RNA–Protein interactions for RNA: ENST00000529813.1

USP47-208, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2

Gene USP47, Length 3,123 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-208ENST00000529813 LRP6O75581 1613 aa6.41□□□□□ -1.38
USP47-208ENST00000529813 PLEKHG3A1L390 1219 aa6.41□□□□□ -1.38
USP47-208ENST00000529813 NME9Q86XW9 330 aa6.41□□□□□ -1.38
USP47-208ENST00000529813 ARHGEF10O15013 1369 aa6.41□□□□□ -1.38
USP47-208ENST00000529813 KTN1Q86UP2 1357 aaKnown RBP6.41□□□□□ -1.38
USP47-208ENST00000529813 CLSPNQ9HAW4 1339 aa6.41□□□□□ -1.38
USP47-208ENST00000529813 RBM6P78332 1123 aaKnown RBP6.41□□□□□ -1.38
USP47-208ENST00000529813 FAM98CQ17RN3 349 aaKnown RBP6.41□□□□□ -1.38
USP47-208ENST00000529813 IFT172Q9UG01 1749 aa6.41□□□□□ -1.38
USP47-208ENST00000529813 CDC42BPGQ6DT37 1551 aa6.4□□□□□ -1.38
USP47-208ENST00000529813 TNS3Q68CZ2 1445 aa6.4□□□□□ -1.38
USP47-208ENST00000529813 GCP02774 474 aa6.4□□□□□ -1.38
USP47-208ENST00000529813 FAM182BQ5T319 152 aa6.4□□□□□ -1.38
USP47-208ENST00000529813 TIMELESSQ9UNS1 1208 aa6.4□□□□□ -1.38
USP47-208ENST00000529813 ANKARQ7Z5J8 1434 aa6.4□□□□□ -1.39
USP47-208ENST00000529813 LAMC1P11047 1609 aa6.4□□□□□ -1.39
USP47-208ENST00000529813 SETD1AO15047 1707 aaKnown RBP6.4□□□□□ -1.39
USP47-208ENST00000529813 FBLN1P23142 703 aa6.4□□□□□ -1.39
USP47-208ENST00000529813 UNC5CLQ8IV45 518 aa6.4□□□□□ -1.39
USP47-208ENST00000529813 ZNF692Q9BU19 519 aaPredicted RBP6.4□□□□□ -1.39
USP47-208ENST00000529813 DLC1Q96QB1 1528 aa6.4□□□□□ -1.39
USP47-208ENST00000529813 ATAD2Q6PL18 1390 aa6.39□□□□□ -1.39
USP47-208ENST00000529813 KIAA0232Q92628 1395 aa6.39□□□□□ -1.39
USP47-208ENST00000529813 CDCA8Q53HL2 280 aa6.39□□□□□ -1.39
USP47-208ENST00000529813 GGNBP2Q9H3C7 697 aa6.39□□□□□ -1.39
USP47-208ENST00000529813 TTC21BQ7Z4L5 1316 aa6.39□□□□□ -1.39
USP47-208ENST00000529813 COL16A1Q07092 1604 aaPredicted RBP6.39□□□□□ -1.39
USP47-208ENST00000529813 TOM1L2Q6ZVM7 507 aa6.39□□□□□ -1.39
USP47-208ENST00000529813 TULP4Q9NRJ4 1543 aa6.39□□□□□ -1.39
USP47-208ENST00000529813 GJD4Q96KN9 370 aaPredicted RBP6.39□□□□□ -1.39
USP47-208ENST00000529813 AHDC1Q5TGY3 1603 aaPredicted RBP6.38□□□□□ -1.39
USP47-208ENST00000529813 SBNO1A3KN83 1393 aa6.38□□□□□ -1.39
USP47-208ENST00000529813 TESK2Q96S53 571 aa6.38□□□□□ -1.39
USP47-208ENST00000529813 ATP7BP35670 1465 aa6.38□□□□□ -1.39
USP47-208ENST00000529813 COG3Q96JB2 828 aa6.38□□□□□ -1.39
USP47-208ENST00000529813 NLRP2Q9NX02 1062 aa6.38□□□□□ -1.39
USP47-208ENST00000529813 RALGAPBQ86X10 1494 aa6.38□□□□□ -1.39
USP47-208ENST00000529813 PXDNQ92626 1479 aa6.38□□□□□ -1.39
USP47-208ENST00000529813 AMPHP49418 695 aa6.37□□□□□ -1.39
USP47-208ENST00000529813 SEPT12Q8IYM1 358 aa6.37□□□□□ -1.39
USP47-208ENST00000529813 SLC24A1O60721 1099 aa6.37□□□□□ -1.39
USP47-208ENST00000529813 LARP1Q6PKG0 1096 aaKnown RBP6.37□□□□□ -1.39
USP47-208ENST00000529813 FNBP4Q8N3X1 1017 aaPredicted RBP6.37□□□□□ -1.39
USP47-208ENST00000529813 PDE3BQ13370 1112 aa6.36□□□□□ -1.39
USP47-208ENST00000529813 SF3B2Q13435 895 aaKnown RBP6.36□□□□□ -1.39
USP47-208ENST00000529813 RRS1Q15050 365 aaKnown RBP6.36□□□□□ -1.39
USP47-208ENST00000529813 RGPD8O14715 1765 aaPredicted RBP6.36□□□□□ -1.39
USP47-208ENST00000529813 FMN2Q9NZ56 1722 aa6.35□□□□□ -1.39
USP47-208ENST00000529813 KCNH5Q8NCM2 988 aa6.35□□□□□ -1.39
USP47-208ENST00000529813 USP6P35125 1406 aa6.35□□□□□ -1.39
USP47-208ENST00000529813 PANK3Q9H999 370 aa6.35□□□□□ -1.39
USP47-208ENST00000529813 A0A1W2PP64 1363 aa6.35□□□□□ -1.39
USP47-208ENST00000529813 POLR3AO14802 1390 aaPredicted RBP6.35□□□□□ -1.39
USP47-208ENST00000529813 KNDC1Q76NI1 1749 aa6.35□□□□□ -1.39
USP47-208ENST00000529813 ARHGEF28Q8N1W1 1705 aaKnown RBP6.35□□□□□ -1.39
USP47-208ENST00000529813 TRPM1Q7Z4N2 1603 aa6.34□□□□□ -1.39
USP47-208ENST00000529813 VPS72Q15906 364 aa6.34□□□□□ -1.39
USP47-208ENST00000529813 TTC21AQ8NDW8 1320 aa6.34□□□□□ -1.39
USP47-208ENST00000529813 KRT27Q7Z3Y8 459 aa6.34□□□□□ -1.39
USP47-208ENST00000529813 AXIN2Q9Y2T1 843 aa6.34□□□□□ -1.39
USP47-208ENST00000529813 ADRA2BP18089 450 aa6.34□□□□□ -1.4
USP47-208ENST00000529813 CC2D1BQ5T0F9 858 aaKnown RBP6.34□□□□□ -1.4
USP47-208ENST00000529813 KNSTRNQ9Y448 316 aa6.34□□□□□ -1.4
USP47-208ENST00000529813 QRICH2Q9H0J4 1663 aa6.33□□□□□ -1.4
USP47-208ENST00000529813 C11orf95C9JLR9 678 aaPredicted RBP6.33□□□□□ -1.4
USP47-208ENST00000529813 NHSL1Q5SYE7 1610 aa6.33□□□□□ -1.4
USP47-208ENST00000529813 PELP1Q8IZL8 1130 aaKnown RBP6.33□□□□□ -1.4
USP47-208ENST00000529813 USHBP1Q8N6Y0 703 aa6.33□□□□□ -1.4
USP47-208ENST00000529813 BCL9LQ86UU0 1499 aa6.33□□□□□ -1.4
USP47-208ENST00000529813 FYB1O15117 783 aa6.32□□□□□ -1.4
USP47-208ENST00000529813 DEFB132Q7Z7B7 95 aa6.32□□□□□ -1.4
USP47-208ENST00000529813 TCP11L2Q8N4U5 519 aa6.32□□□□□ -1.4
USP47-208ENST00000529813 DDX54Q8TDD1 881 aaKnown RBP6.32□□□□□ -1.4
USP47-208ENST00000529813 ANKRD24Q8TF21 1146 aa6.32□□□□□ -1.4
USP47-208ENST00000529813 UPF1Q92900 1129 aaKnown RBP eCLIP6.32□□□□□ -1.4
USP47-208ENST00000529813 USP32Q8NFA0 1604 aa6.32□□□□□ -1.4
USP47-208ENST00000529813 MORC1Q86VD1 984 aa6.32□□□□□ -1.4
USP47-208ENST00000529813 ARHGEF25Q86VW2 580 aa6.32□□□□□ -1.4
USP47-208ENST00000529813 CARD14Q9BXL6 1004 aa6.32□□□□□ -1.4
USP47-208ENST00000529813 KIAA1210Q9ULL0 1709 aa6.32□□□□□ -1.4
USP47-208ENST00000529813 KIF1AQ12756 1690 aa6.32□□□□□ -1.4
USP47-208ENST00000529813 SYTL4Q96C24 671 aaPredicted RBP6.32□□□□□ -1.4
USP47-208ENST00000529813 NSD3Q9BZ95 1437 aa6.32□□□□□ -1.4
USP47-208ENST00000529813 SBNO2Q9Y2G9 1366 aa6.31□□□□□ -1.4
USP47-208ENST00000529813 CGNL1Q0VF96 1302 aa6.31□□□□□ -1.4
USP47-208ENST00000529813 ADGRB2O60241 1585 aa6.31□□□□□ -1.4
USP47-208ENST00000529813 TRIM37O94972 964 aa6.31□□□□□ -1.4
USP47-208ENST00000529813 DDB1Q16531 1140 aa6.31□□□□□ -1.4
USP47-208ENST00000529813 EMILIN1Q9Y6C2 1016 aa6.31□□□□□ -1.4
USP47-208ENST00000529813 SPATA31A5Q5VU36 1347 aa6.31□□□□□ -1.4
USP47-208ENST00000529813 SPATA31A7Q8IWB4 1347 aa6.31□□□□□ -1.4
USP47-208ENST00000529813 RGS12O14924 1447 aa6.31□□□□□ -1.4
USP47-208ENST00000529813 MAP3K19Q56UN5 1328 aa6.31□□□□□ -1.4
USP47-208ENST00000529813 SHPRHQ149N8 1683 aa6.3□□□□□ -1.4
USP47-208ENST00000529813 ACSBG1Q96GR2 724 aa6.3□□□□□ -1.4
USP47-208ENST00000529813 USP19O94966 1318 aa6.3□□□□□ -1.4
USP47-208ENST00000529813 KIF7Q2M1P5 1343 aa6.3□□□□□ -1.4
USP47-208ENST00000529813 SPATA31A1Q5TZJ5 1347 aa6.3□□□□□ -1.4
USP47-208ENST00000529813 EXOC5O00471 708 aa6.3□□□□□ -1.4
USP47-208ENST00000529813 HSP90AB2PQ58FF8 381 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms