RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 TBC1D2BQ9UPU7 963 aa7.86□□□□□ -1.15
CD44-233ENST00000531141 COG6Q9Y2V7 657 aa7.86□□□□□ -1.15
CD44-233ENST00000531141 ZBTB24O43167 697 aaPredicted RBP7.85□□□□□ -1.15
CD44-233ENST00000531141 GPR37L1O60883 481 aa7.85□□□□□ -1.15
CD44-233ENST00000531141 A6NJR5 290 aa7.84□□□□□ -1.15
CD44-233ENST00000531141 RPIAP49247 311 aa7.84□□□□□ -1.15
CD44-233ENST00000531141 TRIM32Q13049 653 aa7.84□□□□□ -1.15
CD44-233ENST00000531141 PTCRAQ6ISU1 281 aaPredicted RBP7.83□□□□□ -1.16
CD44-233ENST00000531141 WWC1Q8IX03 1113 aa7.83□□□□□ -1.16
CD44-233ENST00000531141 POM121Q96HA1 1249 aa7.83□□□□□ -1.16
CD44-233ENST00000531141 GDPD2Q9HCC8 539 aa7.83□□□□□ -1.16
CD44-233ENST00000531141 PROSER2Q86WR7 435 aaPredicted RBP7.82□□□□□ -1.16
CD44-233ENST00000531141 TIMELESSQ9UNS1 1208 aa7.82□□□□□ -1.16
CD44-233ENST00000531141 ABL2P42684 1182 aa7.81□□□□□ -1.16
CD44-233ENST00000531141 Q6ZNB5 142 aa7.81□□□□□ -1.16
CD44-233ENST00000531141 CLUAP1Q96AJ1 413 aa7.81□□□□□ -1.16
CD44-233ENST00000531141 GPSM3Q9Y4H4 160 aa7.81□□□□□ -1.16
CD44-233ENST00000531141 WNT7BP56706 349 aa7.8□□□□□ -1.16
CD44-233ENST00000531141 LINC01559Q495D7 138 aa7.8□□□□□ -1.16
CD44-233ENST00000531141 PDXDC2PQ6P474 469 aa7.8□□□□□ -1.16
CD44-233ENST00000531141 ZNF511Q8NB15 262 aa7.8□□□□□ -1.16
CD44-233ENST00000531141 SLC19A1P41440 591 aa7.79□□□□□ -1.16
CD44-233ENST00000531141 IRF5Q13568 498 aa7.79□□□□□ -1.16
CD44-233ENST00000531141 EMID1Q96A84 441 aaPredicted RBP7.79□□□□□ -1.16
CD44-233ENST00000531141 ZMYND15Q9H091 742 aa7.79□□□□□ -1.16
CD44-233ENST00000531141 V9GY48 417 aaPredicted RBP7.79□□□□□ -1.16
CD44-233ENST00000531141 ZBBXA8MT70 800 aa7.78□□□□□ -1.16
CD44-233ENST00000531141 CD2BP2O95400 341 aaKnown RBP7.78□□□□□ -1.16
CD44-233ENST00000531141 PTK2Q05397 1052 aa7.78□□□□□ -1.16
CD44-233ENST00000531141 WASHC4Q2M389 1173 aa7.78□□□□□ -1.16
CD44-233ENST00000531141 LIAT1Q6ZQX7 453 aa7.78□□□□□ -1.16
CD44-233ENST00000531141 SH3BP5LQ7L8J4 393 aa7.78□□□□□ -1.16
CD44-233ENST00000531141 BPHLQ86WA6 291 aaPredicted RBP7.78□□□□□ -1.16
CD44-233ENST00000531141 BAP1Q92560 729 aa7.78□□□□□ -1.16
CD44-233ENST00000531141 NR1H3Q13133 447 aa7.77□□□□□ -1.17
CD44-233ENST00000531141 ARHGAP9Q9BRR9 750 aa7.77□□□□□ -1.17
CD44-233ENST00000531141 PRKD2Q9BZL6 878 aa7.77□□□□□ -1.17
CD44-233ENST00000531141 SH3BP2P78314 561 aa7.76□□□□□ -1.17
CD44-233ENST00000531141 SPRYD7Q5W111 196 aa7.76□□□□□ -1.17
CD44-233ENST00000531141 SH3RF1Q7Z6J0 888 aa7.76□□□□□ -1.17
CD44-233ENST00000531141 FNBP4Q8N3X1 1017 aaPredicted RBP7.76□□□□□ -1.17
CD44-233ENST00000531141 ZNF592Q92610 1267 aa7.76□□□□□ -1.17
CD44-233ENST00000531141 FBXO45P0C2W1 286 aa7.75□□□□□ -1.17
CD44-233ENST00000531141 AGERQ15109 404 aa7.75□□□□□ -1.17
CD44-233ENST00000531141 ZNF330Q9Y3S2 320 aaPredicted RBP7.75□□□□□ -1.17
CD44-233ENST00000531141 SKOR1P84550 965 aa7.74□□□□□ -1.17
CD44-233ENST00000531141 ZNF697Q5TEC3 545 aa7.74□□□□□ -1.17
CD44-233ENST00000531141 ZNF598Q86UK7 904 aaKnown RBP7.74□□□□□ -1.17
CD44-233ENST00000531141 FOXJ1Q92949 421 aa7.74□□□□□ -1.17
CD44-233ENST00000531141 C1QTNF2Q9BXJ5 285 aa7.74□□□□□ -1.17
CD44-233ENST00000531141 MAGEB6P1A0A0J9YX57 407 aa7.73□□□□□ -1.17
CD44-233ENST00000531141 TRAK2O60296 914 aa7.73□□□□□ -1.17
CD44-233ENST00000531141 SOX11P35716 441 aa7.73□□□□□ -1.17
CD44-233ENST00000531141 EHBP1Q8NDI1 1231 aa7.73□□□□□ -1.17
CD44-233ENST00000531141 CARD14Q9BXL6 1004 aa7.73□□□□□ -1.17
CD44-233ENST00000531141 WNT7AO00755 349 aa7.72□□□□□ -1.17
CD44-233ENST00000531141 VARSP26640 1264 aaKnown RBP7.72□□□□□ -1.17
CD44-233ENST00000531141 EIF4G2P78344 907 aaKnown RBP eCLIP7.72□□□□□ -1.17
CD44-233ENST00000531141 VAC14Q08AM6 782 aa7.72□□□□□ -1.17
CD44-233ENST00000531141 ERFEQ4G0M1 354 aa7.72□□□□□ -1.17
CD44-233ENST00000531141 ZBTB33Q86T24 672 aa7.72□□□□□ -1.17
CD44-233ENST00000531141 TRMT44Q8IYL2 757 aaKnown RBP7.72□□□□□ -1.17
CD44-233ENST00000531141 ADAM32Q8TC27 787 aa7.72□□□□□ -1.17
CD44-233ENST00000531141 SLC10A4Q96EP9 437 aa7.72□□□□□ -1.17
CD44-233ENST00000531141 OCSTAMPQ9BR26 566 aa7.72□□□□□ -1.17
CD44-233ENST00000531141 LAPTM4AQ15012 233 aa7.71□□□□□ -1.18
CD44-233ENST00000531141 C4orf48Q5BLP8 95 aa7.71□□□□□ -1.18
CD44-233ENST00000531141 RC3H1Q5TC82 1133 aaKnown RBP7.71□□□□□ -1.18
CD44-233ENST00000531141 FAM174AQ8TBP5 190 aa7.71□□□□□ -1.18
CD44-233ENST00000531141 CDV3Q9UKY7 258 aaKnown RBP7.7□□□□□ -1.18
CD44-233ENST00000531141 MCCD1P59942 119 aaPredicted RBP7.69□□□□□ -1.18
CD44-233ENST00000531141 MAP4K5Q9Y4K4 846 aa7.69□□□□□ -1.18
CD44-233ENST00000531141 PCDHB9Q9Y5E1 797 aa7.69□□□□□ -1.18
CD44-233ENST00000531141 POM121CA8CG34 1229 aa7.68□□□□□ -1.18
CD44-233ENST00000531141 NBPF20Q3BBV1 942 aa7.68□□□□□ -1.18
CD44-233ENST00000531141 MPNDQ8N594 471 aa7.68□□□□□ -1.18
CD44-233ENST00000531141 LCE2BO14633 110 aa7.67□□□□□ -1.18
CD44-233ENST00000531141 PRR20EP86478 221 aa7.67□□□□□ -1.18
CD44-233ENST00000531141 PRR20CP86479 221 aa7.67□□□□□ -1.18
CD44-233ENST00000531141 PRR20DP86480 221 aa7.67□□□□□ -1.18
CD44-233ENST00000531141 PRR20BP86481 221 aa7.67□□□□□ -1.18
CD44-233ENST00000531141 PRR20AP86496 221 aa7.67□□□□□ -1.18
CD44-233ENST00000531141 DZIP3Q86Y13 1208 aaKnown RBP7.67□□□□□ -1.18
CD44-233ENST00000531141 GLMNQ92990 594 aa7.67□□□□□ -1.18
CD44-233ENST00000531141 MRGPRX2Q96LB1 330 aa7.67□□□□□ -1.18
CD44-233ENST00000531141 PKD2L1Q9P0L9 805 aa7.67□□□□□ -1.18
CD44-233ENST00000531141 SEMA3FQ13275 785 aa7.66□□□□□ -1.18
CD44-233ENST00000531141 TLL2Q9Y6L7 1015 aa7.66□□□□□ -1.18
CD44-233ENST00000531141 GDF9O60383 454 aa7.65□□□□□ -1.18
CD44-233ENST00000531141 FOXC1Q12948 553 aa7.65□□□□□ -1.18
CD44-233ENST00000531141 TRAF7Q6Q0C0 670 aa7.65□□□□□ -1.18
CD44-233ENST00000531141 SIAH2O43255 324 aa7.64□□□□□ -1.19
CD44-233ENST00000531141 ADAMTS19Q8TE59 1207 aa7.64□□□□□ -1.19
CD44-233ENST00000531141 CDK15Q96Q40 435 aa7.64□□□□□ -1.19
CD44-233ENST00000531141 ALG2Q9H553 416 aa7.64□□□□□ -1.19
CD44-233ENST00000531141 TNFRSF10AO00220 468 aa7.63□□□□□ -1.19
CD44-233ENST00000531141 ADH1CP00326 375 aa7.63□□□□□ -1.19
CD44-233ENST00000531141 TRIM67Q6ZTA4 783 aa7.63□□□□□ -1.19
CD44-233ENST00000531141 VASH1Q7L8A9 365 aaPredicted RBP7.63□□□□□ -1.19
CD44-233ENST00000531141 CALR3Q96L12 384 aaKnown RBP7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms