RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 RPGRIP1LQ68CZ1 1315 aa10.6□□□□□ -0.71
CD44-228ENST00000528455 HOXB3P14651 431 aaPredicted RBP10.6□□□□□ -0.71
CD44-228ENST00000528455 NBR1Q14596 966 aa10.6□□□□□ -0.71
CD44-228ENST00000528455 PTCD2Q8WV60 388 aaKnown RBP10.6□□□□□ -0.71
CD44-228ENST00000528455 UPF1Q92900 1129 aaKnown RBP eCLIP10.6□□□□□ -0.71
CD44-228ENST00000528455 NEURL4Q96JN8 1562 aa10.6□□□□□ -0.71
CD44-228ENST00000528455 POLR1AO95602 1720 aaPredicted RBP10.59□□□□□ -0.71
CD44-228ENST00000528455 HDGFP51858 240 aaKnown RBP10.59□□□□□ -0.71
CD44-228ENST00000528455 RGL3Q3MIN7 710 aa10.59□□□□□ -0.71
CD44-228ENST00000528455 TONSLQ96HA7 1378 aa10.59□□□□□ -0.71
CD44-228ENST00000528455 IQSEC2Q5JU85 1478 aa10.59□□□□□ -0.71
CD44-228ENST00000528455 PIK3C2BO00750 1634 aa10.58□□□□□ -0.72
CD44-228ENST00000528455 MED14O60244 1454 aa10.58□□□□□ -0.72
CD44-228ENST00000528455 DCAF11Q8TEB1 546 aa10.58□□□□□ -0.72
CD44-228ENST00000528455 NPHP4O75161 1426 aaPredicted RBP10.58□□□□□ -0.72
CD44-228ENST00000528455 SPATA31E1Q6ZUB1 1445 aa10.58□□□□□ -0.72
CD44-228ENST00000528455 SYNMO15061 1565 aa10.57□□□□□ -0.72
CD44-228ENST00000528455 TXNDC2Q86VQ3 553 aa10.57□□□□□ -0.72
CD44-228ENST00000528455 EID1Q9Y6B2 187 aa10.57□□□□□ -0.72
CD44-228ENST00000528455 CLTCL1P53675 1640 aa10.57□□□□□ -0.72
CD44-228ENST00000528455 UBR1Q8IWV7 1749 aa10.56□□□□□ -0.72
CD44-228ENST00000528455 MAP3K9P80192 1104 aa10.56□□□□□ -0.72
CD44-228ENST00000528455 ZNF326Q5BKZ1 582 aaKnown RBP10.56□□□□□ -0.72
CD44-228ENST00000528455 KDM5AP29375 1690 aaKnown RBP10.55□□□□□ -0.72
CD44-228ENST00000528455 LTKP29376 864 aa10.55□□□□□ -0.72
CD44-228ENST00000528455 PDIA6Q15084 440 aa10.55□□□□□ -0.72
CD44-228ENST00000528455 DOK7Q18PE1 504 aa10.55□□□□□ -0.72
CD44-228ENST00000528455 IQGAP1P46940 1657 aa10.54□□□□□ -0.72
CD44-228ENST00000528455 UBAP1LF5GYI3 381 aa10.54□□□□□ -0.72
CD44-228ENST00000528455 SEMA3EO15041 775 aa10.54□□□□□ -0.72
CD44-228ENST00000528455 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.54□□□□□ -0.72
CD44-228ENST00000528455 PCDHGA4Q9Y5G9 962 aa10.54□□□□□ -0.72
CD44-228ENST00000528455 TMEM131LA2VDJ0 1609 aa10.54□□□□□ -0.72
CD44-228ENST00000528455 SCAF11Q99590 1463 aaKnown RBP10.54□□□□□ -0.72
CD44-228ENST00000528455 SLIT1O75093 1534 aa10.53□□□□□ -0.72
CD44-228ENST00000528455 CPS1P31327 1500 aa10.53□□□□□ -0.72
CD44-228ENST00000528455 TMEM2Q9UHN6 1383 aa10.53□□□□□ -0.72
CD44-228ENST00000528455 SPDYE16A6NNV3 312 aaPredicted RBP10.53□□□□□ -0.72
CD44-228ENST00000528455 ARHGAP23Q9P227 1491 aa10.53□□□□□ -0.72
CD44-228ENST00000528455 ZFYVE9O95405 1425 aa10.52□□□□□ -0.73
CD44-228ENST00000528455 TBC1D12O60347 775 aa10.52□□□□□ -0.73
CD44-228ENST00000528455 SNPHO15079 494 aa10.51□□□□□ -0.73
CD44-228ENST00000528455 TOM1O60784 492 aa10.51□□□□□ -0.73
CD44-228ENST00000528455 ADGRB3O60242 1522 aa10.51□□□□□ -0.73
CD44-228ENST00000528455 MYO5BQ9ULV0 1848 aa10.51□□□□□ -0.73
CD44-228ENST00000528455 TESPA1A2RU30 521 aaPredicted RBP10.5□□□□□ -0.73
CD44-228ENST00000528455 NBPF8Q3BBV2 869 aa10.5□□□□□ -0.73
CD44-228ENST00000528455 EVI5O60447 810 aa10.49□□□□□ -0.73
CD44-228ENST00000528455 GPR153Q6NV75 609 aa10.49□□□□□ -0.73
CD44-228ENST00000528455 ZSWIM6Q9HCJ5 1215 aa10.49□□□□□ -0.73
CD44-228ENST00000528455 PPLO60437 1756 aa10.48□□□□□ -0.73
CD44-228ENST00000528455 RIMBP2O15034 1052 aa10.48□□□□□ -0.73
CD44-228ENST00000528455 ARSIQ5FYB1 569 aa10.48□□□□□ -0.73
CD44-228ENST00000528455 C14orf93Q9H972 538 aaKnown RBP10.48□□□□□ -0.73
CD44-228ENST00000528455 ANO8Q9HCE9 1232 aaPredicted RBP10.48□□□□□ -0.73
CD44-228ENST00000528455 ADGRF5Q8IZF2 1346 aa10.48□□□□□ -0.73
CD44-228ENST00000528455 IFT172Q9UG01 1749 aa10.47□□□□□ -0.73
CD44-228ENST00000528455 PIP4K2BP78356 416 aa10.47□□□□□ -0.73
CD44-228ENST00000528455 ZNF710Q8N1W2 664 aa10.47□□□□□ -0.73
CD44-228ENST00000528455 KHSRPQ92945 711 aaKnown RBP eCLIP10.47□□□□□ -0.73
CD44-228ENST00000528455 RIMS2Q9UQ26 1411 aa10.47□□□□□ -0.73
CD44-228ENST00000528455 MLLT3P42568 568 aaPredicted RBP10.46□□□□□ -0.73
CD44-228ENST00000528455 SLC26A8Q96RN1 970 aa10.46□□□□□ -0.73
CD44-228ENST00000528455 PRAG1Q86YV5 1406 aa10.46□□□□□ -0.74
CD44-228ENST00000528455 MYOM2P54296 1465 aa10.46□□□□□ -0.74
CD44-228ENST00000528455 NRXN1Q9ULB1 1477 aa10.46□□□□□ -0.74
CD44-228ENST00000528455 NEXMIFQ5QGS0 1516 aa10.46□□□□□ -0.74
CD44-228ENST00000528455 LRRC7Q96NW7 1537 aa10.46□□□□□ -0.74
CD44-228ENST00000528455 KCNA6P17658 529 aa10.45□□□□□ -0.74
CD44-228ENST00000528455 PTGER2P43116 358 aa10.45□□□□□ -0.74
CD44-228ENST00000528455 NUTM2DQ5VT03 806 aaPredicted RBP10.45□□□□□ -0.74
CD44-228ENST00000528455 STRCP1A6NGW2 1772 aa10.44□□□□□ -0.74
CD44-228ENST00000528455 CFAP70Q5T0N1 1121 aa10.44□□□□□ -0.74
CD44-228ENST00000528455 TBX22Q9Y458 520 aa10.44□□□□□ -0.74
CD44-228ENST00000528455 KIAA1210Q9ULL0 1709 aa10.44□□□□□ -0.74
CD44-228ENST00000528455 PLEKHG1Q9ULL1 1385 aa10.43□□□□□ -0.74
CD44-228ENST00000528455 NUDT7P0C024 238 aa10.43□□□□□ -0.74
CD44-228ENST00000528455 NBPF1Q3BBV0 1214 aa10.43□□□□□ -0.74
CD44-228ENST00000528455 HOXB1P14653 301 aaPredicted RBP10.42□□□□□ -0.74
CD44-228ENST00000528455 PROSER2Q86WR7 435 aaPredicted RBP10.42□□□□□ -0.74
CD44-228ENST00000528455 CARD11Q9BXL7 1154 aa10.42□□□□□ -0.74
CD44-228ENST00000528455 PIK3C2GO75747 1445 aa10.41□□□□□ -0.74
CD44-228ENST00000528455 ZNF316A6NFI3 1004 aaPredicted RBP10.41□□□□□ -0.74
CD44-228ENST00000528455 EIF4G2P78344 907 aaKnown RBP eCLIP10.41□□□□□ -0.74
CD44-228ENST00000528455 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.41□□□□□ -0.74
CD44-228ENST00000528455 GPRASP1Q5JY77 1395 aa10.4□□□□□ -0.74
CD44-228ENST00000528455 TRPM1Q7Z4N2 1603 aa10.4□□□□□ -0.74
CD44-228ENST00000528455 DISP3Q9P2K9 1392 aa10.4□□□□□ -0.74
CD44-228ENST00000528455 HSPA1LP34931 641 aa10.4□□□□□ -0.74
CD44-228ENST00000528455 DDX12PQ92771 950 aa10.4□□□□□ -0.74
CD44-228ENST00000528455 SIRT1Q96EB6 747 aa10.4□□□□□ -0.74
CD44-228ENST00000528455 RALGAPBQ86X10 1494 aa10.4□□□□□ -0.74
CD44-228ENST00000528455 ROCK2O75116 1388 aaKnown RBP10.39□□□□□ -0.75
CD44-228ENST00000528455 TMEM94Q12767 1356 aa10.39□□□□□ -0.75
CD44-228ENST00000528455 GRXCR2A6NFK2 248 aa10.39□□□□□ -0.75
CD44-228ENST00000528455 SMYD5Q6GMV2 418 aa10.39□□□□□ -0.75
CD44-228ENST00000528455 SETBP1Q9Y6X0 1596 aa10.39□□□□□ -0.75
CD44-228ENST00000528455 ALKQ9UM73 1620 aa10.38□□□□□ -0.75
CD44-228ENST00000528455 ST18O60284 1047 aa10.38□□□□□ -0.75
CD44-228ENST00000528455 TMEM132EQ6IEE7 984 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms