RNA–Protein interactions for RNA: ENST00000531516.1

C11orf54-210, Transcript of chromosome 11 open reading frame 54, humanhuman

TSL 3

Gene C11orf54, Length 168 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C11orf54-210ENST00000531516 UPF1Q92900 1129 aaKnown RBP eCLIP17.82■□□□□ 0.44
C11orf54-210ENST00000531516 PRDM11Q9NQV5 511 aa17.82■□□□□ 0.44
C11orf54-210ENST00000531516 PPIP5K1Q6PFW1 1433 aa17.81■□□□□ 0.44
C11orf54-210ENST00000531516 BRD4O60885 1362 aaPredicted RBP17.81■□□□□ 0.44
C11orf54-210ENST00000531516 SLIT2O94813 1529 aa17.81■□□□□ 0.44
C11orf54-210ENST00000531516 SLC24A1O60721 1099 aa17.8■□□□□ 0.44
C11orf54-210ENST00000531516 VPS72Q15906 364 aa17.8■□□□□ 0.44
C11orf54-210ENST00000531516 NLRP13Q86W25 1043 aa17.8■□□□□ 0.44
C11orf54-210ENST00000531516 CABP1Q9NZU7 370 aa17.8■□□□□ 0.44
C11orf54-210ENST00000531516 FAM83GA6ND36 823 aa17.79■□□□□ 0.44
C11orf54-210ENST00000531516 BTG4Q9NY30 223 aa17.79■□□□□ 0.44
C11orf54-210ENST00000531516 A0A0G2JS52 829 aa17.78■□□□□ 0.44
C11orf54-210ENST00000531516 MYT1Q01538 1121 aa17.78■□□□□ 0.44
C11orf54-210ENST00000531516 ZNF692Q9BU19 519 aaPredicted RBP17.78■□□□□ 0.44
C11orf54-210ENST00000531516 TRPM1Q7Z4N2 1603 aa17.78■□□□□ 0.44
C11orf54-210ENST00000531516 NUTM2GQ5VZR2 741 aa17.77■□□□□ 0.44
C11orf54-210ENST00000531516 MARF1Q9Y4F3 1742 aaKnown RBP17.76■□□□□ 0.43
C11orf54-210ENST00000531516 TRPM3Q9HCF6 1732 aaPredicted RBP17.75■□□□□ 0.43
C11orf54-210ENST00000531516 RALGAPBQ86X10 1494 aa17.75■□□□□ 0.43
C11orf54-210ENST00000531516 QRICH2Q9H0J4 1663 aa17.74■□□□□ 0.43
C11orf54-210ENST00000531516 EVA1CP58658 441 aa17.74■□□□□ 0.43
C11orf54-210ENST00000531516 CCDC125Q86Z20 511 aa17.74■□□□□ 0.43
C11orf54-210ENST00000531516 PCGF6Q9BYE7 350 aa17.74■□□□□ 0.43
C11orf54-210ENST00000531516 NLRP6P59044 892 aa17.73■□□□□ 0.43
C11orf54-210ENST00000531516 ZC3H6P61129 1189 aaKnown RBP17.73■□□□□ 0.43
C11orf54-210ENST00000531516 SBNO2Q9Y2G9 1366 aa17.73■□□□□ 0.43
C11orf54-210ENST00000531516 CLSPNQ9HAW4 1339 aa17.72■□□□□ 0.43
C11orf54-210ENST00000531516 ALS2Q96Q42 1657 aa17.72■□□□□ 0.43
C11orf54-210ENST00000531516 KIAA0232Q92628 1395 aa17.72■□□□□ 0.43
C11orf54-210ENST00000531516 SEPT12Q8IYM1 358 aa17.72■□□□□ 0.43
C11orf54-210ENST00000531516 TIMELESSQ9UNS1 1208 aa17.72■□□□□ 0.43
C11orf54-210ENST00000531516 SF3B2Q13435 895 aaKnown RBP17.71■□□□□ 0.43
C11orf54-210ENST00000531516 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.71■□□□□ 0.43
C11orf54-210ENST00000531516 USP6P35125 1406 aa17.71■□□□□ 0.43
C11orf54-210ENST00000531516 TOPAZ1Q8N9V7 1692 aa17.71■□□□□ 0.42
C11orf54-210ENST00000531516 TMC1Q8TDI8 760 aa17.7■□□□□ 0.42
C11orf54-210ENST00000531516 STRN4Q9NRL3 753 aa17.7■□□□□ 0.42
C11orf54-210ENST00000531516 ONECUT3O60422 494 aaPredicted RBP17.69■□□□□ 0.42
C11orf54-210ENST00000531516 GCP02774 474 aa17.69■□□□□ 0.42
C11orf54-210ENST00000531516 CHRNA2Q15822 529 aa17.69■□□□□ 0.42
C11orf54-210ENST00000531516 HDGFL2Q7Z4V5 671 aaPredicted RBP17.69■□□□□ 0.42
C11orf54-210ENST00000531516 NWD2Q9ULI1 1742 aa17.69■□□□□ 0.42
C11orf54-210ENST00000531516 TTC21AQ8NDW8 1320 aa17.69■□□□□ 0.42
C11orf54-210ENST00000531516 COL14A1Q05707 1796 aaKnown RBP17.68■□□□□ 0.42
C11orf54-210ENST00000531516 FAM98CQ17RN3 349 aaKnown RBP17.68■□□□□ 0.42
C11orf54-210ENST00000531516 KRT27Q7Z3Y8 459 aa17.68■□□□□ 0.42
C11orf54-210ENST00000531516 PUS7Q96PZ0 661 aaKnown RBP17.68■□□□□ 0.42
C11orf54-210ENST00000531516 TERF2IPQ9NYB0 399 aa17.68■□□□□ 0.42
C11orf54-210ENST00000531516 USP19O94966 1318 aa17.68■□□□□ 0.42
C11orf54-210ENST00000531516 ZBTB7CA1YPR0 619 aa17.67■□□□□ 0.42
C11orf54-210ENST00000531516 KCNH5Q8NCM2 988 aa17.67■□□□□ 0.42
C11orf54-210ENST00000531516 SPATA31A5Q5VU36 1347 aa17.67■□□□□ 0.42
C11orf54-210ENST00000531516 SPATA31A7Q8IWB4 1347 aa17.67■□□□□ 0.42
C11orf54-210ENST00000531516 ABCA3Q99758 1704 aa17.67■□□□□ 0.42
C11orf54-210ENST00000531516 CPDO75976 1380 aa17.66■□□□□ 0.42
C11orf54-210ENST00000531516 KTN1Q86UP2 1357 aaKnown RBP17.66■□□□□ 0.42
C11orf54-210ENST00000531516 PLCH1Q4KWH8 1693 aa17.66■□□□□ 0.42
C11orf54-210ENST00000531516 TTC21BQ7Z4L5 1316 aa17.65■□□□□ 0.42
C11orf54-210ENST00000531516 ST20-MTHFSA0A0A6YYL1 179 aa17.64■□□□□ 0.41
C11orf54-210ENST00000531516 GLI3P10071 1580 aa17.64■□□□□ 0.41
C11orf54-210ENST00000531516 CDCA8Q53HL2 280 aa17.63■□□□□ 0.41
C11orf54-210ENST00000531516 TMF1P82094 1093 aa17.62■□□□□ 0.41
C11orf54-210ENST00000531516 CCER1Q8TC90 406 aaPredicted RBP17.62■□□□□ 0.41
C11orf54-210ENST00000531516 USP35Q9P2H5 1018 aa17.62■□□□□ 0.41
C11orf54-210ENST00000531516 SPATA31A1Q5TZJ5 1347 aa17.62■□□□□ 0.41
C11orf54-210ENST00000531516 NINLQ9Y2I6 1382 aa17.62■□□□□ 0.41
C11orf54-210ENST00000531516 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.6■□□□□ 0.41
C11orf54-210ENST00000531516 TCP11L2Q8N4U5 519 aa17.6■□□□□ 0.41
C11orf54-210ENST00000531516 THRAP3Q9Y2W1 955 aaKnown RBP17.6■□□□□ 0.41
C11orf54-210ENST00000531516 BLMP54132 1417 aaPredicted RBP17.6■□□□□ 0.41
C11orf54-210ENST00000531516 CPSF1Q10570 1443 aaKnown RBP17.6■□□□□ 0.41
C11orf54-210ENST00000531516 PHRF1Q9P1Y6 1649 aaKnown RBP17.59■□□□□ 0.41
C11orf54-210ENST00000531516 SSH2Q76I76 1423 aa17.59■□□□□ 0.41
C11orf54-210ENST00000531516 AATKQ6ZMQ8 1374 aa17.59■□□□□ 0.41
C11orf54-210ENST00000531516 SOX12O15370 315 aa17.59■□□□□ 0.41
C11orf54-210ENST00000531516 PDE3BQ13370 1112 aa17.59■□□□□ 0.41
C11orf54-210ENST00000531516 SLC12A5Q9H2X9 1139 aa17.59■□□□□ 0.41
C11orf54-210ENST00000531516 USP47Q96K76 1375 aa17.58■□□□□ 0.4
C11orf54-210ENST00000531516 BARGINQ6ZT62 677 aa17.58■□□□□ 0.4
C11orf54-210ENST00000531516 ZRANB1Q9UGI0 708 aa17.58■□□□□ 0.4
C11orf54-210ENST00000531516 NRKQ7Z2Y5 1582 aa17.57■□□□□ 0.4
C11orf54-210ENST00000531516 CSB-PGBD3P0DP91 1061 aa17.57■□□□□ 0.4
C11orf54-210ENST00000531516 LARP1Q6PKG0 1096 aaKnown RBP17.57■□□□□ 0.4
C11orf54-210ENST00000531516 CRYBG1Q9Y4K1 1723 aa17.57■□□□□ 0.4
C11orf54-210ENST00000531516 NRAPQ86VF7 1730 aa17.56■□□□□ 0.4
C11orf54-210ENST00000531516 BAG6P46379 1132 aa17.56■□□□□ 0.4
C11orf54-210ENST00000531516 TOM1L2Q6ZVM7 507 aa17.56■□□□□ 0.4
C11orf54-210ENST00000531516 TESK2Q96S53 571 aa17.56■□□□□ 0.4
C11orf54-210ENST00000531516 EDC4Q6P2E9 1401 aaKnown RBP17.55■□□□□ 0.4
C11orf54-210ENST00000531516 C11orf95C9JLR9 678 aaPredicted RBP17.55■□□□□ 0.4
C11orf54-210ENST00000531516 FAM196AQ6ZSG2 479 aa17.55■□□□□ 0.4
C11orf54-210ENST00000531516 SLIT3O75094 1523 aa17.54■□□□□ 0.4
C11orf54-210ENST00000531516 ARHGEF25Q86VW2 580 aa17.54■□□□□ 0.4
C11orf54-210ENST00000531516 NME9Q86XW9 330 aa17.53■□□□□ 0.4
C11orf54-210ENST00000531516 CDCA7Q9BWT1 371 aaPredicted RBP17.53■□□□□ 0.4
C11orf54-210ENST00000531516 CRB1P82279 1406 aa17.53■□□□□ 0.4
C11orf54-210ENST00000531516 USP31Q70CQ4 1352 aa17.53■□□□□ 0.4
C11orf54-210ENST00000531516 CAMTA1Q9Y6Y1 1673 aa17.52■□□□□ 0.4
C11orf54-210ENST00000531516 A0A1W2PP64 1363 aa17.52■□□□□ 0.39
C11orf54-210ENST00000531516 WDR17Q8IZU2 1322 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms