RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 ACIN1Q9UKV3 1341 aaKnown RBP8.4□□□□□ -1.06
CD44-220ENST00000525688 FBXO45P0C2W1 286 aa8.4□□□□□ -1.06
CD44-220ENST00000525688 CCNYL3P0C7X3 344 aa8.4□□□□□ -1.06
CD44-220ENST00000525688 UCN2Q96RP3 112 aa8.4□□□□□ -1.06
CD44-220ENST00000525688 GPSM3Q9Y4H4 160 aa8.4□□□□□ -1.06
CD44-220ENST00000525688 PALM3A6NDB9 673 aaPredicted RBP8.39□□□□□ -1.07
CD44-220ENST00000525688 ZPR1O75312 459 aa8.39□□□□□ -1.07
CD44-220ENST00000525688 COPS2P61201 443 aa8.39□□□□□ -1.07
CD44-220ENST00000525688 KCNH2Q12809 1159 aa8.39□□□□□ -1.07
CD44-220ENST00000525688 ARMC2Q8NEN0 867 aa8.39□□□□□ -1.07
CD44-220ENST00000525688 GPKOWQ92917 476 aaPredicted RBP eCLIP8.39□□□□□ -1.07
CD44-220ENST00000525688 KCTD12Q96CX2 325 aaKnown RBP8.39□□□□□ -1.07
CD44-220ENST00000525688 NUDT12Q9BQG2 462 aa8.39□□□□□ -1.07
CD44-220ENST00000525688 ADH1BP00325 375 aa8.38□□□□□ -1.07
CD44-220ENST00000525688 PDXDC2PQ6P474 469 aa8.38□□□□□ -1.07
CD44-220ENST00000525688 RETREG2Q8NC44 543 aa8.38□□□□□ -1.07
CD44-220ENST00000525688 POTEMA6NI47 508 aa8.37□□□□□ -1.07
CD44-220ENST00000525688 CTHP32929 405 aa8.37□□□□□ -1.07
CD44-220ENST00000525688 PDE4CQ08493 712 aa8.37□□□□□ -1.07
CD44-220ENST00000525688 MTRQ99707 1265 aa8.37□□□□□ -1.07
CD44-220ENST00000525688 TFIP11Q9UBB9 837 aaKnown RBP8.37□□□□□ -1.07
CD44-220ENST00000525688 MYT1LQ9UL68 1186 aa8.37□□□□□ -1.07
CD44-220ENST00000525688 NISCHQ9Y2I1 1504 aa8.37□□□□□ -1.07
CD44-220ENST00000525688 PODXL2Q9NZ53 605 aa8.36□□□□□ -1.07
CD44-220ENST00000525688 TJAP1Q5JTD0 557 aa8.35□□□□□ -1.07
CD44-220ENST00000525688 PRDM9Q9NQV7 894 aa8.35□□□□□ -1.07
CD44-220ENST00000525688 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.34□□□□□ -1.07
CD44-220ENST00000525688 TLL1O43897 1013 aa8.34□□□□□ -1.07
CD44-220ENST00000525688 RFX1P22670 979 aa8.34□□□□□ -1.07
CD44-220ENST00000525688 LMOD1P29536 600 aaPredicted RBP8.34□□□□□ -1.07
CD44-220ENST00000525688 MCCD1P59942 119 aaPredicted RBP8.34□□□□□ -1.07
CD44-220ENST00000525688 PTK2Q05397 1052 aa8.34□□□□□ -1.07
CD44-220ENST00000525688 NBPF14Q5TI25 921 aa8.34□□□□□ -1.07
CD44-220ENST00000525688 KCTD17Q8N5Z5 321 aa8.34□□□□□ -1.07
CD44-220ENST00000525688 NFATC2IPQ8NCF5 419 aa8.34□□□□□ -1.07
CD44-220ENST00000525688 ZNF592Q92610 1267 aa8.34□□□□□ -1.07
CD44-220ENST00000525688 IL21Q9HBE4 155 aa8.34□□□□□ -1.07
CD44-220ENST00000525688 MAFBQ9Y5Q3 323 aaPredicted RBP8.34□□□□□ -1.07
CD44-220ENST00000525688 ATP9BO43861 1147 aa8.33□□□□□ -1.08
CD44-220ENST00000525688 TBC1D9Q6ZT07 1266 aa8.33□□□□□ -1.08
CD44-220ENST00000525688 OCSTAMPQ9BR26 566 aa8.33□□□□□ -1.08
CD44-220ENST00000525688 ZBTB7CA1YPR0 619 aa8.32□□□□□ -1.08
CD44-220ENST00000525688 SLC6A16Q9GZN6 736 aa8.32□□□□□ -1.08
CD44-220ENST00000525688 USTQ9Y2C2 406 aa8.32□□□□□ -1.08
CD44-220ENST00000525688 ATG7O95352 703 aa8.31□□□□□ -1.08
CD44-220ENST00000525688 ZNF516Q92618 1163 aa8.31□□□□□ -1.08
CD44-220ENST00000525688 UNC93B1Q9H1C4 597 aa8.31□□□□□ -1.08
CD44-220ENST00000525688 PTPN5P54829 565 aa8.3□□□□□ -1.08
CD44-220ENST00000525688 PTCRAQ6ISU1 281 aaPredicted RBP8.3□□□□□ -1.08
CD44-220ENST00000525688 CDAN1Q8IWY9 1227 aa8.3□□□□□ -1.08
CD44-220ENST00000525688 SH3BP5LQ7L8J4 393 aa8.29□□□□□ -1.08
CD44-220ENST00000525688 CEP126Q9P2H0 1117 aa8.29□□□□□ -1.08
CD44-220ENST00000525688 PIK3CDO00329 1044 aa8.28□□□□□ -1.08
CD44-220ENST00000525688 CSB-PGBD3P0DP91 1061 aa8.28□□□□□ -1.08
CD44-220ENST00000525688 KANK4Q5T7N3 995 aaPredicted RBP8.28□□□□□ -1.08
CD44-220ENST00000525688 PLEKHM2Q8IWE5 1019 aa8.28□□□□□ -1.08
CD44-220ENST00000525688 PHTF2Q8N3S3 785 aa8.28□□□□□ -1.08
CD44-220ENST00000525688 POTEGQ6S5H5 508 aa8.27□□□□□ -1.09
CD44-220ENST00000525688 SH3RF1Q7Z6J0 888 aa8.27□□□□□ -1.09
CD44-220ENST00000525688 CCDC24Q8N4L8 307 aa8.27□□□□□ -1.09
CD44-220ENST00000525688 ADAM32Q8TC27 787 aa8.27□□□□□ -1.09
CD44-220ENST00000525688 ARHGAP9Q9BRR9 750 aa8.27□□□□□ -1.09
CD44-220ENST00000525688 VRTNQ9H8Y1 702 aa8.27□□□□□ -1.09
CD44-220ENST00000525688 CHIC2Q9UKJ5 165 aa8.27□□□□□ -1.09
CD44-220ENST00000525688 LZTS3O60299 673 aaPredicted RBP8.26□□□□□ -1.09
CD44-220ENST00000525688 ELOAQ14241 798 aaKnown RBP8.26□□□□□ -1.09
CD44-220ENST00000525688 PCDHB9Q9Y5E1 797 aa8.26□□□□□ -1.09
CD44-220ENST00000525688 SKIP12755 728 aa8.25□□□□□ -1.09
CD44-220ENST00000525688 ZBTB33Q86T24 672 aa8.25□□□□□ -1.09
CD44-220ENST00000525688 FAM174AQ8TBP5 190 aa8.25□□□□□ -1.09
CD44-220ENST00000525688 USP17L3A6NCW0 530 aa8.24□□□□□ -1.09
CD44-220ENST00000525688 USP17L4A6NCW7 530 aa8.24□□□□□ -1.09
CD44-220ENST00000525688 USP17L5A8MUK1 530 aa8.24□□□□□ -1.09
CD44-220ENST00000525688 S1PR4O95977 384 aa8.24□□□□□ -1.09
CD44-220ENST00000525688 SLFNL1Q499Z3 407 aa8.24□□□□□ -1.09
CD44-220ENST00000525688 USP17L2Q6R6M4 530 aa8.24□□□□□ -1.09
CD44-220ENST00000525688 USP17L1Q7RTZ2 530 aa8.24□□□□□ -1.09
CD44-220ENST00000525688 NKX2-3Q8TAU0 364 aa8.24□□□□□ -1.09
CD44-220ENST00000525688 TMEM88BA6NKF7 163 aa8.23□□□□□ -1.09
CD44-220ENST00000525688 BRD1O95696 1058 aa8.23□□□□□ -1.09
CD44-220ENST00000525688 MAP7D1Q3KQU3 841 aa8.23□□□□□ -1.09
CD44-220ENST00000525688 BPHLQ86WA6 291 aaPredicted RBP8.23□□□□□ -1.09
CD44-220ENST00000525688 RNF135Q8IUD6 432 aa8.23□□□□□ -1.09
CD44-220ENST00000525688 AEBP1Q8IUX7 1158 aa8.23□□□□□ -1.09
CD44-220ENST00000525688 FCF1Q9Y324 198 aaKnown RBP8.23□□□□□ -1.09
CD44-220ENST00000525688 PATL2C9JE40 543 aaKnown RBP8.22□□□□□ -1.09
CD44-220ENST00000525688 CDCA8Q53HL2 280 aa8.22□□□□□ -1.09
CD44-220ENST00000525688 ZNF511Q8NB15 262 aa8.22□□□□□ -1.09
CD44-220ENST00000525688 BAP1Q92560 729 aa8.22□□□□□ -1.09
CD44-220ENST00000525688 FAM196BA6NMK8 535 aa8.21□□□□□ -1.1
CD44-220ENST00000525688 ITGBL1O95965 494 aaPredicted RBP8.21□□□□□ -1.1
CD44-220ENST00000525688 PLPP7Q8NBV4 271 aa8.21□□□□□ -1.1
CD44-220ENST00000525688 KCNA1Q09470 495 aa8.2□□□□□ -1.1
CD44-220ENST00000525688 ERFEQ4G0M1 354 aa8.2□□□□□ -1.1
CD44-220ENST00000525688 C4orf48Q5BLP8 95 aa8.2□□□□□ -1.1
CD44-220ENST00000525688 TRAF7Q6Q0C0 670 aa8.2□□□□□ -1.1
CD44-220ENST00000525688 DZIP3Q86Y13 1208 aaKnown RBP8.2□□□□□ -1.1
CD44-220ENST00000525688 C1QTNF2Q9BXJ5 285 aa8.2□□□□□ -1.1
CD44-220ENST00000525688 HCSTQ9UBK5 93 aa8.2□□□□□ -1.1
CD44-220ENST00000525688 MKRN1Q9UHC7 482 aaKnown RBP8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms