RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 XPCQ01831 940 aaPredicted RBP14.25□□□□□ -0.13
SYNPO-204ENST00000519664 MPNDQ8N594 471 aa14.25□□□□□ -0.13
SYNPO-204ENST00000519664 NUDT16Q96DE0 195 aaKnown RBP14.25□□□□□ -0.13
SYNPO-204ENST00000519664 HDGFL1Q5TGJ6 251 aa14.25□□□□□ -0.13
SYNPO-204ENST00000519664 RIC3Q7Z5B4 369 aa14.25□□□□□ -0.13
SYNPO-204ENST00000519664 CCDC61Q9Y6R9 512 aa14.25□□□□□ -0.13
SYNPO-204ENST00000519664 NUCB2P80303 420 aa14.24□□□□□ -0.13
SYNPO-204ENST00000519664 IL1RAPL2Q9NP60 686 aa14.24□□□□□ -0.13
SYNPO-204ENST00000519664 HTATSF1O43719 755 aaKnown RBP14.24□□□□□ -0.13
SYNPO-204ENST00000519664 PRPF40AO75400 957 aaKnown RBP14.24□□□□□ -0.13
SYNPO-204ENST00000519664 RAPGEF4Q8WZA2 1011 aa14.24□□□□□ -0.13
SYNPO-204ENST00000519664 GCC1Q96CN9 775 aa14.24□□□□□ -0.13
SYNPO-204ENST00000519664 TRIM27P14373 513 aa14.24□□□□□ -0.13
SYNPO-204ENST00000519664 RUFY2Q8WXA3 655 aa14.24□□□□□ -0.13
SYNPO-204ENST00000519664 NEUROD6Q96NK8 337 aa14.24□□□□□ -0.13
SYNPO-204ENST00000519664 EXOC6BQ9Y2D4 811 aa14.24□□□□□ -0.13
SYNPO-204ENST00000519664 ATP10BO94823 1461 aa14.24□□□□□ -0.13
SYNPO-204ENST00000519664 CCDC27Q2M243 656 aa14.24□□□□□ -0.13
SYNPO-204ENST00000519664 CREBRFQ8IUR6 639 aa14.24□□□□□ -0.13
SYNPO-204ENST00000519664 NFE2L2Q16236 605 aa14.23□□□□□ -0.13
SYNPO-204ENST00000519664 A0A0U1RQG5 324 aaPredicted RBP14.23□□□□□ -0.13
SYNPO-204ENST00000519664 EVA1CP58658 441 aa14.23□□□□□ -0.13
SYNPO-204ENST00000519664 CCDC30Q5VVM6 783 aa14.23□□□□□ -0.13
SYNPO-204ENST00000519664 FBXW7Q969H0 707 aa14.23□□□□□ -0.13
SYNPO-204ENST00000519664 SMC3Q9UQE7 1217 aa14.23□□□□□ -0.13
SYNPO-204ENST00000519664 SMARCA5O60264 1052 aaPredicted RBP14.22□□□□□ -0.13
SYNPO-204ENST00000519664 PHF14O94880 888 aa14.22□□□□□ -0.13
SYNPO-204ENST00000519664 GNAI3P08754 354 aa14.22□□□□□ -0.13
SYNPO-204ENST00000519664 GTF2E1P29083 439 aaPredicted RBP14.22□□□□□ -0.13
SYNPO-204ENST00000519664 FAM83GA6ND36 823 aa14.22□□□□□ -0.13
SYNPO-204ENST00000519664 NOS1P29475 1434 aa14.22□□□□□ -0.13
SYNPO-204ENST00000519664 DDX58O95786 925 aaKnown RBP14.21□□□□□ -0.13
SYNPO-204ENST00000519664 GNAI2P04899 355 aa14.21□□□□□ -0.13
SYNPO-204ENST00000519664 GAS2L2Q8NHY3 880 aa14.21□□□□□ -0.13
SYNPO-204ENST00000519664 BCL11BQ9C0K0 894 aaPredicted RBP14.21□□□□□ -0.13
SYNPO-204ENST00000519664 PCDHB15Q9Y5E8 787 aa14.21□□□□□ -0.13
SYNPO-204ENST00000519664 RPGRIP1LQ68CZ1 1315 aa14.21□□□□□ -0.13
SYNPO-204ENST00000519664 F6X3S4 739 aa14.21□□□□□ -0.13
SYNPO-204ENST00000519664 PER1O15534 1290 aaPredicted RBP14.21□□□□□ -0.13
SYNPO-204ENST00000519664 CLASRPQ8N2M8 674 aaKnown RBP14.21□□□□□ -0.13
SYNPO-204ENST00000519664 SPINK5Q9NQ38 1064 aaPredicted RBP14.21□□□□□ -0.13
SYNPO-204ENST00000519664 ATP6V1DQ9Y5K8 247 aa14.21□□□□□ -0.13
SYNPO-204ENST00000519664 CSPP1Q1MSJ5 1256 aa14.21□□□□□ -0.14
SYNPO-204ENST00000519664 NKTRP30414 1462 aaKnown RBP14.21□□□□□ -0.14
SYNPO-204ENST00000519664 LRPPRCP42704 1394 aaKnown RBP14.2□□□□□ -0.14
SYNPO-204ENST00000519664 GPRASP1Q5JY77 1395 aa14.2□□□□□ -0.14
SYNPO-204ENST00000519664 KIF14Q15058 1648 aa14.2□□□□□ -0.14
SYNPO-204ENST00000519664 RRP9O43818 475 aaKnown RBP14.2□□□□□ -0.14
SYNPO-204ENST00000519664 APPP05067 770 aa14.2□□□□□ -0.14
SYNPO-204ENST00000519664 ZNF692Q9BU19 519 aaPredicted RBP14.2□□□□□ -0.14
SYNPO-204ENST00000519664 SIL1Q9H173 461 aa14.2□□□□□ -0.14
SYNPO-204ENST00000519664 NASPP49321 788 aaPredicted RBP14.2□□□□□ -0.14
SYNPO-204ENST00000519664 ATAD2Q6PL18 1390 aa14.2□□□□□ -0.14
SYNPO-204ENST00000519664 MCM4P33991 863 aa14.19□□□□□ -0.14
SYNPO-204ENST00000519664 MRE11P49959 708 aa14.19□□□□□ -0.14
SYNPO-204ENST00000519664 CT47B1P0C2W7 299 aaPredicted RBP14.19□□□□□ -0.14
SYNPO-204ENST00000519664 ADGRL1O94910 1474 aa14.19□□□□□ -0.14
SYNPO-204ENST00000519664 BICD2Q8TD16 824 aa14.19□□□□□ -0.14
SYNPO-204ENST00000519664 CD109Q6YHK3 1445 aa14.18□□□□□ -0.14
SYNPO-204ENST00000519664 CARD14Q9BXL6 1004 aa14.18□□□□□ -0.14
SYNPO-204ENST00000519664 KDM4AO75164 1064 aa14.18□□□□□ -0.14
SYNPO-204ENST00000519664 CEBPAP49715 358 aaPredicted RBP14.18□□□□□ -0.14
SYNPO-204ENST00000519664 C14orf93Q9H972 538 aaKnown RBP14.18□□□□□ -0.14
SYNPO-204ENST00000519664 TBC1D2Q9BYX2 928 aa14.18□□□□□ -0.14
SYNPO-204ENST00000519664 DHX29Q7Z478 1369 aaKnown RBP14.17□□□□□ -0.14
SYNPO-204ENST00000519664 BECN2A8MW95 431 aa14.17□□□□□ -0.14
SYNPO-204ENST00000519664 USHBP1Q8N6Y0 703 aa14.17□□□□□ -0.14
SYNPO-204ENST00000519664 FAM13BQ9NYF5 915 aa14.17□□□□□ -0.14
SYNPO-204ENST00000519664 ERC2O15083 957 aa14.17□□□□□ -0.14
SYNPO-204ENST00000519664 RABEP1Q15276 862 aa14.17□□□□□ -0.14
SYNPO-204ENST00000519664 ZNF530Q6P9A1 599 aaPredicted RBP14.17□□□□□ -0.14
SYNPO-204ENST00000519664 SCAF11Q99590 1463 aaKnown RBP14.17□□□□□ -0.14
SYNPO-204ENST00000519664 PLEKHH1Q9ULM0 1364 aa14.17□□□□□ -0.14
SYNPO-204ENST00000519664 FSD1Q9BTV5 496 aa14.17□□□□□ -0.14
SYNPO-204ENST00000519664 K7ELQ4 463 aaPredicted RBP14.16□□□□□ -0.14
SYNPO-204ENST00000519664 FIBPO43427 364 aa14.16□□□□□ -0.14
SYNPO-204ENST00000519664 UPF3BQ9BZI7 483 aaKnown RBP14.16□□□□□ -0.14
SYNPO-204ENST00000519664 SRGAP3O43295 1099 aa14.16□□□□□ -0.14
SYNPO-204ENST00000519664 RLBP1P12271 317 aa14.16□□□□□ -0.14
SYNPO-204ENST00000519664 HSP90AB4PQ58FF6 505 aa14.16□□□□□ -0.14
SYNPO-204ENST00000519664 LRRCC1Q9C099 1032 aa14.16□□□□□ -0.14
SYNPO-204ENST00000519664 MYL6BP14649 208 aa14.15□□□□□ -0.14
SYNPO-204ENST00000519664 KIF3AQ9Y496 699 aa14.15□□□□□ -0.14
SYNPO-204ENST00000519664 PARD3Q8TEW0 1356 aa14.15□□□□□ -0.14
SYNPO-204ENST00000519664 GOLGA6L19H0YKK7 550 aa14.15□□□□□ -0.14
SYNPO-204ENST00000519664 PRAG1Q86YV5 1406 aa14.15□□□□□ -0.14
SYNPO-204ENST00000519664 FAM177BA6PVY3 158 aa14.15□□□□□ -0.14
SYNPO-204ENST00000519664 RNF20Q5VTR2 975 aa14.15□□□□□ -0.14
SYNPO-204ENST00000519664 DDX54Q8TDD1 881 aaKnown RBP14.15□□□□□ -0.14
SYNPO-204ENST00000519664 DNAJC2Q99543 621 aaKnown RBP14.15□□□□□ -0.14
SYNPO-204ENST00000519664 ZNF592Q92610 1267 aa14.14□□□□□ -0.15
SYNPO-204ENST00000519664 SRCIN1Q9C0H9 1055 aa14.14□□□□□ -0.15
SYNPO-204ENST00000519664 FYB1O15117 783 aa14.14□□□□□ -0.15
SYNPO-204ENST00000519664 NUTM1Q86Y26 1132 aa14.14□□□□□ -0.15
SYNPO-204ENST00000519664 CPLX1O14810 134 aa14.14□□□□□ -0.15
SYNPO-204ENST00000519664 ZC3H6P61129 1189 aaKnown RBP14.14□□□□□ -0.15
SYNPO-204ENST00000519664 CNTROBQ8N137 903 aa14.14□□□□□ -0.15
SYNPO-204ENST00000519664 RASSF8Q8NHQ8 419 aa14.14□□□□□ -0.15
SYNPO-204ENST00000519664 ATF3P18847 181 aa14.13□□□□□ -0.15
SYNPO-204ENST00000519664 WASHC4Q2M389 1173 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms