RNA–Protein interactions for RNA: ENST00000513841.1

ARHGEF28-213, Transcript of Rho guanine nucleotide exchange factor 28, humanhuman

TSL 3

Gene ARHGEF28, Length 710 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF28-213ENST00000513841 CCDC9Q9Y3X0 531 aaKnown RBP16.38■□□□□ 0.21
ARHGEF28-213ENST00000513841 TRPM1Q7Z4N2 1603 aa16.37■□□□□ 0.21
ARHGEF28-213ENST00000513841 TIMELESSQ9UNS1 1208 aa16.37■□□□□ 0.21
ARHGEF28-213ENST00000513841 CDK12Q9NYV4 1490 aaPredicted RBP16.36■□□□□ 0.21
ARHGEF28-213ENST00000513841 ZC3H6P61129 1189 aaKnown RBP16.36■□□□□ 0.21
ARHGEF28-213ENST00000513841 NLRP13Q86W25 1043 aa16.36■□□□□ 0.21
ARHGEF28-213ENST00000513841 UPF1Q92900 1129 aaKnown RBP eCLIP16.36■□□□□ 0.21
ARHGEF28-213ENST00000513841 BTG4Q9NY30 223 aa16.36■□□□□ 0.21
ARHGEF28-213ENST00000513841 ATRNO75882 1429 aa16.36■□□□□ 0.21
ARHGEF28-213ENST00000513841 VPS72Q15906 364 aa16.35■□□□□ 0.21
ARHGEF28-213ENST00000513841 PRDM11Q9NQV5 511 aa16.34■□□□□ 0.21
ARHGEF28-213ENST00000513841 SLIT2O94813 1529 aa16.34■□□□□ 0.21
ARHGEF28-213ENST00000513841 ST20-MTHFSA0A0A6YYL1 179 aa16.33■□□□□ 0.2
ARHGEF28-213ENST00000513841 SLC24A1O60721 1099 aa16.33■□□□□ 0.2
ARHGEF28-213ENST00000513841 NLRP6P59044 892 aa16.33■□□□□ 0.2
ARHGEF28-213ENST00000513841 CCER1Q8TC90 406 aaPredicted RBP16.33■□□□□ 0.2
ARHGEF28-213ENST00000513841 CLSPNQ9HAW4 1339 aa16.33■□□□□ 0.2
ARHGEF28-213ENST00000513841 TMC1Q8TDI8 760 aa16.32■□□□□ 0.2
ARHGEF28-213ENST00000513841 BRD4O60885 1362 aaPredicted RBP16.31■□□□□ 0.2
ARHGEF28-213ENST00000513841 GCP02774 474 aa16.31■□□□□ 0.2
ARHGEF28-213ENST00000513841 EVA1CP58658 441 aa16.31■□□□□ 0.2
ARHGEF28-213ENST00000513841 CHRNA2Q15822 529 aa16.31■□□□□ 0.2
ARHGEF28-213ENST00000513841 ITSN1Q15811 1721 aa16.31■□□□□ 0.2
ARHGEF28-213ENST00000513841 TRPM3Q9HCF6 1732 aaPredicted RBP16.31■□□□□ 0.2
ARHGEF28-213ENST00000513841 QRICH2Q9H0J4 1663 aa16.3■□□□□ 0.2
ARHGEF28-213ENST00000513841 RALGAPBQ86X10 1494 aa16.3■□□□□ 0.2
ARHGEF28-213ENST00000513841 RGS12O14924 1447 aa16.3■□□□□ 0.2
ARHGEF28-213ENST00000513841 ATAD2Q6PL18 1390 aa16.3■□□□□ 0.2
ARHGEF28-213ENST00000513841 ONECUT3O60422 494 aaPredicted RBP16.3■□□□□ 0.2
ARHGEF28-213ENST00000513841 KIAA0232Q92628 1395 aa16.29■□□□□ 0.2
ARHGEF28-213ENST00000513841 SEPT12Q8IYM1 358 aa16.29■□□□□ 0.2
ARHGEF28-213ENST00000513841 PUS7Q96PZ0 661 aaKnown RBP16.29■□□□□ 0.2
ARHGEF28-213ENST00000513841 SLC12A5Q9H2X9 1139 aa16.29■□□□□ 0.2
ARHGEF28-213ENST00000513841 MARF1Q9Y4F3 1742 aaKnown RBP16.28■□□□□ 0.2
ARHGEF28-213ENST00000513841 SBNO2Q9Y2G9 1366 aa16.28■□□□□ 0.2
ARHGEF28-213ENST00000513841 TTC21BQ7Z4L5 1316 aa16.28■□□□□ 0.2
ARHGEF28-213ENST00000513841 ALS2Q96Q42 1657 aa16.27■□□□□ 0.2
ARHGEF28-213ENST00000513841 TESK2Q96S53 571 aa16.27■□□□□ 0.2
ARHGEF28-213ENST00000513841 STRN4Q9NRL3 753 aa16.27■□□□□ 0.2
ARHGEF28-213ENST00000513841 USP6P35125 1406 aa16.27■□□□□ 0.19
ARHGEF28-213ENST00000513841 A0A0G2JS52 829 aa16.26■□□□□ 0.19
ARHGEF28-213ENST00000513841 ZBTB7CA1YPR0 619 aa16.26■□□□□ 0.19
ARHGEF28-213ENST00000513841 MYT1Q01538 1121 aa16.26■□□□□ 0.19
ARHGEF28-213ENST00000513841 HDGFL2Q7Z4V5 671 aaPredicted RBP16.26■□□□□ 0.19
ARHGEF28-213ENST00000513841 KTN1Q86UP2 1357 aaKnown RBP16.26■□□□□ 0.19
ARHGEF28-213ENST00000513841 USP19O94966 1318 aa16.25■□□□□ 0.19
ARHGEF28-213ENST00000513841 FAM98CQ17RN3 349 aaKnown RBP16.25■□□□□ 0.19
ARHGEF28-213ENST00000513841 TERF2IPQ9NYB0 399 aa16.25■□□□□ 0.19
ARHGEF28-213ENST00000513841 TOPAZ1Q8N9V7 1692 aa16.24■□□□□ 0.19
ARHGEF28-213ENST00000513841 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.24■□□□□ 0.19
ARHGEF28-213ENST00000513841 SSH2Q76I76 1423 aa16.24■□□□□ 0.19
ARHGEF28-213ENST00000513841 SPATA31A5Q5VU36 1347 aa16.23■□□□□ 0.19
ARHGEF28-213ENST00000513841 SPATA31A7Q8IWB4 1347 aa16.23■□□□□ 0.19
ARHGEF28-213ENST00000513841 TTC21AQ8NDW8 1320 aa16.23■□□□□ 0.19
ARHGEF28-213ENST00000513841 TMF1P82094 1093 aa16.23■□□□□ 0.19
ARHGEF28-213ENST00000513841 CCDC125Q86Z20 511 aa16.23■□□□□ 0.19
ARHGEF28-213ENST00000513841 KCNH5Q8NCM2 988 aa16.23■□□□□ 0.19
ARHGEF28-213ENST00000513841 CPSF1Q10570 1443 aaKnown RBP16.22■□□□□ 0.19
ARHGEF28-213ENST00000513841 KRT27Q7Z3Y8 459 aa16.22■□□□□ 0.19
ARHGEF28-213ENST00000513841 USP35Q9P2H5 1018 aa16.22■□□□□ 0.19
ARHGEF28-213ENST00000513841 SOX12O15370 315 aa16.21■□□□□ 0.19
ARHGEF28-213ENST00000513841 CPDO75976 1380 aa16.21■□□□□ 0.19
ARHGEF28-213ENST00000513841 LARP1Q6PKG0 1096 aaKnown RBP16.2■□□□□ 0.18
ARHGEF28-213ENST00000513841 ZRANB1Q9UGI0 708 aa16.2■□□□□ 0.18
ARHGEF28-213ENST00000513841 COL14A1Q05707 1796 aaKnown RBP16.2■□□□□ 0.18
ARHGEF28-213ENST00000513841 SPATA31A1Q5TZJ5 1347 aa16.19■□□□□ 0.18
ARHGEF28-213ENST00000513841 GLI3P10071 1580 aa16.19■□□□□ 0.18
ARHGEF28-213ENST00000513841 USP47Q96K76 1375 aa16.19■□□□□ 0.18
ARHGEF28-213ENST00000513841 CDCA8Q53HL2 280 aa16.19■□□□□ 0.18
ARHGEF28-213ENST00000513841 ABCA3Q99758 1704 aa16.19■□□□□ 0.18
ARHGEF28-213ENST00000513841 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.19■□□□□ 0.18
ARHGEF28-213ENST00000513841 ARHGEF25Q86VW2 580 aa16.18■□□□□ 0.18
ARHGEF28-213ENST00000513841 NME9Q86XW9 330 aa16.18■□□□□ 0.18
ARHGEF28-213ENST00000513841 NWD2Q9ULI1 1742 aa16.18■□□□□ 0.18
ARHGEF28-213ENST00000513841 PLCH1Q4KWH8 1693 aa16.16■□□□□ 0.18
ARHGEF28-213ENST00000513841 TCP11L2Q8N4U5 519 aa16.16■□□□□ 0.18
ARHGEF28-213ENST00000513841 AXIN2Q9Y2T1 843 aa16.16■□□□□ 0.18
ARHGEF28-213ENST00000513841 AATKQ6ZMQ8 1374 aa16.15■□□□□ 0.18
ARHGEF28-213ENST00000513841 SF3B2Q13435 895 aaKnown RBP16.15■□□□□ 0.18
ARHGEF28-213ENST00000513841 BARGINQ6ZT62 677 aa16.15■□□□□ 0.18
ARHGEF28-213ENST00000513841 CAMTA1Q9Y6Y1 1673 aa16.14■□□□□ 0.18
ARHGEF28-213ENST00000513841 FAM182BQ5T319 152 aa16.14■□□□□ 0.17
ARHGEF28-213ENST00000513841 TOM1L2Q6ZVM7 507 aa16.14■□□□□ 0.17
ARHGEF28-213ENST00000513841 THRAP3Q9Y2W1 955 aaKnown RBP16.14■□□□□ 0.17
ARHGEF28-213ENST00000513841 CRYBG1Q9Y4K1 1723 aa16.14■□□□□ 0.17
ARHGEF28-213ENST00000513841 USP31Q70CQ4 1352 aa16.13■□□□□ 0.17
ARHGEF28-213ENST00000513841 CSB-PGBD3P0DP91 1061 aa16.13■□□□□ 0.17
ARHGEF28-213ENST00000513841 PDE3BQ13370 1112 aa16.13■□□□□ 0.17
ARHGEF28-213ENST00000513841 CD163L1Q9NR16 1453 aa16.13■□□□□ 0.17
ARHGEF28-213ENST00000513841 A0A1W2PP64 1363 aa16.13■□□□□ 0.17
ARHGEF28-213ENST00000513841 NINLQ9Y2I6 1382 aa16.13■□□□□ 0.17
ARHGEF28-213ENST00000513841 EIF4G2P78344 907 aaKnown RBP eCLIP16.12■□□□□ 0.17
ARHGEF28-213ENST00000513841 PHRF1Q9P1Y6 1649 aaKnown RBP16.12■□□□□ 0.17
ARHGEF28-213ENST00000513841 COG3Q96JB2 828 aa16.11■□□□□ 0.17
ARHGEF28-213ENST00000513841 NRAPQ86VF7 1730 aa16.11■□□□□ 0.17
ARHGEF28-213ENST00000513841 EDC4Q6P2E9 1401 aaKnown RBP16.11■□□□□ 0.17
ARHGEF28-213ENST00000513841 SLIT3O75094 1523 aa16.1■□□□□ 0.17
ARHGEF28-213ENST00000513841 POLR3GLQ9BT43 218 aa16.1■□□□□ 0.17
ARHGEF28-213ENST00000513841 NRKQ7Z2Y5 1582 aa16.09■□□□□ 0.17
ARHGEF28-213ENST00000513841 AKAP12Q02952 1782 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms