RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 SEPT12Q8IYM1 358 aa16.21■□□□□ 0.19
LIMCH1-214ENST00000512228 ACEP12821 1306 aa16.2■□□□□ 0.18
LIMCH1-214ENST00000512228 NWD2Q9ULI1 1742 aa16.2■□□□□ 0.18
LIMCH1-214ENST00000512228 BTG4Q9NY30 223 aa16.2■□□□□ 0.18
LIMCH1-214ENST00000512228 CABP2Q9NPB3 220 aa16.19■□□□□ 0.18
LIMCH1-214ENST00000512228 CCDC61Q9Y6R9 512 aa16.19■□□□□ 0.18
LIMCH1-214ENST00000512228 NRAPQ86VF7 1730 aa16.19■□□□□ 0.18
LIMCH1-214ENST00000512228 EIF3AQ14152 1382 aaKnown RBP16.18■□□□□ 0.18
LIMCH1-214ENST00000512228 PLEKHG3A1L390 1219 aa16.18■□□□□ 0.18
LIMCH1-214ENST00000512228 CCDC9Q9Y3X0 531 aaKnown RBP16.18■□□□□ 0.18
LIMCH1-214ENST00000512228 TOPAZ1Q8N9V7 1692 aa16.18■□□□□ 0.18
LIMCH1-214ENST00000512228 POLR3AO14802 1390 aaPredicted RBP16.17■□□□□ 0.18
LIMCH1-214ENST00000512228 CHRNA2Q15822 529 aa16.17■□□□□ 0.18
LIMCH1-214ENST00000512228 ITSN1Q15811 1721 aa16.16■□□□□ 0.18
LIMCH1-214ENST00000512228 ZC3H6P61129 1189 aaKnown RBP16.15■□□□□ 0.18
LIMCH1-214ENST00000512228 FAM98CQ17RN3 349 aaKnown RBP16.15■□□□□ 0.18
LIMCH1-214ENST00000512228 FAM182BQ5T319 152 aa16.15■□□□□ 0.18
LIMCH1-214ENST00000512228 DEFB132Q7Z7B7 95 aa16.15■□□□□ 0.18
LIMCH1-214ENST00000512228 COL14A1Q05707 1796 aaKnown RBP16.15■□□□□ 0.18
LIMCH1-214ENST00000512228 CENPJQ9HC77 1338 aaPredicted RBP16.15■□□□□ 0.18
LIMCH1-214ENST00000512228 KIAA0232Q92628 1395 aa16.13■□□□□ 0.17
LIMCH1-214ENST00000512228 SRPK2P78362 688 aaKnown RBP16.13■□□□□ 0.17
LIMCH1-214ENST00000512228 CABP1Q9NZU7 370 aa16.13■□□□□ 0.17
LIMCH1-214ENST00000512228 SPATA31A5Q5VU36 1347 aa16.13■□□□□ 0.17
LIMCH1-214ENST00000512228 SPATA31A7Q8IWB4 1347 aa16.13■□□□□ 0.17
LIMCH1-214ENST00000512228 TRPM1Q7Z4N2 1603 aa16.12■□□□□ 0.17
LIMCH1-214ENST00000512228 QRICH2Q9H0J4 1663 aa16.12■□□□□ 0.17
LIMCH1-214ENST00000512228 PRDM11Q9NQV5 511 aa16.12■□□□□ 0.17
LIMCH1-214ENST00000512228 PHRF1Q9P1Y6 1649 aaKnown RBP16.12■□□□□ 0.17
LIMCH1-214ENST00000512228 EP400Q96L91 3159 aa16.12■□□□□ 0.17
LIMCH1-214ENST00000512228 KRT27Q7Z3Y8 459 aa16.11■□□□□ 0.17
LIMCH1-214ENST00000512228 CCDC125Q86Z20 511 aa16.11■□□□□ 0.17
LIMCH1-214ENST00000512228 ABTB2Q8N961 1025 aa16.11■□□□□ 0.17
LIMCH1-214ENST00000512228 PPIP5K1Q6PFW1 1433 aa16.11■□□□□ 0.17
LIMCH1-214ENST00000512228 STRN4Q9NRL3 753 aa16.09■□□□□ 0.17
LIMCH1-214ENST00000512228 CAMTA1Q9Y6Y1 1673 aa16.08■□□□□ 0.17
LIMCH1-214ENST00000512228 BLMP54132 1417 aaPredicted RBP16.08■□□□□ 0.16
LIMCH1-214ENST00000512228 A0A0G2JS52 829 aa16.07■□□□□ 0.16
LIMCH1-214ENST00000512228 MYT1Q01538 1121 aa16.07■□□□□ 0.16
LIMCH1-214ENST00000512228 SPATA31A1Q5TZJ5 1347 aa16.07■□□□□ 0.16
LIMCH1-214ENST00000512228 USP19O94966 1318 aa16.06■□□□□ 0.16
LIMCH1-214ENST00000512228 GCP02774 474 aa16.06■□□□□ 0.16
LIMCH1-214ENST00000512228 LARP1Q6PKG0 1096 aaKnown RBP16.06■□□□□ 0.16
LIMCH1-214ENST00000512228 USP35Q9P2H5 1018 aa16.06■□□□□ 0.16
LIMCH1-214ENST00000512228 NRKQ7Z2Y5 1582 aa16.05■□□□□ 0.16
LIMCH1-214ENST00000512228 SSH2Q76I76 1423 aa16.05■□□□□ 0.16
LIMCH1-214ENST00000512228 THSD7AQ9UPZ6 1657 aa16.05■□□□□ 0.16
LIMCH1-214ENST00000512228 ROCK2O75116 1388 aaKnown RBP16.04■□□□□ 0.16
LIMCH1-214ENST00000512228 ZRANB1Q9UGI0 708 aa16.04■□□□□ 0.16
LIMCH1-214ENST00000512228 USP6P35125 1406 aa16.03■□□□□ 0.16
LIMCH1-214ENST00000512228 LMO7Q8WWI1 1683 aa16.03■□□□□ 0.16
LIMCH1-214ENST00000512228 NLRP13Q86W25 1043 aa16.03■□□□□ 0.16
LIMCH1-214ENST00000512228 EVC2Q86UK5 1308 aa16.02■□□□□ 0.16
LIMCH1-214ENST00000512228 EVA1CP58658 441 aa16.02■□□□□ 0.16
LIMCH1-214ENST00000512228 NLRP6P59044 892 aa16.02■□□□□ 0.16
LIMCH1-214ENST00000512228 CPDO75976 1380 aa16.01■□□□□ 0.15
LIMCH1-214ENST00000512228 AXIN2Q9Y2T1 843 aa16.01■□□□□ 0.15
LIMCH1-214ENST00000512228 PIK3C2AO00443 1686 aa16■□□□□ 0.15
LIMCH1-214ENST00000512228 EN1Q05925 392 aaPredicted RBP16■□□□□ 0.15
LIMCH1-214ENST00000512228 COL18A1P39060 1754 aa16■□□□□ 0.15
LIMCH1-214ENST00000512228 ZBTB7CA1YPR0 619 aa15.99■□□□□ 0.15
LIMCH1-214ENST00000512228 TTC21BQ7Z4L5 1316 aa15.98■□□□□ 0.15
LIMCH1-214ENST00000512228 AKAP12Q02952 1782 aa15.98■□□□□ 0.15
LIMCH1-214ENST00000512228 RGPD5Q99666 1765 aa15.98■□□□□ 0.15
LIMCH1-214ENST00000512228 SF3B2Q13435 895 aaKnown RBP15.98■□□□□ 0.15
LIMCH1-214ENST00000512228 BARGINQ6ZT62 677 aa15.98■□□□□ 0.15
LIMCH1-214ENST00000512228 CPSF1Q10570 1443 aaKnown RBP15.97■□□□□ 0.15
LIMCH1-214ENST00000512228 TRIM37O94972 964 aa15.97■□□□□ 0.15
LIMCH1-214ENST00000512228 CARD11Q9BXL7 1154 aa15.97■□□□□ 0.15
LIMCH1-214ENST00000512228 SLIT3O75094 1523 aa15.96■□□□□ 0.15
LIMCH1-214ENST00000512228 PSDA5PKW4 1024 aaPredicted RBP15.96■□□□□ 0.15
LIMCH1-214ENST00000512228 TCP11L2Q8N4U5 519 aa15.96■□□□□ 0.15
LIMCH1-214ENST00000512228 SLC12A5Q9H2X9 1139 aa15.96■□□□□ 0.15
LIMCH1-214ENST00000512228 COL5A2P05997 1499 aaPredicted RBP15.96■□□□□ 0.14
LIMCH1-214ENST00000512228 TNS1Q9HBL0 1735 aaKnown RBP15.95■□□□□ 0.14
LIMCH1-214ENST00000512228 SOX12O15370 315 aa15.95■□□□□ 0.14
LIMCH1-214ENST00000512228 EZH2Q15910 746 aaKnown RBP15.95■□□□□ 0.14
LIMCH1-214ENST00000512228 ZNF692Q9BU19 519 aaPredicted RBP15.95■□□□□ 0.14
LIMCH1-214ENST00000512228 BRD4O60885 1362 aaPredicted RBP15.95■□□□□ 0.14
LIMCH1-214ENST00000512228 ARHGEF25Q86VW2 580 aa15.94■□□□□ 0.14
LIMCH1-214ENST00000512228 CD163L1Q9NR16 1453 aa15.94■□□□□ 0.14
LIMCH1-214ENST00000512228 AATKQ6ZMQ8 1374 aa15.93■□□□□ 0.14
LIMCH1-214ENST00000512228 BAG6P46379 1132 aa15.93■□□□□ 0.14
LIMCH1-214ENST00000512228 TRIM26Q12899 539 aaPredicted RBP15.93■□□□□ 0.14
LIMCH1-214ENST00000512228 FAM196AQ6ZSG2 479 aa15.93■□□□□ 0.14
LIMCH1-214ENST00000512228 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.93■□□□□ 0.14
LIMCH1-214ENST00000512228 CAMKK2Q96RR4 588 aa15.93■□□□□ 0.14
LIMCH1-214ENST00000512228 RGPD1P0DJD0 1748 aa15.93■□□□□ 0.14
LIMCH1-214ENST00000512228 PTF1AQ7RTS3 328 aa15.92■□□□□ 0.14
LIMCH1-214ENST00000512228 KTN1Q86UP2 1357 aaKnown RBP15.91■□□□□ 0.14
LIMCH1-214ENST00000512228 PDE3BQ13370 1112 aa15.91■□□□□ 0.14
LIMCH1-214ENST00000512228 NME9Q86XW9 330 aa15.91■□□□□ 0.14
LIMCH1-214ENST00000512228 TESK2Q96S53 571 aa15.91■□□□□ 0.14
LIMCH1-214ENST00000512228 MON2Q7Z3U7 1717 aa15.91■□□□□ 0.14
LIMCH1-214ENST00000512228 TONSLQ96HA7 1378 aa15.9■□□□□ 0.14
LIMCH1-214ENST00000512228 TMC1Q8TDI8 760 aa15.9■□□□□ 0.14
LIMCH1-214ENST00000512228 CRB1P82279 1406 aa15.9■□□□□ 0.14
LIMCH1-214ENST00000512228 SBNO2Q9Y2G9 1366 aa15.89■□□□□ 0.13
LIMCH1-214ENST00000512228 ST20-MTHFSA0A0A6YYL1 179 aa15.89■□□□□ 0.13
LIMCH1-214ENST00000512228 APBA3O96018 575 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms