RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 TAF4BQ92750 862 aa13.28□□□□□ -0.28
LIMCH1-217ENST00000512946 RBM28Q9NW13 759 aaKnown RBP13.28□□□□□ -0.28
LIMCH1-217ENST00000512946 GOLGA6L9A6NEM1 432 aa13.28□□□□□ -0.28
LIMCH1-217ENST00000512946 GPATCH11Q8N954 259 aa13.28□□□□□ -0.28
LIMCH1-217ENST00000512946 SART3Q15020 963 aaKnown RBP13.28□□□□□ -0.28
LIMCH1-217ENST00000512946 CCDC175P0C221 793 aa13.28□□□□□ -0.28
LIMCH1-217ENST00000512946 PAIP2Q9BPZ3 127 aaKnown RBP13.28□□□□□ -0.28
LIMCH1-217ENST00000512946 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.28□□□□□ -0.28
LIMCH1-217ENST00000512946 V9GYY5 206 aaPredicted RBP13.28□□□□□ -0.28
LIMCH1-217ENST00000512946 GCOM1H8Y6P7 765 aaPredicted RBP13.27□□□□□ -0.28
LIMCH1-217ENST00000512946 MYZAPP0CAP1 466 aa13.27□□□□□ -0.28
LIMCH1-217ENST00000512946 STK38Q15208 465 aa13.27□□□□□ -0.28
LIMCH1-217ENST00000512946 CCAR1Q8IX12 1150 aaKnown RBP13.27□□□□□ -0.28
LIMCH1-217ENST00000512946 TUBB4AP04350 444 aa13.27□□□□□ -0.29
LIMCH1-217ENST00000512946 C6orf163Q5TEZ5 329 aa13.27□□□□□ -0.29
LIMCH1-217ENST00000512946 ARHGAP29Q52LW3 1261 aa13.27□□□□□ -0.29
LIMCH1-217ENST00000512946 CNTROBQ8N137 903 aa13.27□□□□□ -0.29
LIMCH1-217ENST00000512946 HMGB1P09429 215 aaKnown RBP13.27□□□□□ -0.29
LIMCH1-217ENST00000512946 CETN2P41208 172 aa13.27□□□□□ -0.29
LIMCH1-217ENST00000512946 MNAT1P51948 309 aa13.27□□□□□ -0.29
LIMCH1-217ENST00000512946 CFAP45Q9UL16 551 aa13.26□□□□□ -0.29
LIMCH1-217ENST00000512946 SCRIBQ14160 1630 aa13.26□□□□□ -0.29
LIMCH1-217ENST00000512946 TUBB4BP68371 445 aa13.26□□□□□ -0.29
LIMCH1-217ENST00000512946 GCC1Q96CN9 775 aa13.26□□□□□ -0.29
LIMCH1-217ENST00000512946 EPB41L2O43491 1005 aaKnown RBP13.26□□□□□ -0.29
LIMCH1-217ENST00000512946 C9orf78Q9NZ63 289 aaPredicted RBP13.26□□□□□ -0.29
LIMCH1-217ENST00000512946 SMARCC1Q92922 1105 aaPredicted RBP13.26□□□□□ -0.29
LIMCH1-217ENST00000512946 CEP63Q96MT8 703 aa13.26□□□□□ -0.29
LIMCH1-217ENST00000512946 CTDP1Q9Y5B0 961 aaPredicted RBP13.26□□□□□ -0.29
LIMCH1-217ENST00000512946 ANKRD18BA2A2Z9 1011 aa13.25□□□□□ -0.29
LIMCH1-217ENST00000512946 K7ELQ4 463 aaPredicted RBP13.25□□□□□ -0.29
LIMCH1-217ENST00000512946 SPC24Q8NBT2 197 aa13.25□□□□□ -0.29
LIMCH1-217ENST00000512946 TICAM2Q86XR7 235 aa13.25□□□□□ -0.29
LIMCH1-217ENST00000512946 BBXQ8WY36 941 aaPredicted RBP13.25□□□□□ -0.29
LIMCH1-217ENST00000512946 ZSCAN31Q96LW9 406 aaPredicted RBP13.25□□□□□ -0.29
LIMCH1-217ENST00000512946 BACH2Q9BYV9 841 aa13.25□□□□□ -0.29
LIMCH1-217ENST00000512946 CSB-PGBD3P0DP91 1061 aa13.25□□□□□ -0.29
LIMCH1-217ENST00000512946 PDE3AQ14432 1141 aa13.25□□□□□ -0.29
LIMCH1-217ENST00000512946 WDR66Q8TBY9 1149 aa13.25□□□□□ -0.29
LIMCH1-217ENST00000512946 SEPT6Q14141 434 aa13.24□□□□□ -0.29
LIMCH1-217ENST00000512946 FAM114A1Q8IWE2 563 aa13.24□□□□□ -0.29
LIMCH1-217ENST00000512946 PLIN1O60240 522 aa13.24□□□□□ -0.29
LIMCH1-217ENST00000512946 CBX1P83916 185 aa13.24□□□□□ -0.29
LIMCH1-217ENST00000512946 IPO4Q8TEX9 1081 aaKnown RBP13.24□□□□□ -0.29
LIMCH1-217ENST00000512946 LRRFIP2Q9Y608 721 aaKnown RBP13.24□□□□□ -0.29
LIMCH1-217ENST00000512946 CAVIN2O95810 425 aa13.24□□□□□ -0.29
LIMCH1-217ENST00000512946 GNAI1P63096 354 aa13.24□□□□□ -0.29
LIMCH1-217ENST00000512946 SKIDA1Q1XH10 827 aa13.24□□□□□ -0.29
LIMCH1-217ENST00000512946 DAAM2Q86T65 1068 aa13.24□□□□□ -0.29
LIMCH1-217ENST00000512946 PAXBP1Q9Y5B6 917 aa13.24□□□□□ -0.29
LIMCH1-217ENST00000512946 SFPQP23246 707 aaKnown RBP eCLIP13.23□□□□□ -0.29
LIMCH1-217ENST00000512946 KRT222Q8N1A0 295 aa13.23□□□□□ -0.29
LIMCH1-217ENST00000512946 L3MBTL2Q969R5 705 aa13.23□□□□□ -0.29
LIMCH1-217ENST00000512946 DESP17661 470 aa13.23□□□□□ -0.29
LIMCH1-217ENST00000512946 NUP62CLQ9H1M0 184 aa13.23□□□□□ -0.29
LIMCH1-217ENST00000512946 NEK4P51957 841 aa13.23□□□□□ -0.29
LIMCH1-217ENST00000512946 FBXO3Q9UK99 471 aa13.23□□□□□ -0.29
LIMCH1-217ENST00000512946 KIF5CO60282 957 aa13.23□□□□□ -0.29
LIMCH1-217ENST00000512946 GSDMDP57764 484 aa13.23□□□□□ -0.29
LIMCH1-217ENST00000512946 TRIM34Q9BYJ4 488 aa13.23□□□□□ -0.29
LIMCH1-217ENST00000512946 UACAQ9BZF9 1416 aa13.23□□□□□ -0.29
LIMCH1-217ENST00000512946 STAC3Q96MF2 364 aa13.22□□□□□ -0.29
LIMCH1-217ENST00000512946 NAA15Q9BXJ9 866 aaKnown RBP13.22□□□□□ -0.29
LIMCH1-217ENST00000512946 HSPA4P34932 840 aa13.22□□□□□ -0.29
LIMCH1-217ENST00000512946 UPF3BQ9BZI7 483 aaKnown RBP13.22□□□□□ -0.29
LIMCH1-217ENST00000512946 ZNF330Q9Y3S2 320 aaPredicted RBP13.22□□□□□ -0.29
LIMCH1-217ENST00000512946 SOX12O15370 315 aa13.22□□□□□ -0.29
LIMCH1-217ENST00000512946 ERC1Q8IUD2 1116 aa13.22□□□□□ -0.29
LIMCH1-217ENST00000512946 DDX12PQ92771 950 aa13.22□□□□□ -0.29
LIMCH1-217ENST00000512946 NUP155O75694 1391 aa13.22□□□□□ -0.29
LIMCH1-217ENST00000512946 FIBPO43427 364 aa13.21□□□□□ -0.29
LIMCH1-217ENST00000512946 GTF2E1P29083 439 aaPredicted RBP13.21□□□□□ -0.29
LIMCH1-217ENST00000512946 FBXW7Q969H0 707 aa13.21□□□□□ -0.29
LIMCH1-217ENST00000512946 CDK5RAP3Q96JB5 506 aa13.21□□□□□ -0.29
LIMCH1-217ENST00000512946 FMNL2Q96PY5 1086 aa13.21□□□□□ -0.29
LIMCH1-217ENST00000512946 LNPKQ9C0E8 428 aa13.21□□□□□ -0.29
LIMCH1-217ENST00000512946 PPP6R1Q9UPN7 881 aa13.21□□□□□ -0.29
LIMCH1-217ENST00000512946 RUNDC1Q96C34 613 aa13.21□□□□□ -0.29
LIMCH1-217ENST00000512946 GNAI3P08754 354 aa13.21□□□□□ -0.3
LIMCH1-217ENST00000512946 AMPHP49418 695 aa13.21□□□□□ -0.3
LIMCH1-217ENST00000512946 ZNF397Q8NF99 534 aaPredicted RBP13.21□□□□□ -0.3
LIMCH1-217ENST00000512946 CPSF2Q9P2I0 782 aaKnown RBP13.21□□□□□ -0.3
LIMCH1-217ENST00000512946 PAFAH1B1P43034 410 aa13.2□□□□□ -0.3
LIMCH1-217ENST00000512946 FAM193AP78312 1265 aa13.2□□□□□ -0.3
LIMCH1-217ENST00000512946 RNF187Q5TA31 235 aaPredicted RBP13.2□□□□□ -0.3
LIMCH1-217ENST00000512946 TDO2P48775 406 aa13.2□□□□□ -0.3
LIMCH1-217ENST00000512946 MAP3K11Q16584 847 aa13.2□□□□□ -0.3
LIMCH1-217ENST00000512946 UVSSAQ2YD98 709 aa13.2□□□□□ -0.3
LIMCH1-217ENST00000512946 TMCO5BA8MYB1 307 aa13.2□□□□□ -0.3
LIMCH1-217ENST00000512946 GTF2F1P35269 517 aaKnown RBP eCLIP13.2□□□□□ -0.3
LIMCH1-217ENST00000512946 TUBBP07437 444 aa13.19□□□□□ -0.3
LIMCH1-217ENST00000512946 CTAGE5O15320 804 aa13.19□□□□□ -0.3
LIMCH1-217ENST00000512946 DDX46Q7L014 1031 aaKnown RBP13.19□□□□□ -0.3
LIMCH1-217ENST00000512946 KRI1Q8N9T8 703 aaKnown RBP13.19□□□□□ -0.3
LIMCH1-217ENST00000512946 TAOK3Q9H2K8 898 aa13.19□□□□□ -0.3
LIMCH1-217ENST00000512946 SWAP70Q9UH65 585 aa13.19□□□□□ -0.3
LIMCH1-217ENST00000512946 BRD4O60885 1362 aaPredicted RBP13.19□□□□□ -0.3
LIMCH1-217ENST00000512946 FYB1O15117 783 aa13.18□□□□□ -0.3
LIMCH1-217ENST00000512946 CASQ1P31415 396 aa13.18□□□□□ -0.3
LIMCH1-217ENST00000512946 CLCN1P35523 988 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms