RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 PTGDRQ13258 359 aa7.73□□□□□ -1.17
CD44-218ENST00000525469 POTEAQ6S8J7 498 aa7.73□□□□□ -1.17
CD44-218ENST00000525469 PADI6Q6TGC4 694 aa7.73□□□□□ -1.17
CD44-218ENST00000525469 ERICH6Q7L0X2 663 aa7.73□□□□□ -1.17
CD44-218ENST00000525469 TATDN2Q93075 761 aa7.73□□□□□ -1.17
CD44-218ENST00000525469 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.73□□□□□ -1.17
CD44-218ENST00000525469 MLH3Q9UHC1 1453 aa7.73□□□□□ -1.17
CD44-218ENST00000525469 CDK13Q14004 1512 aaKnown RBP7.72□□□□□ -1.17
CD44-218ENST00000525469 ANKLE2Q86XL3 938 aa7.71□□□□□ -1.18
CD44-218ENST00000525469 NPDC1Q9NQX5 325 aaPredicted RBP7.71□□□□□ -1.18
CD44-218ENST00000525469 DNMT1P26358 1616 aaKnown RBP7.7□□□□□ -1.18
CD44-218ENST00000525469 KIF14Q15058 1648 aa7.7□□□□□ -1.18
CD44-218ENST00000525469 KIDINS220Q9ULH0 1771 aa7.7□□□□□ -1.18
CD44-218ENST00000525469 HIC1Q14526 733 aa7.7□□□□□ -1.18
CD44-218ENST00000525469 NUDT18Q6ZVK8 323 aa7.7□□□□□ -1.18
CD44-218ENST00000525469 TTC13Q8NBP0 860 aa7.7□□□□□ -1.18
CD44-218ENST00000525469 CDC42BPBQ9Y5S2 1711 aa7.69□□□□□ -1.18
CD44-218ENST00000525469 A2ML1A8K2U0 1454 aa7.69□□□□□ -1.18
CD44-218ENST00000525469 ZEB1P37275 1124 aaPredicted RBP7.69□□□□□ -1.18
CD44-218ENST00000525469 BCAMP50895 628 aa7.69□□□□□ -1.18
CD44-218ENST00000525469 GGT6Q6P531 493 aa7.69□□□□□ -1.18
CD44-218ENST00000525469 RBM46Q8TBY0 533 aaKnown RBP7.69□□□□□ -1.18
CD44-218ENST00000525469 DAXXQ9UER7 740 aaPredicted RBP7.69□□□□□ -1.18
CD44-218ENST00000525469 TSR3Q9UJK0 312 aaKnown RBP7.69□□□□□ -1.18
CD44-218ENST00000525469 RNF17Q9BXT8 1623 aaKnown RBP7.69□□□□□ -1.18
CD44-218ENST00000525469 ITSN2Q9NZM3 1697 aa7.69□□□□□ -1.18
CD44-218ENST00000525469 CLIP1P30622 1438 aa7.69□□□□□ -1.18
CD44-218ENST00000525469 ALKQ9UM73 1620 aa7.68□□□□□ -1.18
CD44-218ENST00000525469 SMAPO00193 183 aa7.68□□□□□ -1.18
CD44-218ENST00000525469 GPIHBP1Q8IV16 184 aa7.68□□□□□ -1.18
CD44-218ENST00000525469 PLA2G2EQ9NZK7 142 aa7.68□□□□□ -1.18
CD44-218ENST00000525469 FAM198AQ9UFP1 575 aa7.68□□□□□ -1.18
CD44-218ENST00000525469 HPS5Q9UPZ3 1129 aa7.67□□□□□ -1.18
CD44-218ENST00000525469 VWDEQ8N2E2 1590 aa7.67□□□□□ -1.18
CD44-218ENST00000525469 NEURL4Q96JN8 1562 aa7.67□□□□□ -1.18
CD44-218ENST00000525469 RNF40O75150 1001 aa7.66□□□□□ -1.18
CD44-218ENST00000525469 PPP4CP60510 307 aa7.66□□□□□ -1.18
CD44-218ENST00000525469 RBM26Q5T8P6 1007 aaKnown RBP7.66□□□□□ -1.18
CD44-218ENST00000525469 SAMD7Q7Z3H4 446 aa7.66□□□□□ -1.18
CD44-218ENST00000525469 SLF2Q8IX21 1173 aa7.66□□□□□ -1.18
CD44-218ENST00000525469 THEMISQ8N1K5 641 aaPredicted RBP7.66□□□□□ -1.18
CD44-218ENST00000525469 SYNMO15061 1565 aa7.66□□□□□ -1.18
CD44-218ENST00000525469 GNPATO15228 680 aa7.65□□□□□ -1.18
CD44-218ENST00000525469 SPAG9O60271 1321 aaKnown RBP7.65□□□□□ -1.18
CD44-218ENST00000525469 NPHP4O75161 1426 aaPredicted RBP7.65□□□□□ -1.18
CD44-218ENST00000525469 OATP04181 439 aa7.65□□□□□ -1.18
CD44-218ENST00000525469 DNAJB2P25686 324 aa7.65□□□□□ -1.18
CD44-218ENST00000525469 ABCC1P33527 1531 aa7.65□□□□□ -1.18
CD44-218ENST00000525469 IQGAP1P46940 1657 aa7.65□□□□□ -1.18
CD44-218ENST00000525469 STRCP1A6NGW2 1772 aa7.64□□□□□ -1.19
CD44-218ENST00000525469 LRRC7Q96NW7 1537 aa7.64□□□□□ -1.19
CD44-218ENST00000525469 TROQ12816 1431 aaPredicted RBP7.64□□□□□ -1.19
CD44-218ENST00000525469 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.64□□□□□ -1.19
CD44-218ENST00000525469 TRIM52Q96A61 297 aa7.64□□□□□ -1.19
CD44-218ENST00000525469 PRR14Q9BWN1 585 aa7.64□□□□□ -1.19
CD44-218ENST00000525469 ZNF777Q9ULD5 760 aaPredicted RBP7.64□□□□□ -1.19
CD44-218ENST00000525469 DEPDC5O75140 1603 aa7.63□□□□□ -1.19
CD44-218ENST00000525469 PREX2Q70Z35 1606 aa7.63□□□□□ -1.19
CD44-218ENST00000525469 TNRQ92752 1358 aa7.63□□□□□ -1.19
CD44-218ENST00000525469 WBP1LQ9NX94 342 aa7.63□□□□□ -1.19
CD44-218ENST00000525469 ADGRG1Q9Y653 693 aa7.63□□□□□ -1.19
CD44-218ENST00000525469 SAMD9LQ8IVG5 1584 aa7.63□□□□□ -1.19
CD44-218ENST00000525469 FAM135AQ9P2D6 1515 aa7.62□□□□□ -1.19
CD44-218ENST00000525469 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.62□□□□□ -1.19
CD44-218ENST00000525469 MEX3CQ5U5Q3 659 aaKnown RBP7.62□□□□□ -1.19
CD44-218ENST00000525469 EYA1Q99502 592 aa7.62□□□□□ -1.19
CD44-218ENST00000525469 MED14O60244 1454 aa7.62□□□□□ -1.19
CD44-218ENST00000525469 A2MP01023 1474 aa7.62□□□□□ -1.19
CD44-218ENST00000525469 SWT1Q5T5J6 900 aaKnown RBP7.61□□□□□ -1.19
CD44-218ENST00000525469 IFFO2Q5TF58 517 aa7.61□□□□□ -1.19
CD44-218ENST00000525469 ZNF772Q68DY9 489 aaPredicted RBP7.61□□□□□ -1.19
CD44-218ENST00000525469 UGGT1Q9NYU2 1555 aa7.61□□□□□ -1.19
CD44-218ENST00000525469 CDC42BPAQ5VT25 1732 aa7.61□□□□□ -1.19
CD44-218ENST00000525469 FAM135BQ49AJ0 1406 aa7.61□□□□□ -1.19
CD44-218ENST00000525469 FMN1Q68DA7 1419 aa7.61□□□□□ -1.19
CD44-218ENST00000525469 ADGBQ8N7X0 1667 aa7.6□□□□□ -1.19
CD44-218ENST00000525469 XIRP1Q702N8 1843 aaKnown RBP7.6□□□□□ -1.19
CD44-218ENST00000525469 RSPH4AQ5TD94 716 aa7.6□□□□□ -1.19
CD44-218ENST00000525469 FBXO31Q5XUX0 539 aaPredicted RBP7.6□□□□□ -1.19
CD44-218ENST00000525469 ATP7AQ04656 1500 aa7.6□□□□□ -1.19
CD44-218ENST00000525469 PHLPP1O60346 1717 aa7.59□□□□□ -1.19
CD44-218ENST00000525469 CFAP65Q6ZU64 1925 aaKnown RBP7.59□□□□□ -1.19
CD44-218ENST00000525469 PRKCSHP14314 528 aaPredicted RBP7.59□□□□□ -1.19
CD44-218ENST00000525469 RXRBP28702 533 aa7.59□□□□□ -1.19
CD44-218ENST00000525469 TMEM134Q9H6X4 195 aa7.59□□□□□ -1.19
CD44-218ENST00000525469 ROBO1Q9Y6N7 1651 aa7.59□□□□□ -1.19
CD44-218ENST00000525469 NLRP1Q9C000 1473 aa7.58□□□□□ -1.2
CD44-218ENST00000525469 RCCD1A6NED2 376 aa7.58□□□□□ -1.2
CD44-218ENST00000525469 C3orf80F5H4A9 247 aa7.58□□□□□ -1.2
CD44-218ENST00000525469 ITGBL1O95965 494 aaPredicted RBP7.58□□□□□ -1.2
CD44-218ENST00000525469 HNRNPMP52272 730 aaKnown RBP eCLIP7.58□□□□□ -1.2
CD44-218ENST00000525469 PLXNC1O60486 1568 aa7.58□□□□□ -1.2
CD44-218ENST00000525469 JCADQ9P266 1359 aa7.58□□□□□ -1.2
CD44-218ENST00000525469 SYCP2Q9BX26 1530 aa7.57□□□□□ -1.2
CD44-218ENST00000525469 WASHC2CQ9Y4E1 1318 aa7.57□□□□□ -1.2
CD44-218ENST00000525469 GPR37O15354 613 aa7.57□□□□□ -1.2
CD44-218ENST00000525469 KCNC4Q03721 635 aa7.57□□□□□ -1.2
CD44-218ENST00000525469 METTL3Q86U44 580 aaKnown RBP7.57□□□□□ -1.2
CD44-218ENST00000525469 PXYLP1Q8TE99 480 aa7.57□□□□□ -1.2
CD44-218ENST00000525469 BCANQ96GW7 911 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms