RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 RALGAPBQ86X10 1494 aa19.52■□□□□ 0.72
TCOF1-215ENST00000515516 PRDM11Q9NQV5 511 aa19.51■□□□□ 0.71
TCOF1-215ENST00000515516 POLR3AO14802 1390 aaPredicted RBP19.51■□□□□ 0.71
TCOF1-215ENST00000515516 EVC2Q86UK5 1308 aa19.51■□□□□ 0.71
TCOF1-215ENST00000515516 NUTM2GQ5VZR2 741 aa19.49■□□□□ 0.71
TCOF1-215ENST00000515516 ABTB2Q8N961 1025 aa19.49■□□□□ 0.71
TCOF1-215ENST00000515516 PPIP5K1Q6PFW1 1433 aa19.49■□□□□ 0.71
TCOF1-215ENST00000515516 TRPM3Q9HCF6 1732 aaPredicted RBP19.48■□□□□ 0.71
TCOF1-215ENST00000515516 A0A0G2JS52 829 aa19.48■□□□□ 0.71
TCOF1-215ENST00000515516 MYT1Q01538 1121 aa19.48■□□□□ 0.71
TCOF1-215ENST00000515516 CCDC125Q86Z20 511 aa19.48■□□□□ 0.71
TCOF1-215ENST00000515516 SEPT12Q8IYM1 358 aa19.48■□□□□ 0.71
TCOF1-215ENST00000515516 ITSN1Q15811 1721 aa19.48■□□□□ 0.71
TCOF1-215ENST00000515516 TONSLQ96HA7 1378 aa19.47■□□□□ 0.71
TCOF1-215ENST00000515516 CABP1Q9NZU7 370 aa19.47■□□□□ 0.71
TCOF1-215ENST00000515516 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.47■□□□□ 0.71
TCOF1-215ENST00000515516 ZC3H6P61129 1189 aaKnown RBP19.45■□□□□ 0.7
TCOF1-215ENST00000515516 NLRP13Q86W25 1043 aa19.45■□□□□ 0.7
TCOF1-215ENST00000515516 ALS2Q96Q42 1657 aa19.45■□□□□ 0.7
TCOF1-215ENST00000515516 ONECUT3O60422 494 aaPredicted RBP19.44■□□□□ 0.7
TCOF1-215ENST00000515516 CARD11Q9BXL7 1154 aa19.44■□□□□ 0.7
TCOF1-215ENST00000515516 BRD4O60885 1362 aaPredicted RBP19.44■□□□□ 0.7
TCOF1-215ENST00000515516 KIAA0232Q92628 1395 aa19.44■□□□□ 0.7
TCOF1-215ENST00000515516 FAM98CQ17RN3 349 aaKnown RBP19.43■□□□□ 0.7
TCOF1-215ENST00000515516 GLI3P10071 1580 aa19.43■□□□□ 0.7
TCOF1-215ENST00000515516 EVA1CP58658 441 aa19.42■□□□□ 0.7
TCOF1-215ENST00000515516 CHRNA2Q15822 529 aa19.42■□□□□ 0.7
TCOF1-215ENST00000515516 KRT27Q7Z3Y8 459 aa19.42■□□□□ 0.7
TCOF1-215ENST00000515516 ABCA3Q99758 1704 aa19.42■□□□□ 0.7
TCOF1-215ENST00000515516 NWD2Q9ULI1 1742 aa19.42■□□□□ 0.7
TCOF1-215ENST00000515516 TRPM1Q7Z4N2 1603 aa19.41■□□□□ 0.7
TCOF1-215ENST00000515516 SF3B2Q13435 895 aaKnown RBP19.41■□□□□ 0.7
TCOF1-215ENST00000515516 STRN4Q9NRL3 753 aa19.41■□□□□ 0.7
TCOF1-215ENST00000515516 PLCH1Q4KWH8 1693 aa19.4■□□□□ 0.7
TCOF1-215ENST00000515516 COL14A1Q05707 1796 aaKnown RBP19.4■□□□□ 0.7
TCOF1-215ENST00000515516 SPATA31A5Q5VU36 1347 aa19.4■□□□□ 0.7
TCOF1-215ENST00000515516 SPATA31A7Q8IWB4 1347 aa19.4■□□□□ 0.7
TCOF1-215ENST00000515516 TOPAZ1Q8N9V7 1692 aa19.4■□□□□ 0.7
TCOF1-215ENST00000515516 QRICH2Q9H0J4 1663 aa19.4■□□□□ 0.7
TCOF1-215ENST00000515516 NLRP6P59044 892 aa19.39■□□□□ 0.69
TCOF1-215ENST00000515516 ZNF692Q9BU19 519 aaPredicted RBP19.39■□□□□ 0.69
TCOF1-215ENST00000515516 GCP02774 474 aa19.38■□□□□ 0.69
TCOF1-215ENST00000515516 USP19O94966 1318 aa19.37■□□□□ 0.69
TCOF1-215ENST00000515516 USP6P35125 1406 aa19.36■□□□□ 0.69
TCOF1-215ENST00000515516 BLMP54132 1417 aaPredicted RBP19.35■□□□□ 0.69
TCOF1-215ENST00000515516 ZBTB7CA1YPR0 619 aa19.35■□□□□ 0.69
TCOF1-215ENST00000515516 ZRANB1Q9UGI0 708 aa19.35■□□□□ 0.69
TCOF1-215ENST00000515516 CPDO75976 1380 aa19.34■□□□□ 0.69
TCOF1-215ENST00000515516 SPATA31A1Q5TZJ5 1347 aa19.34■□□□□ 0.69
TCOF1-215ENST00000515516 USP35Q9P2H5 1018 aa19.33■□□□□ 0.68
TCOF1-215ENST00000515516 SBNO2Q9Y2G9 1366 aa19.32■□□□□ 0.68
TCOF1-215ENST00000515516 NRAPQ86VF7 1730 aa19.31■□□□□ 0.68
TCOF1-215ENST00000515516 TTC21BQ7Z4L5 1316 aa19.31■□□□□ 0.68
TCOF1-215ENST00000515516 TMC1Q8TDI8 760 aa19.31■□□□□ 0.68
TCOF1-215ENST00000515516 CRYBG1Q9Y4K1 1723 aa19.31■□□□□ 0.68
TCOF1-215ENST00000515516 TTC21AQ8NDW8 1320 aa19.3■□□□□ 0.68
TCOF1-215ENST00000515516 PHRF1Q9P1Y6 1649 aaKnown RBP19.3■□□□□ 0.68
TCOF1-215ENST00000515516 LARP1Q6PKG0 1096 aaKnown RBP19.3■□□□□ 0.68
TCOF1-215ENST00000515516 KTN1Q86UP2 1357 aaKnown RBP19.3■□□□□ 0.68
TCOF1-215ENST00000515516 SSH2Q76I76 1423 aa19.29■□□□□ 0.68
TCOF1-215ENST00000515516 KCNH5Q8NCM2 988 aa19.29■□□□□ 0.68
TCOF1-215ENST00000515516 SLC24A1O60721 1099 aa19.28■□□□□ 0.68
TCOF1-215ENST00000515516 BARGINQ6ZT62 677 aa19.28■□□□□ 0.68
TCOF1-215ENST00000515516 HDGFL2Q7Z4V5 671 aaPredicted RBP19.28■□□□□ 0.68
TCOF1-215ENST00000515516 DEFB132Q7Z7B7 95 aa19.28■□□□□ 0.68
TCOF1-215ENST00000515516 TCP11L2Q8N4U5 519 aa19.28■□□□□ 0.68
TCOF1-215ENST00000515516 NRKQ7Z2Y5 1582 aa19.27■□□□□ 0.68
TCOF1-215ENST00000515516 BAG6P46379 1132 aa19.27■□□□□ 0.68
TCOF1-215ENST00000515516 PDE3BQ13370 1112 aa19.27■□□□□ 0.68
TCOF1-215ENST00000515516 THRAP3Q9Y2W1 955 aaKnown RBP19.27■□□□□ 0.68
TCOF1-215ENST00000515516 SOX12O15370 315 aa19.26■□□□□ 0.67
TCOF1-215ENST00000515516 FAM182BQ5T319 152 aa19.26■□□□□ 0.67
TCOF1-215ENST00000515516 AATKQ6ZMQ8 1374 aa19.25■□□□□ 0.67
TCOF1-215ENST00000515516 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.25■□□□□ 0.67
TCOF1-215ENST00000515516 PUS7Q96PZ0 661 aaKnown RBP19.25■□□□□ 0.67
TCOF1-215ENST00000515516 CPSF1Q10570 1443 aaKnown RBP19.25■□□□□ 0.67
TCOF1-215ENST00000515516 CAMTA1Q9Y6Y1 1673 aa19.24■□□□□ 0.67
TCOF1-215ENST00000515516 FAM196AQ6ZSG2 479 aa19.24■□□□□ 0.67
TCOF1-215ENST00000515516 TERF2IPQ9NYB0 399 aa19.24■□□□□ 0.67
TCOF1-215ENST00000515516 BRWD3Q6RI45 1802 aa19.23■□□□□ 0.67
TCOF1-215ENST00000515516 ST20-MTHFSA0A0A6YYL1 179 aa19.23■□□□□ 0.67
TCOF1-215ENST00000515516 TOM1L2Q6ZVM7 507 aa19.23■□□□□ 0.67
TCOF1-215ENST00000515516 SLC12A5Q9H2X9 1139 aa19.23■□□□□ 0.67
TCOF1-215ENST00000515516 SLIT3O75094 1523 aa19.22■□□□□ 0.67
TCOF1-215ENST00000515516 PCGF6Q9BYE7 350 aa19.22■□□□□ 0.67
TCOF1-215ENST00000515516 ARHGEF25Q86VW2 580 aa19.21■□□□□ 0.67
TCOF1-215ENST00000515516 COL5A2P05997 1499 aaPredicted RBP19.21■□□□□ 0.67
TCOF1-215ENST00000515516 CRB1P82279 1406 aa19.2■□□□□ 0.66
TCOF1-215ENST00000515516 CSB-PGBD3P0DP91 1061 aa19.2■□□□□ 0.66
TCOF1-215ENST00000515516 EP400Q96L91 3159 aa19.19■□□□□ 0.66
TCOF1-215ENST00000515516 THSD7AQ9UPZ6 1657 aa19.19■□□□□ 0.66
TCOF1-215ENST00000515516 NME9Q86XW9 330 aa19.18■□□□□ 0.66
TCOF1-215ENST00000515516 TESK2Q96S53 571 aa19.18■□□□□ 0.66
TCOF1-215ENST00000515516 TIMELESSQ9UNS1 1208 aa19.18■□□□□ 0.66
TCOF1-215ENST00000515516 AXIN2Q9Y2T1 843 aa19.18■□□□□ 0.66
TCOF1-215ENST00000515516 PIK3C2AO00443 1686 aa19.17■□□□□ 0.66
TCOF1-215ENST00000515516 LMO7Q8WWI1 1683 aa19.17■□□□□ 0.66
TCOF1-215ENST00000515516 TRIM37O94972 964 aa19.17■□□□□ 0.66
TCOF1-215ENST00000515516 EN1Q05925 392 aaPredicted RBP19.17■□□□□ 0.66
TCOF1-215ENST00000515516 WDR17Q8IZU2 1322 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms