RNA–Protein interactions for RNA: ENST00000514335.1

NIPBL-208, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 2

Gene NIPBL, Length 2,948 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-208ENST00000514335 PREX2Q70Z35 1606 aa9.09□□□□□ -0.95
NIPBL-208ENST00000514335 TPM2P07951 284 aa9.09□□□□□ -0.95
NIPBL-208ENST00000514335 YEATS2Q9ULM3 1422 aa9.09□□□□□ -0.95
NIPBL-208ENST00000514335 CAPN2P17655 700 aa9.09□□□□□ -0.95
NIPBL-208ENST00000514335 CLCN1P35523 988 aa9.09□□□□□ -0.95
NIPBL-208ENST00000514335 CCT2P78371 535 aaKnown RBP9.09□□□□□ -0.95
NIPBL-208ENST00000514335 MSL3Q8N5Y2 521 aaKnown RBP9.09□□□□□ -0.95
NIPBL-208ENST00000514335 FRAT1Q92837 279 aaPredicted RBP9.09□□□□□ -0.95
NIPBL-208ENST00000514335 CAMSAP2Q08AD1 1489 aa9.09□□□□□ -0.95
NIPBL-208ENST00000514335 ADGBQ8N7X0 1667 aa9.08□□□□□ -0.96
NIPBL-208ENST00000514335 ATP10BO94823 1461 aa9.08□□□□□ -0.96
NIPBL-208ENST00000514335 IRF5Q13568 498 aa9.08□□□□□ -0.96
NIPBL-208ENST00000514335 MAMSTRQ6ZN01 415 aa9.08□□□□□ -0.96
NIPBL-208ENST00000514335 CEP83Q9Y592 693 aa9.08□□□□□ -0.96
NIPBL-208ENST00000514335 C1QTNF12Q5T7M4 302 aa9.08□□□□□ -0.96
NIPBL-208ENST00000514335 CGNQ9P2M7 1197 aaKnown RBP9.08□□□□□ -0.96
NIPBL-208ENST00000514335 POLR1AO95602 1720 aaPredicted RBP9.08□□□□□ -0.96
NIPBL-208ENST00000514335 ZKSCAN2Q63HK3 967 aa9.08□□□□□ -0.96
NIPBL-208ENST00000514335 SPATA32Q96LK8 384 aa9.08□□□□□ -0.96
NIPBL-208ENST00000514335 RPGRIP1LQ68CZ1 1315 aa9.07□□□□□ -0.96
NIPBL-208ENST00000514335 NRDCO43847 1150 aa9.07□□□□□ -0.96
NIPBL-208ENST00000514335 ANKRD13AQ8IZ07 590 aa9.07□□□□□ -0.96
NIPBL-208ENST00000514335 LETM1O95202 739 aaPredicted RBP9.07□□□□□ -0.96
NIPBL-208ENST00000514335 TDO2P48775 406 aa9.07□□□□□ -0.96
NIPBL-208ENST00000514335 C3P01024 1663 aa9.06□□□□□ -0.96
NIPBL-208ENST00000514335 GAS2L2Q8NHY3 880 aa9.06□□□□□ -0.96
NIPBL-208ENST00000514335 ZNF518AQ6AHZ1 1483 aa9.06□□□□□ -0.96
NIPBL-208ENST00000514335 DIP2CQ9Y2E4 1556 aa9.06□□□□□ -0.96
NIPBL-208ENST00000514335 PLEKHH2Q8IVE3 1493 aa9.06□□□□□ -0.96
NIPBL-208ENST00000514335 RAB11FIP3O75154 756 aa9.06□□□□□ -0.96
NIPBL-208ENST00000514335 ZC3H12AQ5D1E8 599 aaKnown RBP9.06□□□□□ -0.96
NIPBL-208ENST00000514335 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.06□□□□□ -0.96
NIPBL-208ENST00000514335 CSPP1Q1MSJ5 1256 aa9.05□□□□□ -0.96
NIPBL-208ENST00000514335 SPRYD3Q8NCJ5 442 aa9.05□□□□□ -0.96
NIPBL-208ENST00000514335 TRAIPQ9BWF2 469 aa9.05□□□□□ -0.96
NIPBL-208ENST00000514335 KDM4CQ9H3R0 1056 aa9.05□□□□□ -0.96
NIPBL-208ENST00000514335 BSDC1Q9NW68 430 aaPredicted RBP9.05□□□□□ -0.96
NIPBL-208ENST00000514335 TMC1Q8TDI8 760 aa9.05□□□□□ -0.96
NIPBL-208ENST00000514335 ZBTB47Q9UFB7 747 aaPredicted RBP9.05□□□□□ -0.96
NIPBL-208ENST00000514335 LONRF3Q496Y0 759 aa9.04□□□□□ -0.96
NIPBL-208ENST00000514335 ZFYVE27Q5T4F4 411 aa9.04□□□□□ -0.96
NIPBL-208ENST00000514335 MAP7D2Q96T17 732 aa9.04□□□□□ -0.96
NIPBL-208ENST00000514335 CCDC94Q9BW85 323 aaPredicted RBP9.04□□□□□ -0.96
NIPBL-208ENST00000514335 NUB1Q9Y5A7 615 aa9.04□□□□□ -0.96
NIPBL-208ENST00000514335 MPHOSPH10O00566 681 aaKnown RBP9.04□□□□□ -0.96
NIPBL-208ENST00000514335 RGL2O15211 777 aa9.04□□□□□ -0.96
NIPBL-208ENST00000514335 PLCH2O75038 1416 aa9.04□□□□□ -0.96
NIPBL-208ENST00000514335 MKRN3Q13064 507 aaKnown RBP9.04□□□□□ -0.96
NIPBL-208ENST00000514335 CXorf38Q8TB03 319 aa9.04□□□□□ -0.96
NIPBL-208ENST00000514335 IPO9Q96P70 1041 aaKnown RBP9.04□□□□□ -0.96
NIPBL-208ENST00000514335 ANP32CO43423 234 aa9.04□□□□□ -0.96
NIPBL-208ENST00000514335 ANP32AP39687 249 aaKnown RBP9.04□□□□□ -0.96
NIPBL-208ENST00000514335 ITFG2Q969R8 447 aa9.04□□□□□ -0.96
NIPBL-208ENST00000514335 INO80Q9ULG1 1556 aaPredicted RBP9.03□□□□□ -0.96
NIPBL-208ENST00000514335 NCOA1Q15788 1441 aa9.03□□□□□ -0.96
NIPBL-208ENST00000514335 SETDB1Q15047 1291 aa9.03□□□□□ -0.96
NIPBL-208ENST00000514335 TCOF1Q13428 1488 aaKnown RBP9.03□□□□□ -0.96
NIPBL-208ENST00000514335 EIF2AK4Q9P2K8 1649 aaKnown RBP9.03□□□□□ -0.96
NIPBL-208ENST00000514335 CCDC18Q5T9S5 1454 aa9.03□□□□□ -0.96
NIPBL-208ENST00000514335 VTI1AQ96AJ9 217 aa9.03□□□□□ -0.96
NIPBL-208ENST00000514335 GTPBP4Q9BZE4 634 aaKnown RBP9.03□□□□□ -0.96
NIPBL-208ENST00000514335 ANKRD62A6NC57 917 aa9.02□□□□□ -0.96
NIPBL-208ENST00000514335 MFSD4BQ5TF39 518 aa9.02□□□□□ -0.96
NIPBL-208ENST00000514335 FBXW7Q969H0 707 aa9.02□□□□□ -0.96
NIPBL-208ENST00000514335 ABCC1P33527 1531 aa9.02□□□□□ -0.97
NIPBL-208ENST00000514335 CCDC172P0C7W6 258 aa9.02□□□□□ -0.97
NIPBL-208ENST00000514335 MKL1Q969V6 931 aa9.02□□□□□ -0.97
NIPBL-208ENST00000514335 ZC3H4Q9UPT8 1303 aaKnown RBP9.02□□□□□ -0.97
NIPBL-208ENST00000514335 MYO3AQ8NEV4 1616 aa9.02□□□□□ -0.97
NIPBL-208ENST00000514335 SF3A1Q15459 793 aaKnown RBP9.01□□□□□ -0.97
NIPBL-208ENST00000514335 MICALL1Q8N3F8 863 aa9.01□□□□□ -0.97
NIPBL-208ENST00000514335 FRMD4BQ9Y2L6 1034 aa9.01□□□□□ -0.97
NIPBL-208ENST00000514335 MED14O60244 1454 aa9.01□□□□□ -0.97
NIPBL-208ENST00000514335 NUP153P49790 1475 aaKnown RBP9.01□□□□□ -0.97
NIPBL-208ENST00000514335 CTDP1Q9Y5B0 961 aaPredicted RBP9.01□□□□□ -0.97
NIPBL-208ENST00000514335 CAPN15O75808 1086 aa9.01□□□□□ -0.97
NIPBL-208ENST00000514335 NEXNQ0ZGT2 675 aa9.01□□□□□ -0.97
NIPBL-208ENST00000514335 ACRBPQ8NEB7 543 aa9.01□□□□□ -0.97
NIPBL-208ENST00000514335 SMC3Q9UQE7 1217 aa9.01□□□□□ -0.97
NIPBL-208ENST00000514335 KDM5DQ9BY66 1539 aa9.01□□□□□ -0.97
NIPBL-208ENST00000514335 SIGLEC1Q9BZZ2 1709 aa9.01□□□□□ -0.97
NIPBL-208ENST00000514335 RNF17Q9BXT8 1623 aaKnown RBP9□□□□□ -0.97
NIPBL-208ENST00000514335 SLC4A2P04920 1241 aa9□□□□□ -0.97
NIPBL-208ENST00000514335 NAT1P18440 290 aa9□□□□□ -0.97
NIPBL-208ENST00000514335 TRIM6-TRIM34B2RNG4 842 aa9□□□□□ -0.97
NIPBL-208ENST00000514335 RBM5P52756 815 aaKnown RBP eCLIP9□□□□□ -0.97
NIPBL-208ENST00000514335 ZRSR2Q15696 482 aaKnown RBP9□□□□□ -0.97
NIPBL-208ENST00000514335 RETREG2Q8NC44 543 aa9□□□□□ -0.97
NIPBL-208ENST00000514335 TRIM34Q9BYJ4 488 aa9□□□□□ -0.97
NIPBL-208ENST00000514335 KLHL42Q9P2K6 505 aa9□□□□□ -0.97
NIPBL-208ENST00000514335 ERCC3P19447 782 aa8.99□□□□□ -0.97
NIPBL-208ENST00000514335 ZCRB1Q8TBF4 217 aaKnown RBP8.99□□□□□ -0.97
NIPBL-208ENST00000514335 SLC24A3Q9HC58 644 aa8.99□□□□□ -0.97
NIPBL-208ENST00000514335 KIAA1107Q9UPP5 1409 aa8.98□□□□□ -0.97
NIPBL-208ENST00000514335 MAST1Q9Y2H9 1570 aa8.98□□□□□ -0.97
NIPBL-208ENST00000514335 PAX7P23759 505 aa8.98□□□□□ -0.97
NIPBL-208ENST00000514335 CLEC4GQ6UXB4 293 aa8.98□□□□□ -0.97
NIPBL-208ENST00000514335 FAM13BQ9NYF5 915 aa8.98□□□□□ -0.97
NIPBL-208ENST00000514335 KCNJ4P48050 445 aa8.98□□□□□ -0.97
NIPBL-208ENST00000514335 UVSSAQ2YD98 709 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms