3O75094 1523 aa21.78■■□□□ 1.08
CPSF1-211ENST00000533492 LMO7Q8WWI1 1683 aa21.78■■□□□ 1.08
CPSF1-211ENST00000533492 THSD7AQ9UPZ6 1657 aa21.78■■□□□ 1.08
CPSF1-211ENST00000533492 ST20-MTHFSA0A0A6YYL1 179 aa21.77■■□□□ 1.08
CPSF1-211ENST00000533492 SLC24A1O60721 1099 aa21.77■■□□□ 1.08
CPSF1-211ENST00000533492 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.77■■□□□ 1.08
CPSF1-211ENST00000533492 SLC12A5Q9H2X9 1139 aa21.77■■□□□ 1.08
CPSF1-211ENST00000533492 THRAP3Q9Y2W1 955 aaKnown RBP21.77■■□□□ 1.08
CPSF1-211ENST00000533492 FAM196AQ6ZSG2 479 aa21.76■■□□□ 1.07
CPSF1-211ENST00000533492 PUS7Q96PZ0 661 aaKnown RBP21.76■■□□□ 1.07
CPSF1-211ENST00000533492 COL5A2P05997 1499 aaPredicted RBP21.76■■□□□ 1.07
CPSF1-211ENST00000533492 PCGF6Q9BYE7 350 aa21.75■■□□□ 1.07
CPSF1-211ENST00000533492 TERF2IPQ9NYB0 399 aa21.75■■□□□ 1.07
CPSF1-211ENST00000533492 TOM1L2Q6ZVM7 507 aa21.74■■□□□ 1.07
CPSF1-211ENST00000533492 ARHGEF25Q86VW2 580 aa21.74■■□□□ 1.07
CPSF1-211ENST00000533492 CRB1P82279 1406 aa21.73■■□□□ 1.07
CPSF1-211ENST00000533492 TESK2Q96S53 571 aa21.72■■□□□ 1.07
CPSF1-211ENST00000533492 AXIN2Q9Y2T1 843 aa21.72■■□□□ 1.07
CPSF1-211ENST00000533492 NME9Q86XW9 330 aa21.71■■□□□ 1.07
CPSF1-211ENST00000533492 MON2Q7Z3U7 1717 aa21.71■■□□□ 1.07
CPSF1-211ENST00000533492 TRIM37O94972 964 aa21.7■■□□□ 1.06
CPSF1-211ENST00000533492 CSB-PGBD3P0DP91 1061 aa21.7■■□□□ 1.06
CPSF1-211ENST00000533492 EN1Q05925 392 aaPredicted RBP21.7■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms