RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 AHDC1Q5TGY3 1603 aaPredicted RBP9.88□□□□□ -0.83
CLIP1-205ENST00000514271 TCERG1O14776 1098 aaKnown RBP9.88□□□□□ -0.83
CLIP1-205ENST00000514271 TULP4Q9NRJ4 1543 aa9.87□□□□□ -0.83
CLIP1-205ENST00000514271 ANO8Q9HCE9 1232 aaPredicted RBP9.87□□□□□ -0.83
CLIP1-205ENST00000514271 NHSL1Q5SYE7 1610 aa9.87□□□□□ -0.83
CLIP1-205ENST00000514271 NINLQ9Y2I6 1382 aa9.87□□□□□ -0.83
CLIP1-205ENST00000514271 N4BP2Q86UW6 1770 aaPredicted RBP9.86□□□□□ -0.83
CLIP1-205ENST00000514271 TOPAZ1Q8N9V7 1692 aa9.86□□□□□ -0.83
CLIP1-205ENST00000514271 C8orf34Q49A92 452 aa9.86□□□□□ -0.83
CLIP1-205ENST00000514271 PDE3BQ13370 1112 aa9.86□□□□□ -0.83
CLIP1-205ENST00000514271 FBXO41Q8TF61 875 aa9.86□□□□□ -0.83
CLIP1-205ENST00000514271 CFAP70Q5T0N1 1121 aa9.86□□□□□ -0.83
CLIP1-205ENST00000514271 SAMD1Q6SPF0 538 aaPredicted RBP9.86□□□□□ -0.83
CLIP1-205ENST00000514271 DHX37Q8IY37 1157 aaKnown RBP9.86□□□□□ -0.83
CLIP1-205ENST00000514271 ROBO2Q9HCK4 1378 aa9.85□□□□□ -0.83
CLIP1-205ENST00000514271 SALL2Q9Y467 1007 aaPredicted RBP9.85□□□□□ -0.83
CLIP1-205ENST00000514271 ATF3P18847 181 aa9.84□□□□□ -0.83
CLIP1-205ENST00000514271 IL27Q8NEV9 243 aa9.84□□□□□ -0.83
CLIP1-205ENST00000514271 DISP3Q9P2K9 1392 aa9.84□□□□□ -0.83
CLIP1-205ENST00000514271 CDCA8Q53HL2 280 aa9.84□□□□□ -0.83
CLIP1-205ENST00000514271 KDM2AQ9Y2K7 1162 aa9.84□□□□□ -0.83
CLIP1-205ENST00000514271 CENPJQ9HC77 1338 aaPredicted RBP9.84□□□□□ -0.83
CLIP1-205ENST00000514271 RALBP1Q15311 655 aa9.83□□□□□ -0.84
CLIP1-205ENST00000514271 MST1RQ04912 1400 aa9.83□□□□□ -0.84
CLIP1-205ENST00000514271 PLEKHH1Q9ULM0 1364 aa9.83□□□□□ -0.84
CLIP1-205ENST00000514271 RNF39Q9H2S5 420 aa9.83□□□□□ -0.84
CLIP1-205ENST00000514271 MRS2Q9HD23 443 aa9.83□□□□□ -0.84
CLIP1-205ENST00000514271 POGKQ9P215 609 aa9.83□□□□□ -0.84
CLIP1-205ENST00000514271 ATAD2Q6PL18 1390 aa9.82□□□□□ -0.84
CLIP1-205ENST00000514271 NUTM2DQ5VT03 806 aaPredicted RBP9.82□□□□□ -0.84
CLIP1-205ENST00000514271 PDE4AP27815 886 aa9.82□□□□□ -0.84
CLIP1-205ENST00000514271 ROBO1Q9Y6N7 1651 aa9.81□□□□□ -0.84
CLIP1-205ENST00000514271 ANTXR1Q9H6X2 564 aa9.81□□□□□ -0.84
CLIP1-205ENST00000514271 EVC2Q86UK5 1308 aa9.81□□□□□ -0.84
CLIP1-205ENST00000514271 CARD11Q9BXL7 1154 aa9.8□□□□□ -0.84
CLIP1-205ENST00000514271 C1orf167Q5SNV9 1468 aa9.8□□□□□ -0.84
CLIP1-205ENST00000514271 PKNOX2Q96KN3 472 aa9.8□□□□□ -0.84
CLIP1-205ENST00000514271 USP54Q70EL1 1684 aa9.79□□□□□ -0.84
CLIP1-205ENST00000514271 ATP7BP35670 1465 aa9.79□□□□□ -0.84
CLIP1-205ENST00000514271 COL22A1Q8NFW1 1626 aaPredicted RBP9.79□□□□□ -0.84
CLIP1-205ENST00000514271 PHLPP1O60346 1717 aa9.79□□□□□ -0.84
CLIP1-205ENST00000514271 AKAP12Q02952 1782 aa9.79□□□□□ -0.84
CLIP1-205ENST00000514271 CCDC136Q96JN2 1154 aa9.79□□□□□ -0.84
CLIP1-205ENST00000514271 PRAM1Q96QH2 718 aa9.79□□□□□ -0.84
CLIP1-205ENST00000514271 DDIT3P35638 169 aa9.78□□□□□ -0.84
CLIP1-205ENST00000514271 EXOC6Q8TAG9 804 aa9.78□□□□□ -0.84
CLIP1-205ENST00000514271 WASLO00401 505 aaPredicted RBP9.78□□□□□ -0.84
CLIP1-205ENST00000514271 C1QBPQ07021 282 aaKnown RBP9.78□□□□□ -0.84
CLIP1-205ENST00000514271 COL3A1P02461 1466 aaPredicted RBP9.77□□□□□ -0.84
CLIP1-205ENST00000514271 TMEM132EQ6IEE7 984 aa9.77□□□□□ -0.85
CLIP1-205ENST00000514271 MED1Q15648 1581 aaPredicted RBP9.77□□□□□ -0.85
CLIP1-205ENST00000514271 SBNO1A3KN83 1393 aa9.77□□□□□ -0.85
CLIP1-205ENST00000514271 UBAP1LF5GYI3 381 aa9.77□□□□□ -0.85
CLIP1-205ENST00000514271 COL16A1Q07092 1604 aaPredicted RBP9.76□□□□□ -0.85
CLIP1-205ENST00000514271 SLAIN2Q9P270 581 aa9.76□□□□□ -0.85
CLIP1-205ENST00000514271 TRAK1Q9UPV9 953 aa9.76□□□□□ -0.85
CLIP1-205ENST00000514271 MON2Q7Z3U7 1717 aa9.76□□□□□ -0.85
CLIP1-205ENST00000514271 DUSP27Q5VZP5 1158 aa9.76□□□□□ -0.85
CLIP1-205ENST00000514271 NPHP3Q7Z494 1330 aa9.76□□□□□ -0.85
CLIP1-205ENST00000514271 POLR3AO14802 1390 aaPredicted RBP9.75□□□□□ -0.85
CLIP1-205ENST00000514271 STK26Q9P289 416 aa9.75□□□□□ -0.85
CLIP1-205ENST00000514271 FSD2A1L4K1 749 aa9.75□□□□□ -0.85
CLIP1-205ENST00000514271 DCAF8L1A6NGE4 600 aa9.75□□□□□ -0.85
CLIP1-205ENST00000514271 TMF1P82094 1093 aa9.75□□□□□ -0.85
CLIP1-205ENST00000514271 PSME1Q06323 249 aa9.75□□□□□ -0.85
CLIP1-205ENST00000514271 NBPF1Q3BBV0 1214 aa9.75□□□□□ -0.85
CLIP1-205ENST00000514271 TRPM3Q9HCF6 1732 aaPredicted RBP9.75□□□□□ -0.85
CLIP1-205ENST00000514271 PLEKHG3A1L390 1219 aa9.74□□□□□ -0.85
CLIP1-205ENST00000514271 BRD2P25440 801 aaKnown RBP9.74□□□□□ -0.85
CLIP1-205ENST00000514271 TAF7LQ5H9L4 462 aa9.74□□□□□ -0.85
CLIP1-205ENST00000514271 CNKSR2Q8WXI2 1034 aa9.74□□□□□ -0.85
CLIP1-205ENST00000514271 ABCC6O95255 1503 aa9.74□□□□□ -0.85
CLIP1-205ENST00000514271 ZNF692Q9BU19 519 aaPredicted RBP9.73□□□□□ -0.85
CLIP1-205ENST00000514271 ARHGEF10O15013 1369 aa9.73□□□□□ -0.85
CLIP1-205ENST00000514271 CDK11BP21127 795 aaKnown RBP9.73□□□□□ -0.85
CLIP1-205ENST00000514271 KIF20BQ96Q89 1820 aa9.73□□□□□ -0.85
CLIP1-205ENST00000514271 NRKQ7Z2Y5 1582 aa9.73□□□□□ -0.85
CLIP1-205ENST00000514271 NLRP13Q86W25 1043 aa9.73□□□□□ -0.85
CLIP1-205ENST00000514271 FAM9BQ8IZU0 186 aa9.73□□□□□ -0.85
CLIP1-205ENST00000514271 RCAN3Q9UKA8 241 aa9.73□□□□□ -0.85
CLIP1-205ENST00000514271 RGPD8O14715 1765 aaPredicted RBP9.73□□□□□ -0.85
CLIP1-205ENST00000514271 ALS2Q96Q42 1657 aa9.72□□□□□ -0.85
CLIP1-205ENST00000514271 PXDNQ92626 1479 aa9.72□□□□□ -0.85
CLIP1-205ENST00000514271 CCDC61Q9Y6R9 512 aa9.72□□□□□ -0.85
CLIP1-205ENST00000514271 JCADQ9P266 1359 aa9.72□□□□□ -0.85
CLIP1-205ENST00000514271 HOXD11P31277 338 aaPredicted RBP9.72□□□□□ -0.85
CLIP1-205ENST00000514271 VSIG10Q8N0Z9 540 aa9.72□□□□□ -0.85
CLIP1-205ENST00000514271 SOS2Q07890 1332 aaPredicted RBP9.72□□□□□ -0.85
CLIP1-205ENST00000514271 SPATA31A6Q5VVP1 1343 aa9.71□□□□□ -0.85
CLIP1-205ENST00000514271 WAPLQ7Z5K2 1190 aa9.71□□□□□ -0.85
CLIP1-205ENST00000514271 MARF1Q9Y4F3 1742 aaKnown RBP9.71□□□□□ -0.85
CLIP1-205ENST00000514271 FAM43AQ8N2R8 423 aa9.71□□□□□ -0.86
CLIP1-205ENST00000514271 CDK19Q9BWU1 502 aa9.71□□□□□ -0.86
CLIP1-205ENST00000514271 PHF8Q9UPP1 1060 aa9.71□□□□□ -0.86
CLIP1-205ENST00000514271 TTC21AQ8NDW8 1320 aa9.71□□□□□ -0.86
CLIP1-205ENST00000514271 GSE1Q14687 1217 aa9.7□□□□□ -0.86
CLIP1-205ENST00000514271 NFKBIBQ15653 356 aa9.7□□□□□ -0.86
CLIP1-205ENST00000514271 BRINP3Q76B58 766 aa9.7□□□□□ -0.86
CLIP1-205ENST00000514271 BCL11BQ9C0K0 894 aaPredicted RBP9.7□□□□□ -0.86
CLIP1-205ENST00000514271 TNS3Q68CZ2 1445 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms