RNA–Protein interactions for RNA: ENST00000521401.1

HOXA3-204, Transcript of homeobox A3, humanhuman

TSL 3

Gene HOXA3, Length 598 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3-204ENST00000521401 UPF1Q92900 1129 aaKnown RBP eCLIP30.81■■■□□ 2.52
HOXA3-204ENST00000521401 ABCA3Q99758 1704 aa30.81■■■□□ 2.52
HOXA3-204ENST00000521401 QRICH2Q9H0J4 1663 aa30.81■■■□□ 2.52
HOXA3-204ENST00000521401 FAM83GA6ND36 823 aa30.8■■■□□ 2.52
HOXA3-204ENST00000521401 GJD4Q96KN9 370 aaPredicted RBP30.8■■■□□ 2.52
HOXA3-204ENST00000521401 PPIP5K1Q6PFW1 1433 aa30.78■■■□□ 2.52
HOXA3-204ENST00000521401 EVC2Q86UK5 1308 aa30.75■■■□□ 2.51
HOXA3-204ENST00000521401 TNKS1BP1Q9C0C2 1729 aaKnown RBP30.74■■■□□ 2.51
HOXA3-204ENST00000521401 CARD11Q9BXL7 1154 aa30.74■■■□□ 2.51
HOXA3-204ENST00000521401 CABP1Q9NZU7 370 aa30.74■■■□□ 2.51
HOXA3-204ENST00000521401 RALGAPBQ86X10 1494 aa30.74■■■□□ 2.51
HOXA3-204ENST00000521401 VPS72Q15906 364 aa30.72■■■□□ 2.51
HOXA3-204ENST00000521401 CRYBG1Q9Y4K1 1723 aa30.7■■■□□ 2.51
HOXA3-204ENST00000521401 NUTM2GQ5VZR2 741 aa30.7■■■□□ 2.51
HOXA3-204ENST00000521401 GLI3P10071 1580 aa30.7■■■□□ 2.5
HOXA3-204ENST00000521401 PLCH1Q4KWH8 1693 aa30.67■■■□□ 2.5
HOXA3-204ENST00000521401 SBNO2Q9Y2G9 1366 aa30.66■■■□□ 2.5
HOXA3-204ENST00000521401 ABTB2Q8N961 1025 aa30.66■■■□□ 2.5
HOXA3-204ENST00000521401 BTG4Q9NY30 223 aa30.66■■■□□ 2.5
HOXA3-204ENST00000521401 NWD2Q9ULI1 1742 aa30.66■■■□□ 2.5
HOXA3-204ENST00000521401 BRD4O60885 1362 aaPredicted RBP30.65■■■□□ 2.5
HOXA3-204ENST00000521401 USP6P35125 1406 aa30.64■■■□□ 2.49
HOXA3-204ENST00000521401 KIAA0232Q92628 1395 aa30.63■■■□□ 2.49
HOXA3-204ENST00000521401 SSH2Q76I76 1423 aa30.63■■■□□ 2.49
HOXA3-204ENST00000521401 PRDM11Q9NQV5 511 aa30.62■■■□□ 2.49
HOXA3-204ENST00000521401 USP19O94966 1318 aa30.62■■■□□ 2.49
HOXA3-204ENST00000521401 COL14A1Q05707 1796 aaKnown RBP30.61■■■□□ 2.49
HOXA3-204ENST00000521401 ONECUT3O60422 494 aaPredicted RBP30.61■■■□□ 2.49
HOXA3-204ENST00000521401 ATAD2Q6PL18 1390 aa30.61■■■□□ 2.49
HOXA3-204ENST00000521401 CCDC9Q9Y3X0 531 aaKnown RBP30.6■■■□□ 2.49
HOXA3-204ENST00000521401 NRAPQ86VF7 1730 aa30.59■■■□□ 2.49
HOXA3-204ENST00000521401 PHRF1Q9P1Y6 1649 aaKnown RBP30.59■■■□□ 2.49
HOXA3-204ENST00000521401 ZC3H6P61129 1189 aaKnown RBP30.59■■■□□ 2.49
HOXA3-204ENST00000521401 CHRNA2Q15822 529 aa30.58■■■□□ 2.49
HOXA3-204ENST00000521401 NLRP13Q86W25 1043 aa30.58■■■□□ 2.49
HOXA3-204ENST00000521401 SEPT12Q8IYM1 358 aa30.57■■■□□ 2.48
HOXA3-204ENST00000521401 PCGF6Q9BYE7 350 aa30.56■■■□□ 2.48
HOXA3-204ENST00000521401 ZNF692Q9BU19 519 aaPredicted RBP30.55■■■□□ 2.48
HOXA3-204ENST00000521401 NRKQ7Z2Y5 1582 aa30.54■■■□□ 2.48
HOXA3-204ENST00000521401 GCP02774 474 aa30.54■■■□□ 2.48
HOXA3-204ENST00000521401 CPSF1Q10570 1443 aaKnown RBP30.54■■■□□ 2.48
HOXA3-204ENST00000521401 CPDO75976 1380 aa30.53■■■□□ 2.48
HOXA3-204ENST00000521401 SPATA31A5Q5VU36 1347 aa30.52■■■□□ 2.48
HOXA3-204ENST00000521401 SPATA31A7Q8IWB4 1347 aa30.52■■■□□ 2.48
HOXA3-204ENST00000521401 TTC21BQ7Z4L5 1316 aa30.51■■■□□ 2.48
HOXA3-204ENST00000521401 NLRP6P59044 892 aa30.51■■■□□ 2.47
HOXA3-204ENST00000521401 TESK2Q96S53 571 aa30.51■■■□□ 2.47
HOXA3-204ENST00000521401 CLSPNQ9HAW4 1339 aa30.5■■■□□ 2.47
HOXA3-204ENST00000521401 ST20-MTHFSA0A0A6YYL1 179 aa30.49■■■□□ 2.47
HOXA3-204ENST00000521401 FAM98CQ17RN3 349 aaKnown RBP30.49■■■□□ 2.47
HOXA3-204ENST00000521401 PUS7Q96PZ0 661 aaKnown RBP30.46■■■□□ 2.47
HOXA3-204ENST00000521401 STRN4Q9NRL3 753 aa30.46■■■□□ 2.47
HOXA3-204ENST00000521401 SLIT3O75094 1523 aa30.46■■■□□ 2.47
HOXA3-204ENST00000521401 CD163L1Q9NR16 1453 aa30.45■■■□□ 2.47
HOXA3-204ENST00000521401 KTN1Q86UP2 1357 aaKnown RBP30.45■■■□□ 2.47
HOXA3-204ENST00000521401 TIMELESSQ9UNS1 1208 aa30.45■■■□□ 2.47
HOXA3-204ENST00000521401 PIK3C2AO00443 1686 aa30.45■■■□□ 2.46
HOXA3-204ENST00000521401 CAMTA1Q9Y6Y1 1673 aa30.45■■■□□ 2.46
HOXA3-204ENST00000521401 SPATA31A1Q5TZJ5 1347 aa30.45■■■□□ 2.46
HOXA3-204ENST00000521401 TTC21AQ8NDW8 1320 aa30.45■■■□□ 2.46
HOXA3-204ENST00000521401 SLC12A5Q9H2X9 1139 aa30.44■■■□□ 2.46
HOXA3-204ENST00000521401 EP400Q96L91 3159 aa30.44■■■□□ 2.46
HOXA3-204ENST00000521401 AKAP12Q02952 1782 aa30.43■■■□□ 2.46
HOXA3-204ENST00000521401 KRT27Q7Z3Y8 459 aa30.43■■■□□ 2.46
HOXA3-204ENST00000521401 TMC1Q8TDI8 760 aa30.42■■■□□ 2.46
HOXA3-204ENST00000521401 LMO7Q8WWI1 1683 aa30.42■■■□□ 2.46
HOXA3-204ENST00000521401 BRWD3Q6RI45 1802 aa30.4■■■□□ 2.46
HOXA3-204ENST00000521401 CCDC125Q86Z20 511 aa30.4■■■□□ 2.46
HOXA3-204ENST00000521401 A0A0G2JS52 829 aa30.39■■■□□ 2.46
HOXA3-204ENST00000521401 EVA1CP58658 441 aa30.39■■■□□ 2.46
HOXA3-204ENST00000521401 MYT1Q01538 1121 aa30.39■■■□□ 2.46
HOXA3-204ENST00000521401 LARP1Q6PKG0 1096 aaKnown RBP30.38■■■□□ 2.45
HOXA3-204ENST00000521401 USP47Q96K76 1375 aa30.38■■■□□ 2.45
HOXA3-204ENST00000521401 AATKQ6ZMQ8 1374 aa30.37■■■□□ 2.45
HOXA3-204ENST00000521401 ZRANB1Q9UGI0 708 aa30.36■■■□□ 2.45
HOXA3-204ENST00000521401 SLC24A1O60721 1099 aa30.35■■■□□ 2.45
HOXA3-204ENST00000521401 HDGFL2Q7Z4V5 671 aaPredicted RBP30.35■■■□□ 2.45
HOXA3-204ENST00000521401 SUGP2Q8IX01 1082 aaKnown RBP eCLIP30.35■■■□□ 2.45
HOXA3-204ENST00000521401 THSD7AQ9UPZ6 1657 aa30.35■■■□□ 2.45
HOXA3-204ENST00000521401 MON2Q7Z3U7 1717 aa30.35■■■□□ 2.45
HOXA3-204ENST00000521401 COL5A2P05997 1499 aaPredicted RBP30.34■■■□□ 2.45
HOXA3-204ENST00000521401 USP31Q70CQ4 1352 aa30.34■■■□□ 2.45
HOXA3-204ENST00000521401 ARHGEF25Q86VW2 580 aa30.34■■■□□ 2.45
HOXA3-204ENST00000521401 BLMP54132 1417 aaPredicted RBP30.33■■■□□ 2.45
HOXA3-204ENST00000521401 A0A1W2PP64 1363 aa30.33■■■□□ 2.45
HOXA3-204ENST00000521401 ZBTB7CA1YPR0 619 aa30.33■■■□□ 2.45
HOXA3-204ENST00000521401 BARGINQ6ZT62 677 aa30.33■■■□□ 2.45
HOXA3-204ENST00000521401 KCNH5Q8NCM2 988 aa30.33■■■□□ 2.45
HOXA3-204ENST00000521401 USP35Q9P2H5 1018 aa30.33■■■□□ 2.45
HOXA3-204ENST00000521401 NME9Q86XW9 330 aa30.32■■■□□ 2.44
HOXA3-204ENST00000521401 TERF2IPQ9NYB0 399 aa30.31■■■□□ 2.44
HOXA3-204ENST00000521401 AXIN2Q9Y2T1 843 aa30.31■■■□□ 2.44
HOXA3-204ENST00000521401 SOX12O15370 315 aa30.3■■■□□ 2.44
HOXA3-204ENST00000521401 EDC4Q6P2E9 1401 aaKnown RBP30.3■■■□□ 2.44
HOXA3-204ENST00000521401 NINLQ9Y2I6 1382 aa30.29■■■□□ 2.44
HOXA3-204ENST00000521401 TCP11L2Q8N4U5 519 aa30.29■■■□□ 2.44
HOXA3-204ENST00000521401 NFAT5O94916 1531 aa30.28■■■□□ 2.44
HOXA3-204ENST00000521401 FAM182BQ5T319 152 aa30.28■■■□□ 2.44
HOXA3-204ENST00000521401 COL18A1P39060 1754 aa30.28■■■□□ 2.44
HOXA3-204ENST00000521401 TMF1P82094 1093 aa30.27■■■□□ 2.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms