RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 ABTB2Q8N961 1025 aa16.3■□□□□ 0.2
VCAN-212ENST00000515397 CCER1Q8TC90 406 aaPredicted RBP16.3■□□□□ 0.2
VCAN-212ENST00000515397 CHRNA2Q15822 529 aa16.29■□□□□ 0.2
VCAN-212ENST00000515397 CCDC9Q9Y3X0 531 aaKnown RBP16.29■□□□□ 0.2
VCAN-212ENST00000515397 ATRNO75882 1429 aa16.28■□□□□ 0.2
VCAN-212ENST00000515397 TRPM3Q9HCF6 1732 aaPredicted RBP16.28■□□□□ 0.2
VCAN-212ENST00000515397 ST20-MTHFSA0A0A6YYL1 179 aa16.28■□□□□ 0.2
VCAN-212ENST00000515397 GJD4Q96KN9 370 aaPredicted RBP16.28■□□□□ 0.2
VCAN-212ENST00000515397 RALGAPBQ86X10 1494 aa16.28■□□□□ 0.2
VCAN-212ENST00000515397 RGS12O14924 1447 aa16.28■□□□□ 0.2
VCAN-212ENST00000515397 BTG4Q9NY30 223 aa16.27■□□□□ 0.2
VCAN-212ENST00000515397 TMC1Q8TDI8 760 aa16.26■□□□□ 0.19
VCAN-212ENST00000515397 SLIT2O94813 1529 aa16.25■□□□□ 0.19
VCAN-212ENST00000515397 ZBTB7CA1YPR0 619 aa16.25■□□□□ 0.19
VCAN-212ENST00000515397 UPF1Q92900 1129 aaKnown RBP eCLIP16.25■□□□□ 0.19
VCAN-212ENST00000515397 PRDM11Q9NQV5 511 aa16.25■□□□□ 0.19
VCAN-212ENST00000515397 TOPAZ1Q8N9V7 1692 aa16.24■□□□□ 0.19
VCAN-212ENST00000515397 ALS2Q96Q42 1657 aa16.24■□□□□ 0.19
VCAN-212ENST00000515397 NLRP6P59044 892 aa16.24■□□□□ 0.19
VCAN-212ENST00000515397 SLC12A5Q9H2X9 1139 aa16.24■□□□□ 0.19
VCAN-212ENST00000515397 ITSN1Q15811 1721 aa16.24■□□□□ 0.19
VCAN-212ENST00000515397 KIAA0232Q92628 1395 aa16.24■□□□□ 0.19
VCAN-212ENST00000515397 MARF1Q9Y4F3 1742 aaKnown RBP16.22■□□□□ 0.19
VCAN-212ENST00000515397 SOX12O15370 315 aa16.22■□□□□ 0.19
VCAN-212ENST00000515397 VPS72Q15906 364 aa16.22■□□□□ 0.19
VCAN-212ENST00000515397 NLRP13Q86W25 1043 aa16.22■□□□□ 0.19
VCAN-212ENST00000515397 TESK2Q96S53 571 aa16.22■□□□□ 0.19
VCAN-212ENST00000515397 STRN4Q9NRL3 753 aa16.22■□□□□ 0.19
VCAN-212ENST00000515397 ZRANB1Q9UGI0 708 aa16.22■□□□□ 0.19
VCAN-212ENST00000515397 USP6P35125 1406 aa16.21■□□□□ 0.19
VCAN-212ENST00000515397 GCP02774 474 aa16.21■□□□□ 0.19
VCAN-212ENST00000515397 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.21■□□□□ 0.19
VCAN-212ENST00000515397 CDK12Q9NYV4 1490 aaPredicted RBP16.21■□□□□ 0.19
VCAN-212ENST00000515397 TTC21BQ7Z4L5 1316 aa16.2■□□□□ 0.18
VCAN-212ENST00000515397 ABCA3Q99758 1704 aa16.2■□□□□ 0.18
VCAN-212ENST00000515397 ATAD2Q6PL18 1390 aa16.19■□□□□ 0.18
VCAN-212ENST00000515397 A0A0G2JS52 829 aa16.19■□□□□ 0.18
VCAN-212ENST00000515397 MYT1Q01538 1121 aa16.19■□□□□ 0.18
VCAN-212ENST00000515397 FAM98CQ17RN3 349 aaKnown RBP16.19■□□□□ 0.18
VCAN-212ENST00000515397 SEPT12Q8IYM1 358 aa16.19■□□□□ 0.18
VCAN-212ENST00000515397 ZNF692Q9BU19 519 aaPredicted RBP16.19■□□□□ 0.18
VCAN-212ENST00000515397 CLSPNQ9HAW4 1339 aa16.19■□□□□ 0.18
VCAN-212ENST00000515397 KTN1Q86UP2 1357 aaKnown RBP16.18■□□□□ 0.18
VCAN-212ENST00000515397 USP19O94966 1318 aa16.18■□□□□ 0.18
VCAN-212ENST00000515397 USP47Q96K76 1375 aa16.17■□□□□ 0.18
VCAN-212ENST00000515397 SBNO2Q9Y2G9 1366 aa16.17■□□□□ 0.18
VCAN-212ENST00000515397 EVA1CP58658 441 aa16.17■□□□□ 0.18
VCAN-212ENST00000515397 USP35Q9P2H5 1018 aa16.17■□□□□ 0.18
VCAN-212ENST00000515397 SSH2Q76I76 1423 aa16.17■□□□□ 0.18
VCAN-212ENST00000515397 GLI3P10071 1580 aa16.17■□□□□ 0.18
VCAN-212ENST00000515397 TIMELESSQ9UNS1 1208 aa16.16■□□□□ 0.18
VCAN-212ENST00000515397 PLCH1Q4KWH8 1693 aa16.15■□□□□ 0.18
VCAN-212ENST00000515397 CPSF1Q10570 1443 aaKnown RBP16.15■□□□□ 0.18
VCAN-212ENST00000515397 NME9Q86XW9 330 aa16.15■□□□□ 0.18
VCAN-212ENST00000515397 LARP1Q6PKG0 1096 aaKnown RBP16.14■□□□□ 0.17
VCAN-212ENST00000515397 HDGFL2Q7Z4V5 671 aaPredicted RBP16.14■□□□□ 0.17
VCAN-212ENST00000515397 SPATA31A5Q5VU36 1347 aa16.14■□□□□ 0.17
VCAN-212ENST00000515397 SPATA31A7Q8IWB4 1347 aa16.14■□□□□ 0.17
VCAN-212ENST00000515397 CRYBG1Q9Y4K1 1723 aa16.14■□□□□ 0.17
VCAN-212ENST00000515397 FAM182BQ5T319 152 aa16.13■□□□□ 0.17
VCAN-212ENST00000515397 BRD4O60885 1362 aaPredicted RBP16.13■□□□□ 0.17
VCAN-212ENST00000515397 CD163L1Q9NR16 1453 aa16.12■□□□□ 0.17
VCAN-212ENST00000515397 ONECUT3O60422 494 aaPredicted RBP16.12■□□□□ 0.17
VCAN-212ENST00000515397 TMF1P82094 1093 aa16.12■□□□□ 0.17
VCAN-212ENST00000515397 AXIN2Q9Y2T1 843 aa16.12■□□□□ 0.17
VCAN-212ENST00000515397 COL14A1Q05707 1796 aaKnown RBP16.12■□□□□ 0.17
VCAN-212ENST00000515397 PHRF1Q9P1Y6 1649 aaKnown RBP16.12■□□□□ 0.17
VCAN-212ENST00000515397 TERF2IPQ9NYB0 399 aa16.11■□□□□ 0.17
VCAN-212ENST00000515397 TTC21AQ8NDW8 1320 aa16.11■□□□□ 0.17
VCAN-212ENST00000515397 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.11■□□□□ 0.17
VCAN-212ENST00000515397 KRT27Q7Z3Y8 459 aa16.1■□□□□ 0.17
VCAN-212ENST00000515397 POLR3GLQ9BT43 218 aa16.1■□□□□ 0.17
VCAN-212ENST00000515397 CAMTA1Q9Y6Y1 1673 aa16.1■□□□□ 0.17
VCAN-212ENST00000515397 SPATA31A1Q5TZJ5 1347 aa16.1■□□□□ 0.17
VCAN-212ENST00000515397 NWD2Q9ULI1 1742 aa16.1■□□□□ 0.17
VCAN-212ENST00000515397 A0A1W2PP64 1363 aa16.1■□□□□ 0.17
VCAN-212ENST00000515397 CPDO75976 1380 aa16.1■□□□□ 0.17
VCAN-212ENST00000515397 NRKQ7Z2Y5 1582 aa16.09■□□□□ 0.17
VCAN-212ENST00000515397 FBLN1P23142 703 aa16.09■□□□□ 0.17
VCAN-212ENST00000515397 PUS7Q96PZ0 661 aaKnown RBP16.09■□□□□ 0.17
VCAN-212ENST00000515397 PIK3C2AO00443 1686 aa16.08■□□□□ 0.17
VCAN-212ENST00000515397 ARHGEF25Q86VW2 580 aa16.08■□□□□ 0.16
VCAN-212ENST00000515397 NRAPQ86VF7 1730 aa16.08■□□□□ 0.16
VCAN-212ENST00000515397 KCNH5Q8NCM2 988 aa16.07■□□□□ 0.16
VCAN-212ENST00000515397 AKAP12Q02952 1782 aa16.06■□□□□ 0.16
VCAN-212ENST00000515397 SLC24A1O60721 1099 aa16.06■□□□□ 0.16
VCAN-212ENST00000515397 HSPA5P11021 654 aaKnown RBP16.06■□□□□ 0.16
VCAN-212ENST00000515397 BRWD3Q6RI45 1802 aa16.05■□□□□ 0.16
VCAN-212ENST00000515397 SLIT3O75094 1523 aa16.04■□□□□ 0.16
VCAN-212ENST00000515397 AATKQ6ZMQ8 1374 aa16.04■□□□□ 0.16
VCAN-212ENST00000515397 TOM1L2Q6ZVM7 507 aa16.04■□□□□ 0.16
VCAN-212ENST00000515397 DEFB132Q7Z7B7 95 aa16.04■□□□□ 0.16
VCAN-212ENST00000515397 TCP11L2Q8N4U5 519 aa16.04■□□□□ 0.16
VCAN-212ENST00000515397 EDC4Q6P2E9 1401 aaKnown RBP16.03■□□□□ 0.16
VCAN-212ENST00000515397 EP400Q96L91 3159 aa16.03■□□□□ 0.16
VCAN-212ENST00000515397 CSB-PGBD3P0DP91 1061 aa16.03■□□□□ 0.16
VCAN-212ENST00000515397 USP31Q70CQ4 1352 aa16.02■□□□□ 0.16
VCAN-212ENST00000515397 EIF4G2P78344 907 aaKnown RBP eCLIP16.02■□□□□ 0.16
VCAN-212ENST00000515397 GGNBP2Q9H3C7 697 aa16.02■□□□□ 0.16
VCAN-212ENST00000515397 COL5A2P05997 1499 aaPredicted RBP16.02■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms