RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 A0A0G2JS52 829 aa12.7□□□□□ -0.38
CD44-232ENST00000531118 MYT1Q01538 1121 aa12.7□□□□□ -0.38
CD44-232ENST00000531118 TRPM3Q9HCF6 1732 aaPredicted RBP12.69□□□□□ -0.38
CD44-232ENST00000531118 HAP1P54257 671 aaPredicted RBP12.68□□□□□ -0.38
CD44-232ENST00000531118 ALS2Q96Q42 1657 aa12.67□□□□□ -0.38
CD44-232ENST00000531118 NUTM2FA1L443 756 aa12.67□□□□□ -0.38
CD44-232ENST00000531118 NRXN1Q9ULB1 1477 aa12.66□□□□□ -0.38
CD44-232ENST00000531118 FAM98CQ17RN3 349 aaKnown RBP12.66□□□□□ -0.38
CD44-232ENST00000531118 ARHGEF10O15013 1369 aa12.66□□□□□ -0.38
CD44-232ENST00000531118 PLEKHH1Q9ULM0 1364 aa12.66□□□□□ -0.38
CD44-232ENST00000531118 LOC105371045A0A1W2PR82 267 aa12.65□□□□□ -0.38
CD44-232ENST00000531118 VGFO15240 615 aaPredicted RBP12.65□□□□□ -0.38
CD44-232ENST00000531118 EZH2Q15910 746 aaKnown RBP12.65□□□□□ -0.38
CD44-232ENST00000531118 CABLES1Q8TDN4 633 aa12.65□□□□□ -0.38
CD44-232ENST00000531118 SBNO1A3KN83 1393 aa12.65□□□□□ -0.38
CD44-232ENST00000531118 PARD3Q8TEW0 1356 aa12.65□□□□□ -0.38
CD44-232ENST00000531118 NINLQ9Y2I6 1382 aa12.65□□□□□ -0.38
CD44-232ENST00000531118 RRBP1Q9P2E9 1410 aaKnown RBP12.64□□□□□ -0.39
CD44-232ENST00000531118 FAM182BQ5T319 152 aa12.64□□□□□ -0.39
CD44-232ENST00000531118 KRT28Q7Z3Y7 464 aa12.64□□□□□ -0.39
CD44-232ENST00000531118 RGPD3A6NKT7 1758 aaPredicted RBP12.62□□□□□ -0.39
CD44-232ENST00000531118 RGPD4Q7Z3J3 1758 aa12.62□□□□□ -0.39
CD44-232ENST00000531118 NRKQ7Z2Y5 1582 aa12.62□□□□□ -0.39
CD44-232ENST00000531118 PLEKHG5O94827 1062 aa12.62□□□□□ -0.39
CD44-232ENST00000531118 RPGRIP1LQ68CZ1 1315 aa12.62□□□□□ -0.39
CD44-232ENST00000531118 CASZ1Q86V15 1759 aa12.61□□□□□ -0.39
CD44-232ENST00000531118 REM2Q8IYK8 340 aaPredicted RBP12.61□□□□□ -0.39
CD44-232ENST00000531118 CAMKK2Q96RR4 588 aa12.61□□□□□ -0.39
CD44-232ENST00000531118 CHD4Q14839 1912 aa12.6□□□□□ -0.39
CD44-232ENST00000531118 PHRF1Q9P1Y6 1649 aaKnown RBP12.6□□□□□ -0.39
CD44-232ENST00000531118 FAM83GA6ND36 823 aa12.6□□□□□ -0.39
CD44-232ENST00000531118 WAPLQ7Z5K2 1190 aa12.6□□□□□ -0.39
CD44-232ENST00000531118 FBXO3Q9UK99 471 aa12.6□□□□□ -0.39
CD44-232ENST00000531118 MYOM1P52179 1685 aa12.6□□□□□ -0.39
CD44-232ENST00000531118 SPATA31A5Q5VU36 1347 aa12.6□□□□□ -0.39
CD44-232ENST00000531118 SPATA31A7Q8IWB4 1347 aa12.6□□□□□ -0.39
CD44-232ENST00000531118 ABCC11Q96J66 1382 aa12.59□□□□□ -0.39
CD44-232ENST00000531118 BTG4Q9NY30 223 aa12.59□□□□□ -0.39
CD44-232ENST00000531118 PIK3C2GO75747 1445 aa12.58□□□□□ -0.4
CD44-232ENST00000531118 PSME1Q06323 249 aa12.58□□□□□ -0.4
CD44-232ENST00000531118 SPDYE1Q8NFV5 336 aaPredicted RBP12.58□□□□□ -0.4
CD44-232ENST00000531118 YTHDC2Q9H6S0 1430 aaKnown RBP12.58□□□□□ -0.4
CD44-232ENST00000531118 PHF8Q9UPP1 1060 aa12.58□□□□□ -0.4
CD44-232ENST00000531118 LMOD2Q6P5Q4 547 aa12.57□□□□□ -0.4
CD44-232ENST00000531118 STK26Q9P289 416 aa12.57□□□□□ -0.4
CD44-232ENST00000531118 PPP1R1BQ9UD71 204 aaPredicted RBP12.57□□□□□ -0.4
CD44-232ENST00000531118 ADGRF5Q8IZF2 1346 aa12.57□□□□□ -0.4
CD44-232ENST00000531118 ANKARQ7Z5J8 1434 aa12.56□□□□□ -0.4
CD44-232ENST00000531118 SENP3-EIF4A1A0A087X0R7 540 aa12.56□□□□□ -0.4
CD44-232ENST00000531118 TRIM37O94972 964 aa12.56□□□□□ -0.4
CD44-232ENST00000531118 IFFO2Q5TF58 517 aa12.56□□□□□ -0.4
CD44-232ENST00000531118 ITGAEP38570 1179 aa12.55□□□□□ -0.4
CD44-232ENST00000531118 SPON1Q9HCB6 807 aa12.55□□□□□ -0.4
CD44-232ENST00000531118 PARP4Q9UKK3 1724 aaKnown RBP12.54□□□□□ -0.4
CD44-232ENST00000531118 APBA3O96018 575 aa12.54□□□□□ -0.4
CD44-232ENST00000531118 ZNF784Q8NCA9 323 aaPredicted RBP12.54□□□□□ -0.4
CD44-232ENST00000531118 FAM196AQ6ZSG2 479 aa12.53□□□□□ -0.4
CD44-232ENST00000531118 UTRNP46939 3433 aa12.53□□□□□ -0.4
CD44-232ENST00000531118 SBF2Q86WG5 1849 aa12.53□□□□□ -0.4
CD44-232ENST00000531118 SPATA31E1Q6ZUB1 1445 aa12.53□□□□□ -0.4
CD44-232ENST00000531118 ITSN1Q15811 1721 aa12.52□□□□□ -0.41
CD44-232ENST00000531118 PEAK1Q9H792 1746 aa12.52□□□□□ -0.41
CD44-232ENST00000531118 KCNQ2O43526 872 aa12.52□□□□□ -0.41
CD44-232ENST00000531118 NBPF8Q3BBV2 869 aa12.52□□□□□ -0.41
CD44-232ENST00000531118 NBPF14Q5TI25 921 aa12.52□□□□□ -0.41
CD44-232ENST00000531118 SPATA31A1Q5TZJ5 1347 aa12.52□□□□□ -0.41
CD44-232ENST00000531118 DLC1Q96QB1 1528 aa12.52□□□□□ -0.41
CD44-232ENST00000531118 TMEM132EQ6IEE7 984 aa12.51□□□□□ -0.41
CD44-232ENST00000531118 ANKRD30BQ9BXX2 1392 aa12.51□□□□□ -0.41
CD44-232ENST00000531118 TULP4Q9NRJ4 1543 aa12.51□□□□□ -0.41
CD44-232ENST00000531118 LRRC37A3O60309 1634 aa12.5□□□□□ -0.41
CD44-232ENST00000531118 LMO7Q8WWI1 1683 aa12.5□□□□□ -0.41
CD44-232ENST00000531118 WNK3Q9BYP7 1800 aa12.5□□□□□ -0.41
CD44-232ENST00000531118 SSH2Q76I76 1423 aa12.49□□□□□ -0.41
CD44-232ENST00000531118 PMFBP1Q8TBY8 1022 aa12.49□□□□□ -0.41
CD44-232ENST00000531118 PRDM11Q9NQV5 511 aa12.49□□□□□ -0.41
CD44-232ENST00000531118 KIAA0232Q92628 1395 aa12.48□□□□□ -0.41
CD44-232ENST00000531118 ATP7BP35670 1465 aa12.47□□□□□ -0.41
CD44-232ENST00000531118 GPRASP1Q5JY77 1395 aa12.47□□□□□ -0.41
CD44-232ENST00000531118 ACIN1Q9UKV3 1341 aaKnown RBP12.47□□□□□ -0.41
CD44-232ENST00000531118 C1QTNF8P60827 252 aa12.47□□□□□ -0.41
CD44-232ENST00000531118 PITPNM1O00562 1244 aa12.46□□□□□ -0.41
CD44-232ENST00000531118 SIRT1Q96EB6 747 aa12.46□□□□□ -0.41
CD44-232ENST00000531118 ANO8Q9HCE9 1232 aaPredicted RBP12.46□□□□□ -0.41
CD44-232ENST00000531118 EIF3AQ14152 1382 aaKnown RBP12.45□□□□□ -0.42
CD44-232ENST00000531118 STRN4Q9NRL3 753 aa12.45□□□□□ -0.42
CD44-232ENST00000531118 CLEC11AQ9Y240 323 aa12.45□□□□□ -0.42
CD44-232ENST00000531118 AKAP12Q02952 1782 aa12.45□□□□□ -0.42
CD44-232ENST00000531118 OVOS2A0A0G2JMS6 1433 aa12.45□□□□□ -0.42
CD44-232ENST00000531118 OVOS2A0A0J9YW53 1432 aa12.45□□□□□ -0.42
CD44-232ENST00000531118 OVOS2Q6IE36 1432 aa12.45□□□□□ -0.42
CD44-232ENST00000531118 TOPAZ1Q8N9V7 1692 aa12.45□□□□□ -0.42
CD44-232ENST00000531118 SAFB2Q14151 953 aaKnown RBP eCLIP12.44□□□□□ -0.42
CD44-232ENST00000531118 BARGINQ6ZT62 677 aa12.44□□□□□ -0.42
CD44-232ENST00000531118 ADGRB1O14514 1584 aa12.43□□□□□ -0.42
CD44-232ENST00000531118 PRR36Q9H6K5 1346 aa12.43□□□□□ -0.42
CD44-232ENST00000531118 PDE3BQ13370 1112 aa12.43□□□□□ -0.42
CD44-232ENST00000531118 CHRNA2Q15822 529 aa12.43□□□□□ -0.42
CD44-232ENST00000531118 PRAM1Q96QH2 718 aa12.43□□□□□ -0.42
CD44-232ENST00000531118 DHX57Q6P158 1386 aaKnown RBP12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms