RNA–Protein interactions for RNA: ENST00000524797.1

TRAPPC4-204, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2

Gene TRAPPC4, Length 1,924 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-204ENST00000524797 CCDC61Q9Y6R9 512 aa15.99■□□□□ 0.15
TRAPPC4-204ENST00000524797 PHRF1Q9P1Y6 1649 aaKnown RBP15.99■□□□□ 0.15
TRAPPC4-204ENST00000524797 NRAPQ86VF7 1730 aa15.98■□□□□ 0.15
TRAPPC4-204ENST00000524797 COL14A1Q05707 1796 aaKnown RBP15.98■□□□□ 0.15
TRAPPC4-204ENST00000524797 SRPK2P78362 688 aaKnown RBP15.98■□□□□ 0.15
TRAPPC4-204ENST00000524797 RALGAPBQ86X10 1494 aa15.97■□□□□ 0.15
TRAPPC4-204ENST00000524797 ACEP12821 1306 aa15.97■□□□□ 0.15
TRAPPC4-204ENST00000524797 PPIP5K1Q6PFW1 1433 aa15.97■□□□□ 0.15
TRAPPC4-204ENST00000524797 CABP2Q9NPB3 220 aa15.97■□□□□ 0.15
TRAPPC4-204ENST00000524797 GLI3P10071 1580 aa15.97■□□□□ 0.15
TRAPPC4-204ENST00000524797 PAK3O75914 559 aaPredicted RBP15.96■□□□□ 0.15
TRAPPC4-204ENST00000524797 UNC5CLQ8IV45 518 aa15.96■□□□□ 0.15
TRAPPC4-204ENST00000524797 EVC2Q86UK5 1308 aa15.94■□□□□ 0.14
TRAPPC4-204ENST00000524797 AKAP12Q02952 1782 aa15.94■□□□□ 0.14
TRAPPC4-204ENST00000524797 UPF1Q92900 1129 aaKnown RBP eCLIP15.94■□□□□ 0.14
TRAPPC4-204ENST00000524797 GJD4Q96KN9 370 aaPredicted RBP15.94■□□□□ 0.14
TRAPPC4-204ENST00000524797 FAM83GA6ND36 823 aa15.93■□□□□ 0.14
TRAPPC4-204ENST00000524797 BRWD3Q6RI45 1802 aa15.92■□□□□ 0.14
TRAPPC4-204ENST00000524797 CARD11Q9BXL7 1154 aa15.91■□□□□ 0.14
TRAPPC4-204ENST00000524797 NRKQ7Z2Y5 1582 aa15.91■□□□□ 0.14
TRAPPC4-204ENST00000524797 VPS72Q15906 364 aa15.9■□□□□ 0.14
TRAPPC4-204ENST00000524797 CABP1Q9NZU7 370 aa15.9■□□□□ 0.14
TRAPPC4-204ENST00000524797 BRD4O60885 1362 aaPredicted RBP15.89■□□□□ 0.14
TRAPPC4-204ENST00000524797 SBNO2Q9Y2G9 1366 aa15.89■□□□□ 0.14
TRAPPC4-204ENST00000524797 NUTM2GQ5VZR2 741 aa15.89■□□□□ 0.13
TRAPPC4-204ENST00000524797 USP6P35125 1406 aa15.89■□□□□ 0.13
TRAPPC4-204ENST00000524797 ATAD2Q6PL18 1390 aa15.88■□□□□ 0.13
TRAPPC4-204ENST00000524797 PIK3C2AO00443 1686 aa15.88■□□□□ 0.13
TRAPPC4-204ENST00000524797 USP19O94966 1318 aa15.87■□□□□ 0.13
TRAPPC4-204ENST00000524797 ABTB2Q8N961 1025 aa15.87■□□□□ 0.13
TRAPPC4-204ENST00000524797 BTG4Q9NY30 223 aa15.87■□□□□ 0.13
TRAPPC4-204ENST00000524797 MON2Q7Z3U7 1717 aa15.87■□□□□ 0.13
TRAPPC4-204ENST00000524797 SSH2Q76I76 1423 aa15.86■□□□□ 0.13
TRAPPC4-204ENST00000524797 KIAA0232Q92628 1395 aa15.86■□□□□ 0.13
TRAPPC4-204ENST00000524797 PRDM11Q9NQV5 511 aa15.86■□□□□ 0.13
TRAPPC4-204ENST00000524797 CCDC9Q9Y3X0 531 aaKnown RBP15.85■□□□□ 0.13
TRAPPC4-204ENST00000524797 LMO7Q8WWI1 1683 aa15.85■□□□□ 0.13
TRAPPC4-204ENST00000524797 SLIT3O75094 1523 aa15.84■□□□□ 0.13
TRAPPC4-204ENST00000524797 ZC3H6P61129 1189 aaKnown RBP15.84■□□□□ 0.13
TRAPPC4-204ENST00000524797 CHRNA2Q15822 529 aa15.83■□□□□ 0.12
TRAPPC4-204ENST00000524797 NLRP13Q86W25 1043 aa15.83■□□□□ 0.12
TRAPPC4-204ENST00000524797 CPSF1Q10570 1443 aaKnown RBP15.82■□□□□ 0.12
TRAPPC4-204ENST00000524797 CPDO75976 1380 aa15.82■□□□□ 0.12
TRAPPC4-204ENST00000524797 ONECUT3O60422 494 aaPredicted RBP15.82■□□□□ 0.12
TRAPPC4-204ENST00000524797 SEPT12Q8IYM1 358 aa15.82■□□□□ 0.12
TRAPPC4-204ENST00000524797 THSD7AQ9UPZ6 1657 aa15.81■□□□□ 0.12
TRAPPC4-204ENST00000524797 ZNF692Q9BU19 519 aaPredicted RBP15.81■□□□□ 0.12
TRAPPC4-204ENST00000524797 PCGF6Q9BYE7 350 aa15.81■□□□□ 0.12
TRAPPC4-204ENST00000524797 SPATA31A5Q5VU36 1347 aa15.81■□□□□ 0.12
TRAPPC4-204ENST00000524797 SPATA31A7Q8IWB4 1347 aa15.81■□□□□ 0.12
TRAPPC4-204ENST00000524797 USP54Q70EL1 1684 aa15.8■□□□□ 0.12
TRAPPC4-204ENST00000524797 CAMTA1Q9Y6Y1 1673 aa15.8■□□□□ 0.12
TRAPPC4-204ENST00000524797 TTC21BQ7Z4L5 1316 aa15.8■□□□□ 0.12
TRAPPC4-204ENST00000524797 CLSPNQ9HAW4 1339 aa15.8■□□□□ 0.12
TRAPPC4-204ENST00000524797 COL18A1P39060 1754 aa15.79■□□□□ 0.12
TRAPPC4-204ENST00000524797 CD163L1Q9NR16 1453 aa15.79■□□□□ 0.12
TRAPPC4-204ENST00000524797 KTN1Q86UP2 1357 aaKnown RBP15.79■□□□□ 0.12
TRAPPC4-204ENST00000524797 GCP02774 474 aa15.79■□□□□ 0.12
TRAPPC4-204ENST00000524797 NLRP6P59044 892 aa15.79■□□□□ 0.12
TRAPPC4-204ENST00000524797 TTC21AQ8NDW8 1320 aa15.78■□□□□ 0.12
TRAPPC4-204ENST00000524797 FAM98CQ17RN3 349 aaKnown RBP15.78■□□□□ 0.12
TRAPPC4-204ENST00000524797 TESK2Q96S53 571 aa15.78■□□□□ 0.12
TRAPPC4-204ENST00000524797 ST20-MTHFSA0A0A6YYL1 179 aa15.77■□□□□ 0.12
TRAPPC4-204ENST00000524797 PUS7Q96PZ0 661 aaKnown RBP15.77■□□□□ 0.12
TRAPPC4-204ENST00000524797 STRN4Q9NRL3 753 aa15.77■□□□□ 0.12
TRAPPC4-204ENST00000524797 RGPD5Q99666 1765 aa15.77■□□□□ 0.11
TRAPPC4-204ENST00000524797 SPATA31A1Q5TZJ5 1347 aa15.76■□□□□ 0.11
TRAPPC4-204ENST00000524797 KRT27Q7Z3Y8 459 aa15.76■□□□□ 0.11
TRAPPC4-204ENST00000524797 TIMELESSQ9UNS1 1208 aa15.76■□□□□ 0.11
TRAPPC4-204ENST00000524797 A0A0G2JS52 829 aa15.75■□□□□ 0.11
TRAPPC4-204ENST00000524797 MYT1Q01538 1121 aa15.75■□□□□ 0.11
TRAPPC4-204ENST00000524797 TMC1Q8TDI8 760 aa15.75■□□□□ 0.11
TRAPPC4-204ENST00000524797 USP47Q96K76 1375 aa15.75■□□□□ 0.11
TRAPPC4-204ENST00000524797 COL5A2P05997 1499 aaPredicted RBP15.74■□□□□ 0.11
TRAPPC4-204ENST00000524797 EVA1CP58658 441 aa15.74■□□□□ 0.11
TRAPPC4-204ENST00000524797 CCDC125Q86Z20 511 aa15.74■□□□□ 0.11
TRAPPC4-204ENST00000524797 NFAT5O94916 1531 aa15.74■□□□□ 0.11
TRAPPC4-204ENST00000524797 SLC12A5Q9H2X9 1139 aa15.74■□□□□ 0.11
TRAPPC4-204ENST00000524797 AATKQ6ZMQ8 1374 aa15.74■□□□□ 0.11
TRAPPC4-204ENST00000524797 BLMP54132 1417 aaPredicted RBP15.73■□□□□ 0.11
TRAPPC4-204ENST00000524797 ZBTB7CA1YPR0 619 aa15.73■□□□□ 0.11
TRAPPC4-204ENST00000524797 HDGFL2Q7Z4V5 671 aaPredicted RBP15.73■□□□□ 0.11
TRAPPC4-204ENST00000524797 WNK3Q9BYP7 1800 aa15.73■□□□□ 0.11
TRAPPC4-204ENST00000524797 LARP1Q6PKG0 1096 aaKnown RBP15.72■□□□□ 0.11
TRAPPC4-204ENST00000524797 USP31Q70CQ4 1352 aa15.72■□□□□ 0.11
TRAPPC4-204ENST00000524797 EDC4Q6P2E9 1401 aaKnown RBP15.72■□□□□ 0.11
TRAPPC4-204ENST00000524797 SLC24A1O60721 1099 aa15.72■□□□□ 0.11
TRAPPC4-204ENST00000524797 A0A1W2PP64 1363 aa15.72■□□□□ 0.11
TRAPPC4-204ENST00000524797 RGPD1P0DJD0 1748 aa15.71■□□□□ 0.11
TRAPPC4-204ENST00000524797 LTN1O94822 1766 aa15.71■□□□□ 0.11
TRAPPC4-204ENST00000524797 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.71■□□□□ 0.11
TRAPPC4-204ENST00000524797 KCNH5Q8NCM2 988 aa15.71■□□□□ 0.11
TRAPPC4-204ENST00000524797 ZRANB1Q9UGI0 708 aa15.71■□□□□ 0.11
TRAPPC4-204ENST00000524797 NINLQ9Y2I6 1382 aa15.71■□□□□ 0.11
TRAPPC4-204ENST00000524797 PARP4Q9UKK3 1724 aaKnown RBP15.7■□□□□ 0.1
TRAPPC4-204ENST00000524797 TERF2IPQ9NYB0 399 aa15.7■□□□□ 0.1
TRAPPC4-204ENST00000524797 BARGINQ6ZT62 677 aa15.7■□□□□ 0.1
TRAPPC4-204ENST00000524797 ARHGEF25Q86VW2 580 aa15.7■□□□□ 0.1
TRAPPC4-204ENST00000524797 NME9Q86XW9 330 aa15.7■□□□□ 0.1
TRAPPC4-204ENST00000524797 ABCC6O95255 1503 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms