RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 PPIP5K1Q6PFW1 1433 aa19.03■□□□□ 0.64
VPS28-211ENST00000530790 NWD2Q9ULI1 1742 aa19.03■□□□□ 0.64
VPS28-211ENST00000530790 ACEP12821 1306 aa19.02■□□□□ 0.64
VPS28-211ENST00000530790 CRYBG1Q9Y4K1 1723 aa19.02■□□□□ 0.63
VPS28-211ENST00000530790 PLEKHG3A1L390 1219 aa19.01■□□□□ 0.63
VPS28-211ENST00000530790 UPF1Q92900 1129 aaKnown RBP eCLIP19.01■□□□□ 0.63
VPS28-211ENST00000530790 CABP2Q9NPB3 220 aa19.01■□□□□ 0.63
VPS28-211ENST00000530790 NBPF8Q3BBV2 869 aa19■□□□□ 0.63
VPS28-211ENST00000530790 GJD4Q96KN9 370 aaPredicted RBP19■□□□□ 0.63
VPS28-211ENST00000530790 RALGAPBQ86X10 1494 aa19■□□□□ 0.63
VPS28-211ENST00000530790 EVC2Q86UK5 1308 aa19■□□□□ 0.63
VPS28-211ENST00000530790 COL14A1Q05707 1796 aaKnown RBP18.98■□□□□ 0.63
VPS28-211ENST00000530790 GLI3P10071 1580 aa18.98■□□□□ 0.63
VPS28-211ENST00000530790 ATAD2Q6PL18 1390 aa18.98■□□□□ 0.63
VPS28-211ENST00000530790 PHRF1Q9P1Y6 1649 aaKnown RBP18.98■□□□□ 0.63
VPS28-211ENST00000530790 NRAPQ86VF7 1730 aa18.97■□□□□ 0.63
VPS28-211ENST00000530790 FAM83GA6ND36 823 aa18.96■□□□□ 0.63
VPS28-211ENST00000530790 CARD11Q9BXL7 1154 aa18.96■□□□□ 0.63
VPS28-211ENST00000530790 VPS72Q15906 364 aa18.95■□□□□ 0.62
VPS28-211ENST00000530790 NUTM2GQ5VZR2 741 aa18.94■□□□□ 0.62
VPS28-211ENST00000530790 PRDM11Q9NQV5 511 aa18.94■□□□□ 0.62
VPS28-211ENST00000530790 CCDC9Q9Y3X0 531 aaKnown RBP18.94■□□□□ 0.62
VPS28-211ENST00000530790 BRD4O60885 1362 aaPredicted RBP18.93■□□□□ 0.62
VPS28-211ENST00000530790 SBNO2Q9Y2G9 1366 aa18.93■□□□□ 0.62
VPS28-211ENST00000530790 USP6P35125 1406 aa18.93■□□□□ 0.62
VPS28-211ENST00000530790 BTG4Q9NY30 223 aa18.93■□□□□ 0.62
VPS28-211ENST00000530790 CABP1Q9NZU7 370 aa18.93■□□□□ 0.62
VPS28-211ENST00000530790 NRKQ7Z2Y5 1582 aa18.93■□□□□ 0.62
VPS28-211ENST00000530790 ABTB2Q8N961 1025 aa18.92■□□□□ 0.62
VPS28-211ENST00000530790 KIAA0232Q92628 1395 aa18.92■□□□□ 0.62
VPS28-211ENST00000530790 USP19O94966 1318 aa18.9■□□□□ 0.62
VPS28-211ENST00000530790 ZC3H6P61129 1189 aaKnown RBP18.87■□□□□ 0.61
VPS28-211ENST00000530790 NLRP13Q86W25 1043 aa18.87■□□□□ 0.61
VPS28-211ENST00000530790 EP400Q96L91 3159 aa18.87■□□□□ 0.61
VPS28-211ENST00000530790 A0A0G2JS52 829 aa18.86■□□□□ 0.61
VPS28-211ENST00000530790 MYT1Q01538 1121 aa18.86■□□□□ 0.61
VPS28-211ENST00000530790 CHRNA2Q15822 529 aa18.86■□□□□ 0.61
VPS28-211ENST00000530790 SEPT12Q8IYM1 358 aa18.86■□□□□ 0.61
VPS28-211ENST00000530790 AKAP12Q02952 1782 aa18.86■□□□□ 0.61
VPS28-211ENST00000530790 PIK3C2AO00443 1686 aa18.85■□□□□ 0.61
VPS28-211ENST00000530790 SSH2Q76I76 1423 aa18.85■□□□□ 0.61
VPS28-211ENST00000530790 CPDO75976 1380 aa18.85■□□□□ 0.61
VPS28-211ENST00000530790 SLIT3O75094 1523 aa18.84■□□□□ 0.61
VPS28-211ENST00000530790 BRWD3Q6RI45 1802 aa18.84■□□□□ 0.61
VPS28-211ENST00000530790 SPATA31A5Q5VU36 1347 aa18.83■□□□□ 0.61
VPS28-211ENST00000530790 SPATA31A7Q8IWB4 1347 aa18.83■□□□□ 0.61
VPS28-211ENST00000530790 ONECUT3O60422 494 aaPredicted RBP18.83■□□□□ 0.6
VPS28-211ENST00000530790 FAM98CQ17RN3 349 aaKnown RBP18.83■□□□□ 0.6
VPS28-211ENST00000530790 ZNF692Q9BU19 519 aaPredicted RBP18.83■□□□□ 0.6
VPS28-211ENST00000530790 CPSF1Q10570 1443 aaKnown RBP18.83■□□□□ 0.6
VPS28-211ENST00000530790 GCP02774 474 aa18.82■□□□□ 0.6
VPS28-211ENST00000530790 NLRP6P59044 892 aa18.82■□□□□ 0.6
VPS28-211ENST00000530790 LMO7Q8WWI1 1683 aa18.82■□□□□ 0.6
VPS28-211ENST00000530790 KTN1Q86UP2 1357 aaKnown RBP18.81■□□□□ 0.6
VPS28-211ENST00000530790 STRN4Q9NRL3 753 aa18.81■□□□□ 0.6
VPS28-211ENST00000530790 MON2Q7Z3U7 1717 aa18.8■□□□□ 0.6
VPS28-211ENST00000530790 TTC21BQ7Z4L5 1316 aa18.8■□□□□ 0.6
VPS28-211ENST00000530790 TTC21AQ8NDW8 1320 aa18.8■□□□□ 0.6
VPS28-211ENST00000530790 CLSPNQ9HAW4 1339 aa18.8■□□□□ 0.6
VPS28-211ENST00000530790 THSD7AQ9UPZ6 1657 aa18.8■□□□□ 0.6
VPS28-211ENST00000530790 KRT27Q7Z3Y8 459 aa18.8■□□□□ 0.6
VPS28-211ENST00000530790 PCGF6Q9BYE7 350 aa18.8■□□□□ 0.6
VPS28-211ENST00000530790 CAMTA1Q9Y6Y1 1673 aa18.79■□□□□ 0.6
VPS28-211ENST00000530790 SPATA31A1Q5TZJ5 1347 aa18.79■□□□□ 0.6
VPS28-211ENST00000530790 CCDC125Q86Z20 511 aa18.79■□□□□ 0.6
VPS28-211ENST00000530790 BLMP54132 1417 aaPredicted RBP18.79■□□□□ 0.6
VPS28-211ENST00000530790 EVA1CP58658 441 aa18.78■□□□□ 0.6
VPS28-211ENST00000530790 ZBTB7CA1YPR0 619 aa18.77■□□□□ 0.6
VPS28-211ENST00000530790 TMC1Q8TDI8 760 aa18.77■□□□□ 0.6
VPS28-211ENST00000530790 COL5A2P05997 1499 aaPredicted RBP18.77■□□□□ 0.59
VPS28-211ENST00000530790 CD163L1Q9NR16 1453 aa18.77■□□□□ 0.59
VPS28-211ENST00000530790 ST20-MTHFSA0A0A6YYL1 179 aa18.76■□□□□ 0.59
VPS28-211ENST00000530790 TESK2Q96S53 571 aa18.76■□□□□ 0.59
VPS28-211ENST00000530790 USP47Q96K76 1375 aa18.76■□□□□ 0.59
VPS28-211ENST00000530790 SLC24A1O60721 1099 aa18.75■□□□□ 0.59
VPS28-211ENST00000530790 HDGFL2Q7Z4V5 671 aaPredicted RBP18.75■□□□□ 0.59
VPS28-211ENST00000530790 PUS7Q96PZ0 661 aaKnown RBP18.75■□□□□ 0.59
VPS28-211ENST00000530790 USP35Q9P2H5 1018 aa18.75■□□□□ 0.59
VPS28-211ENST00000530790 TIMELESSQ9UNS1 1208 aa18.75■□□□□ 0.59
VPS28-211ENST00000530790 AATKQ6ZMQ8 1374 aa18.75■□□□□ 0.59
VPS28-211ENST00000530790 NINLQ9Y2I6 1382 aa18.74■□□□□ 0.59
VPS28-211ENST00000530790 LARP1Q6PKG0 1096 aaKnown RBP18.74■□□□□ 0.59
VPS28-211ENST00000530790 KCNH5Q8NCM2 988 aa18.74■□□□□ 0.59
VPS28-211ENST00000530790 EDC4Q6P2E9 1401 aaKnown RBP18.74■□□□□ 0.59
VPS28-211ENST00000530790 A0A1W2PP64 1363 aa18.73■□□□□ 0.59
VPS28-211ENST00000530790 SF3B2Q13435 895 aaKnown RBP18.73■□□□□ 0.59
VPS28-211ENST00000530790 TERF2IPQ9NYB0 399 aa18.73■□□□□ 0.59
VPS28-211ENST00000530790 USP54Q70EL1 1684 aa18.73■□□□□ 0.59
VPS28-211ENST00000530790 SOX12O15370 315 aa18.72■□□□□ 0.59
VPS28-211ENST00000530790 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.72■□□□□ 0.59
VPS28-211ENST00000530790 SLC12A5Q9H2X9 1139 aa18.72■□□□□ 0.59
VPS28-211ENST00000530790 NFAT5O94916 1531 aa18.72■□□□□ 0.59
VPS28-211ENST00000530790 BARGINQ6ZT62 677 aa18.71■□□□□ 0.59
VPS28-211ENST00000530790 TCP11L2Q8N4U5 519 aa18.71■□□□□ 0.59
VPS28-211ENST00000530790 CRB1P82279 1406 aa18.71■□□□□ 0.59
VPS28-211ENST00000530790 USP31Q70CQ4 1352 aa18.7■□□□□ 0.58
VPS28-211ENST00000530790 ABCC6O95255 1503 aa18.69■□□□□ 0.58
VPS28-211ENST00000530790 THRAP3Q9Y2W1 955 aaKnown RBP18.69■□□□□ 0.58
VPS28-211ENST00000530790 COL18A1P39060 1754 aa18.68■□□□□ 0.58
VPS28-211ENST00000530790 TMF1P82094 1093 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms