RNA–Protein interactions for RNA: ENST00000522556.1

CLK4-211, Transcript of CDC like kinase 4, humanhuman

TSL 1 (best)

Gene CLK4, Length 1,249 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK4-211ENST00000522556 TIMELESSQ9UNS1 1208 aa25.31■■□□□ 1.64
CLK4-211ENST00000522556 PHRF1Q9P1Y6 1649 aaKnown RBP25.3■■□□□ 1.64
CLK4-211ENST00000522556 NGLY1Q96IV0 654 aa25.3■■□□□ 1.64
CLK4-211ENST00000522556 PLCH1Q4KWH8 1693 aa25.29■■□□□ 1.64
CLK4-211ENST00000522556 NUTM2GQ5VZR2 741 aa25.28■■□□□ 1.64
CLK4-211ENST00000522556 USP6P35125 1406 aa25.28■■□□□ 1.64
CLK4-211ENST00000522556 NRKQ7Z2Y5 1582 aa25.27■■□□□ 1.64
CLK4-211ENST00000522556 ZNF772Q68DY9 489 aaPredicted RBP25.27■■□□□ 1.64
CLK4-211ENST00000522556 ATAD2Q6PL18 1390 aa25.26■■□□□ 1.63
CLK4-211ENST00000522556 BCL9LQ86UU0 1499 aa25.26■■□□□ 1.63
CLK4-211ENST00000522556 MON2Q7Z3U7 1717 aa25.25■■□□□ 1.63
CLK4-211ENST00000522556 PIK3C2AO00443 1686 aa25.24■■□□□ 1.63
CLK4-211ENST00000522556 CD163L1Q9NR16 1453 aa25.24■■□□□ 1.63
CLK4-211ENST00000522556 HAP1P54257 671 aaPredicted RBP25.24■■□□□ 1.63
CLK4-211ENST00000522556 FNBP4Q8N3X1 1017 aaPredicted RBP25.24■■□□□ 1.63
CLK4-211ENST00000522556 SLIT2O94813 1529 aa25.23■■□□□ 1.63
CLK4-211ENST00000522556 SSH2Q76I76 1423 aa25.23■■□□□ 1.63
CLK4-211ENST00000522556 SOCS7O14512 581 aa25.23■■□□□ 1.63
CLK4-211ENST00000522556 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.23■■□□□ 1.63
CLK4-211ENST00000522556 USP21Q9UK80 565 aa25.22■■□□□ 1.63
CLK4-211ENST00000522556 CPSF1Q10570 1443 aaKnown RBP25.21■■□□□ 1.63
CLK4-211ENST00000522556 ATRNO75882 1429 aa25.2■■□□□ 1.63
CLK4-211ENST00000522556 NRAPQ86VF7 1730 aa25.2■■□□□ 1.62
CLK4-211ENST00000522556 QTRT2Q9H974 415 aaKnown RBP25.19■■□□□ 1.62
CLK4-211ENST00000522556 NWD2Q9ULI1 1742 aa25.18■■□□□ 1.62
CLK4-211ENST00000522556 ABTB2Q8N961 1025 aa25.17■■□□□ 1.62
CLK4-211ENST00000522556 SLC12A5Q9H2X9 1139 aa25.17■■□□□ 1.62
CLK4-211ENST00000522556 COL14A1Q05707 1796 aaKnown RBP25.17■■□□□ 1.62
CLK4-211ENST00000522556 FAM83GA6ND36 823 aa25.16■■□□□ 1.62
CLK4-211ENST00000522556 RGS12O14924 1447 aa25.16■■□□□ 1.62
CLK4-211ENST00000522556 USP19O94966 1318 aa25.15■■□□□ 1.62
CLK4-211ENST00000522556 RXRBP28702 533 aa25.15■■□□□ 1.62
CLK4-211ENST00000522556 TMC1Q8TDI8 760 aa25.15■■□□□ 1.62
CLK4-211ENST00000522556 GLI3P10071 1580 aa25.14■■□□□ 1.62
CLK4-211ENST00000522556 KTN1Q86UP2 1357 aaKnown RBP25.14■■□□□ 1.61
CLK4-211ENST00000522556 TTC21BQ7Z4L5 1316 aa25.13■■□□□ 1.61
CLK4-211ENST00000522556 A0A1W2PP64 1363 aa25.13■■□□□ 1.61
CLK4-211ENST00000522556 KIAA0232Q92628 1395 aa25.13■■□□□ 1.61
CLK4-211ENST00000522556 SLIT3O75094 1523 aa25.12■■□□□ 1.61
CLK4-211ENST00000522556 BRD4O60885 1362 aaPredicted RBP25.12■■□□□ 1.61
CLK4-211ENST00000522556 MYOM1P52179 1685 aa25.12■■□□□ 1.61
CLK4-211ENST00000522556 UNC5CLQ8IV45 518 aa25.11■■□□□ 1.61
CLK4-211ENST00000522556 TRPC5Q9UL62 973 aaPredicted RBP25.11■■□□□ 1.61
CLK4-211ENST00000522556 CDK12Q9NYV4 1490 aaPredicted RBP25.1■■□□□ 1.61
CLK4-211ENST00000522556 ZC3H6P61129 1189 aaKnown RBP25.1■■□□□ 1.61
CLK4-211ENST00000522556 RBM6P78332 1123 aaKnown RBP25.1■■□□□ 1.61
CLK4-211ENST00000522556 CHRNA2Q15822 529 aa25.1■■□□□ 1.61
CLK4-211ENST00000522556 ZRANB1Q9UGI0 708 aa25.09■■□□□ 1.61
CLK4-211ENST00000522556 PUS7Q96PZ0 661 aaKnown RBP25.08■■□□□ 1.61
CLK4-211ENST00000522556 PRDM11Q9NQV5 511 aa25.08■■□□□ 1.61
CLK4-211ENST00000522556 LMO7Q8WWI1 1683 aa25.07■■□□□ 1.6
CLK4-211ENST00000522556 NLRP6P59044 892 aa25.07■■□□□ 1.6
CLK4-211ENST00000522556 TMF1P82094 1093 aa25.07■■□□□ 1.6
CLK4-211ENST00000522556 NLRP13Q86W25 1043 aa25.07■■□□□ 1.6
CLK4-211ENST00000522556 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.07■■□□□ 1.6
CLK4-211ENST00000522556 ZNF692Q9BU19 519 aaPredicted RBP25.07■■□□□ 1.6
CLK4-211ENST00000522556 BTG4Q9NY30 223 aa25.07■■□□□ 1.6
CLK4-211ENST00000522556 HSPA5P11021 654 aaKnown RBP25.06■■□□□ 1.6
CLK4-211ENST00000522556 USP54Q70EL1 1684 aa25.06■■□□□ 1.6
CLK4-211ENST00000522556 NME9Q86XW9 330 aa25.05■■□□□ 1.6
CLK4-211ENST00000522556 GCP02774 474 aa25.04■■□□□ 1.6
CLK4-211ENST00000522556 GJD4Q96KN9 370 aaPredicted RBP25.04■■□□□ 1.6
CLK4-211ENST00000522556 TTC21AQ8NDW8 1320 aa25.04■■□□□ 1.6
CLK4-211ENST00000522556 CAMTA1Q9Y6Y1 1673 aa25.04■■□□□ 1.6
CLK4-211ENST00000522556 EDC4Q6P2E9 1401 aaKnown RBP25.03■■□□□ 1.6
CLK4-211ENST00000522556 CPDO75976 1380 aa25.03■■□□□ 1.6
CLK4-211ENST00000522556 NFAT5O94916 1531 aa25.02■■□□□ 1.6
CLK4-211ENST00000522556 HDGFL2Q7Z4V5 671 aaPredicted RBP25.02■■□□□ 1.6
CLK4-211ENST00000522556 COL18A1P39060 1754 aa25.01■■□□□ 1.59
CLK4-211ENST00000522556 VPS72Q15906 364 aa25.01■■□□□ 1.59
CLK4-211ENST00000522556 NINLQ9Y2I6 1382 aa25.01■■□□□ 1.59
CLK4-211ENST00000522556 BRWD3Q6RI45 1802 aa25■■□□□ 1.59
CLK4-211ENST00000522556 SOX12O15370 315 aa25■■□□□ 1.59
CLK4-211ENST00000522556 TERF2IPQ9NYB0 399 aa25■■□□□ 1.59
CLK4-211ENST00000522556 ZBTB7CA1YPR0 619 aa24.99■■□□□ 1.59
CLK4-211ENST00000522556 EIF4G2P78344 907 aaKnown RBP eCLIP24.99■■□□□ 1.59
CLK4-211ENST00000522556 ANKRD36BQ8N2N9 1353 aa24.99■■□□□ 1.59
CLK4-211ENST00000522556 RGPD5Q99666 1765 aa24.98■■□□□ 1.59
CLK4-211ENST00000522556 CCDC9Q9Y3X0 531 aaKnown RBP24.98■■□□□ 1.59
CLK4-211ENST00000522556 USP31Q70CQ4 1352 aa24.97■■□□□ 1.59
CLK4-211ENST00000522556 SLC24A1O60721 1099 aa24.97■■□□□ 1.59
CLK4-211ENST00000522556 OVOS2A0A0J9YW53 1432 aa24.96■■□□□ 1.59
CLK4-211ENST00000522556 OVOS2Q6IE36 1432 aa24.96■■□□□ 1.59
CLK4-211ENST00000522556 STRN4Q9NRL3 753 aa24.96■■□□□ 1.59
CLK4-211ENST00000522556 LTN1O94822 1766 aa24.95■■□□□ 1.58
CLK4-211ENST00000522556 COL5A2P05997 1499 aaPredicted RBP24.94■■□□□ 1.58
CLK4-211ENST00000522556 C11orf95C9JLR9 678 aaPredicted RBP24.93■■□□□ 1.58
CLK4-211ENST00000522556 POLR3GLQ9BT43 218 aa24.93■■□□□ 1.58
CLK4-211ENST00000522556 KIF20BQ96Q89 1820 aa24.93■■□□□ 1.58
CLK4-211ENST00000522556 SPATA31A5Q5VU36 1347 aa24.92■■□□□ 1.58
CLK4-211ENST00000522556 SPATA31A7Q8IWB4 1347 aa24.92■■□□□ 1.58
CLK4-211ENST00000522556 THSD7AQ9UPZ6 1657 aa24.91■■□□□ 1.58
CLK4-211ENST00000522556 CDCA8Q53HL2 280 aa24.91■■□□□ 1.58
CLK4-211ENST00000522556 LARP1Q6PKG0 1096 aaKnown RBP24.9■■□□□ 1.58
CLK4-211ENST00000522556 ARHGEF25Q86VW2 580 aa24.9■■□□□ 1.58
CLK4-211ENST00000522556 AXIN2Q9Y2T1 843 aa24.9■■□□□ 1.58
CLK4-211ENST00000522556 AATKQ6ZMQ8 1374 aa24.9■■□□□ 1.58
CLK4-211ENST00000522556 FAM98CQ17RN3 349 aaKnown RBP24.89■■□□□ 1.58
CLK4-211ENST00000522556 CARD14Q9BXL6 1004 aa24.89■■□□□ 1.58
CLK4-211ENST00000522556 SEPT12Q8IYM1 358 aa24.88■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms