RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 SH3D19Q5HYK7 790 aa8.96□□□□□ -0.98
CD44-235ENST00000532339 BAP1Q92560 729 aa8.96□□□□□ -0.98
CD44-235ENST00000532339 FAM117AQ9C073 453 aa8.96□□□□□ -0.98
CD44-235ENST00000532339 J3QL48 77 aa8.95□□□□□ -0.98
CD44-235ENST00000532339 ST8SIA5O15466 376 aa8.95□□□□□ -0.98
CD44-235ENST00000532339 F12P00748 615 aaPredicted RBP8.95□□□□□ -0.98
CD44-235ENST00000532339 LINC01559Q495D7 138 aa8.95□□□□□ -0.98
CD44-235ENST00000532339 RTL5Q5HYW3 569 aaPredicted RBP8.95□□□□□ -0.98
CD44-235ENST00000532339 ZNF511Q8NB15 262 aa8.95□□□□□ -0.98
CD44-235ENST00000532339 AXIN1O15169 862 aa8.94□□□□□ -0.98
CD44-235ENST00000532339 SMCPP49901 116 aaPredicted RBP8.94□□□□□ -0.98
CD44-235ENST00000532339 MAP10Q9P2G4 905 aa8.94□□□□□ -0.98
CD44-235ENST00000532339 PER1O15534 1290 aaPredicted RBP8.93□□□□□ -0.98
CD44-235ENST00000532339 ALDH1A1P00352 501 aa8.93□□□□□ -0.98
CD44-235ENST00000532339 ABCC9O60706 1549 aa8.92□□□□□ -0.98
CD44-235ENST00000532339 PLEKHG3A1L390 1219 aa8.92□□□□□ -0.98
CD44-235ENST00000532339 SIAH2O43255 324 aa8.92□□□□□ -0.98
CD44-235ENST00000532339 VARSP26640 1264 aaKnown RBP8.92□□□□□ -0.98
CD44-235ENST00000532339 ATP1B4Q9UN42 357 aaPredicted RBP8.92□□□□□ -0.98
CD44-235ENST00000532339 ARMC2Q8NEN0 867 aa8.9□□□□□ -0.98
CD44-235ENST00000532339 HPS1Q92902 700 aa8.9□□□□□ -0.98
CD44-235ENST00000532339 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.9□□□□□ -0.98
CD44-235ENST00000532339 WASF2Q9Y6W5 498 aa8.9□□□□□ -0.98
CD44-235ENST00000532339 PROCA1Q8NCQ7 364 aaPredicted RBP8.89□□□□□ -0.99
CD44-235ENST00000532339 NEUROD2Q15784 382 aa8.88□□□□□ -0.99
CD44-235ENST00000532339 MPNDQ8N594 471 aa8.88□□□□□ -0.99
CD44-235ENST00000532339 POTECB2RU33 542 aa8.87□□□□□ -0.99
CD44-235ENST00000532339 PPP2R2DQ66LE6 453 aa8.87□□□□□ -0.99
CD44-235ENST00000532339 FAM174AQ8TBP5 190 aa8.87□□□□□ -0.99
CD44-235ENST00000532339 DACH1Q9UI36 760 aa8.87□□□□□ -0.99
CD44-235ENST00000532339 CTDSPL2Q05D32 466 aa8.86□□□□□ -0.99
CD44-235ENST00000532339 AGERQ15109 404 aa8.86□□□□□ -0.99
CD44-235ENST00000532339 NBPF14Q5TI25 921 aa8.86□□□□□ -0.99
CD44-235ENST00000532339 BPHLQ86WA6 291 aaPredicted RBP8.86□□□□□ -0.99
CD44-235ENST00000532339 FOXJ1Q92949 421 aa8.86□□□□□ -0.99
CD44-235ENST00000532339 TLL2Q9Y6L7 1015 aa8.86□□□□□ -0.99
CD44-235ENST00000532339 GOPCQ9HD26 462 aa8.85□□□□□ -0.99
CD44-235ENST00000532339 TPRNQ4KMQ1 711 aa8.84□□□□□ -0.99
CD44-235ENST00000532339 ATP13A2Q9NQ11 1180 aa8.84□□□□□ -0.99
CD44-235ENST00000532339 GMPR2Q9P2T1 348 aaKnown RBP8.84□□□□□ -0.99
CD44-235ENST00000532339 FBXO31Q5XUX0 539 aaPredicted RBP8.83□□□□□ -1
CD44-235ENST00000532339 GPKOWQ92917 476 aaPredicted RBP eCLIP8.83□□□□□ -1
CD44-235ENST00000532339 AP1G2O75843 785 aa8.82□□□□□ -1
CD44-235ENST00000532339 LRRN4Q8WUT4 740 aa8.82□□□□□ -1
CD44-235ENST00000532339 PCMTD1Q96MG8 357 aaPredicted RBP8.82□□□□□ -1
CD44-235ENST00000532339 CDK15Q96Q40 435 aa8.82□□□□□ -1
CD44-235ENST00000532339 C11orf95C9JLR9 678 aaPredicted RBP8.81□□□□□ -1
CD44-235ENST00000532339 ADH1CP00326 375 aa8.81□□□□□ -1
CD44-235ENST00000532339 BRPF1P55201 1214 aaPredicted RBP8.81□□□□□ -1
CD44-235ENST00000532339 NNTQ13423 1086 aa8.81□□□□□ -1
CD44-235ENST00000532339 C4orf48Q5BLP8 95 aa8.81□□□□□ -1
CD44-235ENST00000532339 IL27Q8NEV9 243 aa8.81□□□□□ -1
CD44-235ENST00000532339 ZNF775Q96BV0 537 aaPredicted RBP8.81□□□□□ -1
CD44-235ENST00000532339 SENP2Q9HC62 589 aa8.81□□□□□ -1
CD44-235ENST00000532339 CAPN5O15484 640 aaPredicted RBP8.8□□□□□ -1
CD44-235ENST00000532339 ARID5BQ14865 1188 aa8.8□□□□□ -1
CD44-235ENST00000532339 SH3BP5LQ7L8J4 393 aa8.8□□□□□ -1
CD44-235ENST00000532339 SH3RF1Q7Z6J0 888 aa8.8□□□□□ -1
CD44-235ENST00000532339 C1QTNF2Q9BXJ5 285 aa8.79□□□□□ -1
CD44-235ENST00000532339 FKBPLQ9UIM3 349 aa8.79□□□□□ -1
CD44-235ENST00000532339 RFC5P40937 340 aa8.78□□□□□ -1
CD44-235ENST00000532339 NR6A1Q15406 480 aa8.78□□□□□ -1
CD44-235ENST00000532339 KIFC2Q96AC6 838 aa8.78□□□□□ -1
CD44-235ENST00000532339 ZC3H4Q9UPT8 1303 aaKnown RBP8.78□□□□□ -1
CD44-235ENST00000532339 MAGEB6P1A0A0J9YX57 407 aa8.77□□□□□ -1.01
CD44-235ENST00000532339 NR5A1Q13285 461 aa8.77□□□□□ -1.01
CD44-235ENST00000532339 PDXDC2PQ6P474 469 aa8.77□□□□□ -1.01
CD44-235ENST00000532339 PNMA1Q8ND90 353 aa8.77□□□□□ -1.01
CD44-235ENST00000532339 TRIM47Q96LD4 638 aa8.77□□□□□ -1.01
CD44-235ENST00000532339 USP17L8P0C7I0 530 aa8.76□□□□□ -1.01
CD44-235ENST00000532339 TRMT44Q8IYL2 757 aaKnown RBP8.76□□□□□ -1.01
CD44-235ENST00000532339 MAP4K5Q9Y4K4 846 aa8.76□□□□□ -1.01
CD44-235ENST00000532339 WDR4P57081 412 aaKnown RBP8.75□□□□□ -1.01
CD44-235ENST00000532339 TMEM259Q4ZIN3 620 aa8.75□□□□□ -1.01
CD44-235ENST00000532339 ARHGAP9Q9BRR9 750 aa8.75□□□□□ -1.01
CD44-235ENST00000532339 CARD14Q9BXL6 1004 aa8.75□□□□□ -1.01
CD44-235ENST00000532339 TIMP2P16035 220 aa8.74□□□□□ -1.01
CD44-235ENST00000532339 GRM5P41594 1212 aa8.74□□□□□ -1.01
CD44-235ENST00000532339 VASH1Q7L8A9 365 aaPredicted RBP8.74□□□□□ -1.01
CD44-235ENST00000532339 BMP1P13497 986 aa8.73□□□□□ -1.01
CD44-235ENST00000532339 SNRPBP14678 240 aaKnown RBP8.73□□□□□ -1.01
CD44-235ENST00000532339 ERFEQ4G0M1 354 aa8.73□□□□□ -1.01
CD44-235ENST00000532339 TRIM46Q7Z4K8 759 aa8.73□□□□□ -1.01
CD44-235ENST00000532339 GPSM3Q9Y4H4 160 aa8.73□□□□□ -1.01
CD44-235ENST00000532339 NISCHQ9Y2I1 1504 aa8.73□□□□□ -1.01
CD44-235ENST00000532339 FSHRP23945 695 aa8.72□□□□□ -1.01
CD44-235ENST00000532339 PTK2Q05397 1052 aa8.72□□□□□ -1.01
CD44-235ENST00000532339 ZBTB33Q86T24 672 aa8.72□□□□□ -1.01
CD44-235ENST00000532339 KLF16Q9BXK1 252 aaPredicted RBP8.72□□□□□ -1.01
CD44-235ENST00000532339 HMX1Q9NP08 348 aaPredicted RBP8.72□□□□□ -1.01
CD44-235ENST00000532339 NR3C2P08235 984 aa8.71□□□□□ -1.02
CD44-235ENST00000532339 EPS8L1Q8TE68 723 aa8.71□□□□□ -1.02
CD44-235ENST00000532339 CDV3Q9UKY7 258 aaKnown RBP8.71□□□□□ -1.02
CD44-235ENST00000532339 ZIC2O95409 532 aaPredicted RBP8.7□□□□□ -1.02
CD44-235ENST00000532339 SCARF1Q14162 830 aa8.7□□□□□ -1.02
CD44-235ENST00000532339 MRPL14Q6P1L8 145 aaKnown RBP8.7□□□□□ -1.02
CD44-235ENST00000532339 ITPKCQ96DU7 683 aa8.7□□□□□ -1.02
CD44-235ENST00000532339 SLC10A4Q96EP9 437 aa8.7□□□□□ -1.02
CD44-235ENST00000532339 TREML4Q6UXN2 200 aa8.68□□□□□ -1.02
CD44-235ENST00000532339 CCDC116Q8IYX3 515 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms