RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 BTG4Q9NY30 223 aa34.59■■■■□ 3.13
CPSF1-202ENST00000527827 SF3B2Q13435 895 aaKnown RBP34.56■■■■□ 3.12
CPSF1-202ENST00000527827 NGDNQ8NEJ9 315 aaKnown RBP34.55■■■■□ 3.12
CPSF1-202ENST00000527827 HRCP23327 699 aa34.54■■■■□ 3.12
CPSF1-202ENST00000527827 ITSN1Q15811 1721 aa34.53■■■■□ 3.12
CPSF1-202ENST00000527827 FAM98CQ17RN3 349 aaKnown RBP34.53■■■■□ 3.12
CPSF1-202ENST00000527827 ATP7BP35670 1465 aa34.52■■■■□ 3.12
CPSF1-202ENST00000527827 A0A0G2JS52 829 aa34.5■■■■□ 3.11
CPSF1-202ENST00000527827 PAK3O75914 559 aaPredicted RBP34.5■■■■□ 3.11
CPSF1-202ENST00000527827 MYT1Q01538 1121 aa34.5■■■■□ 3.11
CPSF1-202ENST00000527827 NUDT16Q96DE0 195 aaKnown RBP34.48■■■■□ 3.11
CPSF1-202ENST00000527827 SPATA31A5Q5VU36 1347 aa34.47■■■■□ 3.11
CPSF1-202ENST00000527827 SPATA31A7Q8IWB4 1347 aa34.47■■■■□ 3.11
CPSF1-202ENST00000527827 PRDM11Q9NQV5 511 aa34.44■■■■□ 3.1
CPSF1-202ENST00000527827 THSD7AQ9UPZ6 1657 aa34.43■■■■□ 3.1
CPSF1-202ENST00000527827 PHRF1Q9P1Y6 1649 aaKnown RBP34.42■■■■□ 3.1
CPSF1-202ENST00000527827 TOPAZ1Q8N9V7 1692 aa34.41■■■■□ 3.1
CPSF1-202ENST00000527827 CDK19Q9BWU1 502 aa34.41■■■■□ 3.1
CPSF1-202ENST00000527827 BAG6P46379 1132 aa34.4■■■■□ 3.1
CPSF1-202ENST00000527827 KIAA1210Q9ULL0 1709 aa34.4■■■■□ 3.1
CPSF1-202ENST00000527827 KIAA0232Q92628 1395 aa34.39■■■■□ 3.1
CPSF1-202ENST00000527827 RGPD1P0DJD0 1748 aa34.38■■■■□ 3.09
CPSF1-202ENST00000527827 FAM182BQ5T319 152 aa34.38■■■■□ 3.09
CPSF1-202ENST00000527827 POLR3AO14802 1390 aaPredicted RBP34.37■■■■□ 3.09
CPSF1-202ENST00000527827 CHRNA2Q15822 529 aa34.35■■■■□ 3.09
CPSF1-202ENST00000527827 ACEP12821 1306 aa34.34■■■■□ 3.09
CPSF1-202ENST00000527827 LRP5O75197 1615 aa34.34■■■■□ 3.09
CPSF1-202ENST00000527827 SPATA31A1Q5TZJ5 1347 aa34.33■■■■□ 3.09
CPSF1-202ENST00000527827 NUTM2GQ5VZR2 741 aa34.33■■■■□ 3.09
CPSF1-202ENST00000527827 NBPF8Q3BBV2 869 aa34.32■■■■□ 3.08
CPSF1-202ENST00000527827 CCDC61Q9Y6R9 512 aa34.32■■■■□ 3.08
CPSF1-202ENST00000527827 TNS1Q9HBL0 1735 aaKnown RBP34.31■■■■□ 3.08
CPSF1-202ENST00000527827 PLEKHG3A1L390 1219 aa34.31■■■■□ 3.08
CPSF1-202ENST00000527827 ZC3H6P61129 1189 aaKnown RBP34.31■■■■□ 3.08
CPSF1-202ENST00000527827 EN1Q05925 392 aaPredicted RBP34.3■■■■□ 3.08
CPSF1-202ENST00000527827 PSDA5PKW4 1024 aaPredicted RBP34.29■■■■□ 3.08
CPSF1-202ENST00000527827 NBPF1Q3BBV0 1214 aa34.29■■■■□ 3.08
CPSF1-202ENST00000527827 STRN4Q9NRL3 753 aa34.29■■■■□ 3.08
CPSF1-202ENST00000527827 DISP2A7MBM2 1401 aa34.27■■■■□ 3.08
CPSF1-202ENST00000527827 NRKQ7Z2Y5 1582 aa34.27■■■■□ 3.08
CPSF1-202ENST00000527827 ABTB2Q8N961 1025 aa34.22■■■■□ 3.07
CPSF1-202ENST00000527827 CAMTA1Q9Y6Y1 1673 aa34.22■■■■□ 3.07
CPSF1-202ENST00000527827 SSH2Q76I76 1423 aa34.21■■■■□ 3.07
CPSF1-202ENST00000527827 LMO7Q8WWI1 1683 aa34.21■■■■□ 3.07
CPSF1-202ENST00000527827 USP19O94966 1318 aa34.2■■■■□ 3.07
CPSF1-202ENST00000527827 CPDO75976 1380 aa34.19■■■■□ 3.06
CPSF1-202ENST00000527827 FAM196AQ6ZSG2 479 aa34.18■■■■□ 3.06
CPSF1-202ENST00000527827 USP35Q9P2H5 1018 aa34.18■■■■□ 3.06
CPSF1-202ENST00000527827 PPIP5K1Q6PFW1 1433 aa34.18■■■■□ 3.06
CPSF1-202ENST00000527827 EVA1CP58658 441 aa34.17■■■■□ 3.06
CPSF1-202ENST00000527827 BARGINQ6ZT62 677 aa34.17■■■■□ 3.06
CPSF1-202ENST00000527827 CENPJQ9HC77 1338 aaPredicted RBP34.17■■■■□ 3.06
CPSF1-202ENST00000527827 TRIM37O94972 964 aa34.16■■■■□ 3.06
CPSF1-202ENST00000527827 SRPK2P78362 688 aaKnown RBP34.16■■■■□ 3.06
CPSF1-202ENST00000527827 EZH2Q15910 746 aaKnown RBP34.16■■■■□ 3.06
CPSF1-202ENST00000527827 LARP1Q6PKG0 1096 aaKnown RBP34.15■■■■□ 3.06
CPSF1-202ENST00000527827 CAMKK2Q96RR4 588 aa34.14■■■■□ 3.06
CPSF1-202ENST00000527827 CABP2Q9NPB3 220 aa34.14■■■■□ 3.06
CPSF1-202ENST00000527827 QRICH2Q9H0J4 1663 aa34.14■■■■□ 3.06
CPSF1-202ENST00000527827 R3HDM1Q15032 1099 aaKnown RBP34.13■■■■□ 3.05
CPSF1-202ENST00000527827 NLRP13Q86W25 1043 aa34.12■■■■□ 3.05
CPSF1-202ENST00000527827 GCP02774 474 aa34.11■■■■□ 3.05
CPSF1-202ENST00000527827 TCP11L2Q8N4U5 519 aa34.09■■■■□ 3.05
CPSF1-202ENST00000527827 PDE3BQ13370 1112 aa34.08■■■■□ 3.05
CPSF1-202ENST00000527827 BRD4O60885 1362 aaPredicted RBP34.08■■■■□ 3.05
CPSF1-202ENST00000527827 APBA3O96018 575 aa34.07■■■■□ 3.04
CPSF1-202ENST00000527827 COL5A2P05997 1499 aaPredicted RBP34.06■■■■□ 3.04
CPSF1-202ENST00000527827 CABP1Q9NZU7 370 aa34.05■■■■□ 3.04
CPSF1-202ENST00000527827 RREB1Q92766 1687 aa34.05■■■■□ 3.04
CPSF1-202ENST00000527827 USP6P35125 1406 aa34.04■■■■□ 3.04
CPSF1-202ENST00000527827 PARD3Q8TEW0 1356 aa34.04■■■■□ 3.04
CPSF1-202ENST00000527827 THRAP3Q9Y2W1 955 aaKnown RBP34.04■■■■□ 3.04
CPSF1-202ENST00000527827 PARP4Q9UKK3 1724 aaKnown RBP34.04■■■■□ 3.04
CPSF1-202ENST00000527827 L3MBTL2Q969R5 705 aa34.02■■■■□ 3.04
CPSF1-202ENST00000527827 SLIT3O75094 1523 aa34.01■■■■□ 3.04
CPSF1-202ENST00000527827 NUP188Q5SRE5 1749 aa33.99■■■■□ 3.03
CPSF1-202ENST00000527827 NLRP6P59044 892 aa33.99■■■■□ 3.03
CPSF1-202ENST00000527827 CRB1P82279 1406 aa33.98■■■■□ 3.03
CPSF1-202ENST00000527827 TRPM1Q7Z4N2 1603 aa33.98■■■■□ 3.03
CPSF1-202ENST00000527827 PIK3C2AO00443 1686 aa33.98■■■■□ 3.03
CPSF1-202ENST00000527827 AATKQ6ZMQ8 1374 aa33.97■■■■□ 3.03
CPSF1-202ENST00000527827 COL18A1P39060 1754 aa33.96■■■■□ 3.03
CPSF1-202ENST00000527827 ZBTB7CA1YPR0 619 aa33.95■■■■□ 3.03
CPSF1-202ENST00000527827 EVC2Q86UK5 1308 aa33.94■■■■□ 3.02
CPSF1-202ENST00000527827 PEAK1Q9H792 1746 aa33.93■■■■□ 3.02
CPSF1-202ENST00000527827 SIN3AQ96ST3 1273 aa33.91■■■■□ 3.02
CPSF1-202ENST00000527827 LRRC37A3O60309 1634 aa33.9■■■■□ 3.02
CPSF1-202ENST00000527827 AKAP12Q02952 1782 aa33.89■■■■□ 3.02
CPSF1-202ENST00000527827 SBF2Q86WG5 1849 aa33.88■■■■□ 3.01
CPSF1-202ENST00000527827 AXIN2Q9Y2T1 843 aa33.87■■■■□ 3.01
CPSF1-202ENST00000527827 OVOS2A0A0G2JMS6 1433 aa33.87■■■■□ 3.01
CPSF1-202ENST00000527827 OVOS2A0A0J9YW53 1432 aa33.87■■■■□ 3.01
CPSF1-202ENST00000527827 OVOS2Q6IE36 1432 aa33.87■■■■□ 3.01
CPSF1-202ENST00000527827 WNK3Q9BYP7 1800 aa33.86■■■■□ 3.01
CPSF1-202ENST00000527827 C11orf95C9JLR9 678 aaPredicted RBP33.86■■■■□ 3.01
CPSF1-202ENST00000527827 NBPF14Q5TI25 921 aa33.86■■■■□ 3.01
CPSF1-202ENST00000527827 TOM1L2Q6ZVM7 507 aa33.85■■■■□ 3.01
CPSF1-202ENST00000527827 TTC21BQ7Z4L5 1316 aa33.84■■■■□ 3.01
CPSF1-202ENST00000527827 RGPD5Q99666 1765 aa33.84■■■■□ 3.01
CPSF1-202ENST00000527827 CPSF1Q10570 1443 aaKnown RBP33.84■■■■□ 3.01
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms