RNA–Protein interactions for RNA: ENST00000509601.1

TPM3-220, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 543 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-220ENST00000509601 ABCA3Q99758 1704 aa25.7■■□□□ 1.7
TPM3-220ENST00000509601 ROCK2O75116 1388 aaKnown RBP25.69■■□□□ 1.7
TPM3-220ENST00000509601 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.69■■□□□ 1.7
TPM3-220ENST00000509601 VPS72Q15906 364 aa25.69■■□□□ 1.7
TPM3-220ENST00000509601 RALGAPBQ86X10 1494 aa25.68■■□□□ 1.7
TPM3-220ENST00000509601 TOPAZ1Q8N9V7 1692 aa25.68■■□□□ 1.7
TPM3-220ENST00000509601 CABP1Q9NZU7 370 aa25.66■■□□□ 1.7
TPM3-220ENST00000509601 GLI3P10071 1580 aa25.65■■□□□ 1.7
TPM3-220ENST00000509601 NUTM2GQ5VZR2 741 aa25.65■■□□□ 1.7
TPM3-220ENST00000509601 BTG4Q9NY30 223 aa25.65■■□□□ 1.7
TPM3-220ENST00000509601 PPIP5K1Q6PFW1 1433 aa25.64■■□□□ 1.7
TPM3-220ENST00000509601 ONECUT3O60422 494 aaPredicted RBP25.64■■□□□ 1.7
TPM3-220ENST00000509601 QRICH2Q9H0J4 1663 aa25.64■■□□□ 1.69
TPM3-220ENST00000509601 ATAD2Q6PL18 1390 aa25.62■■□□□ 1.69
TPM3-220ENST00000509601 NWD2Q9ULI1 1742 aa25.62■■□□□ 1.69
TPM3-220ENST00000509601 EVC2Q86UK5 1308 aa25.62■■□□□ 1.69
TPM3-220ENST00000509601 PLCH1Q4KWH8 1693 aa25.61■■□□□ 1.69
TPM3-220ENST00000509601 CRYBG1Q9Y4K1 1723 aa25.61■■□□□ 1.69
TPM3-220ENST00000509601 ABTB2Q8N961 1025 aa25.61■■□□□ 1.69
TPM3-220ENST00000509601 TONSLQ96HA7 1378 aa25.59■■□□□ 1.69
TPM3-220ENST00000509601 SEPT12Q8IYM1 358 aa25.59■■□□□ 1.69
TPM3-220ENST00000509601 CCDC9Q9Y3X0 531 aaKnown RBP25.59■■□□□ 1.69
TPM3-220ENST00000509601 CARD11Q9BXL7 1154 aa25.58■■□□□ 1.69
TPM3-220ENST00000509601 PRDM11Q9NQV5 511 aa25.58■■□□□ 1.69
TPM3-220ENST00000509601 ZC3H6P61129 1189 aaKnown RBP25.57■■□□□ 1.68
TPM3-220ENST00000509601 KIAA0232Q92628 1395 aa25.56■■□□□ 1.68
TPM3-220ENST00000509601 COL14A1Q05707 1796 aaKnown RBP25.56■■□□□ 1.68
TPM3-220ENST00000509601 EP400Q96L91 3159 aa25.56■■□□□ 1.68
TPM3-220ENST00000509601 CHRNA2Q15822 529 aa25.56■■□□□ 1.68
TPM3-220ENST00000509601 BRD4O60885 1362 aaPredicted RBP25.55■■□□□ 1.68
TPM3-220ENST00000509601 NLRP13Q86W25 1043 aa25.54■■□□□ 1.68
TPM3-220ENST00000509601 NRAPQ86VF7 1730 aa25.54■■□□□ 1.68
TPM3-220ENST00000509601 USP19O94966 1318 aa25.53■■□□□ 1.68
TPM3-220ENST00000509601 SPATA31A5Q5VU36 1347 aa25.52■■□□□ 1.68
TPM3-220ENST00000509601 SPATA31A7Q8IWB4 1347 aa25.52■■□□□ 1.68
TPM3-220ENST00000509601 USP6P35125 1406 aa25.52■■□□□ 1.68
TPM3-220ENST00000509601 SSH2Q76I76 1423 aa25.52■■□□□ 1.68
TPM3-220ENST00000509601 GCP02774 474 aa25.51■■□□□ 1.67
TPM3-220ENST00000509601 FAM98CQ17RN3 349 aaKnown RBP25.51■■□□□ 1.67
TPM3-220ENST00000509601 BRWD3Q6RI45 1802 aa25.5■■□□□ 1.67
TPM3-220ENST00000509601 CCDC125Q86Z20 511 aa25.5■■□□□ 1.67
TPM3-220ENST00000509601 ZNF692Q9BU19 519 aaPredicted RBP25.5■■□□□ 1.67
TPM3-220ENST00000509601 PHRF1Q9P1Y6 1649 aaKnown RBP25.5■■□□□ 1.67
TPM3-220ENST00000509601 SBNO2Q9Y2G9 1366 aa25.49■■□□□ 1.67
TPM3-220ENST00000509601 NLRP6P59044 892 aa25.48■■□□□ 1.67
TPM3-220ENST00000509601 KRT27Q7Z3Y8 459 aa25.48■■□□□ 1.67
TPM3-220ENST00000509601 CPDO75976 1380 aa25.47■■□□□ 1.67
TPM3-220ENST00000509601 STRN4Q9NRL3 753 aa25.46■■□□□ 1.67
TPM3-220ENST00000509601 SPATA31A1Q5TZJ5 1347 aa25.45■■□□□ 1.66
TPM3-220ENST00000509601 TTC21BQ7Z4L5 1316 aa25.45■■□□□ 1.66
TPM3-220ENST00000509601 CPSF1Q10570 1443 aaKnown RBP25.44■■□□□ 1.66
TPM3-220ENST00000509601 NRKQ7Z2Y5 1582 aa25.44■■□□□ 1.66
TPM3-220ENST00000509601 CAMTA1Q9Y6Y1 1673 aa25.42■■□□□ 1.66
TPM3-220ENST00000509601 EVA1CP58658 441 aa25.42■■□□□ 1.66
TPM3-220ENST00000509601 A0A0G2JS52 829 aa25.41■■□□□ 1.66
TPM3-220ENST00000509601 MYT1Q01538 1121 aa25.41■■□□□ 1.66
TPM3-220ENST00000509601 TESK2Q96S53 571 aa25.4■■□□□ 1.66
TPM3-220ENST00000509601 ST20-MTHFSA0A0A6YYL1 179 aa25.39■■□□□ 1.66
TPM3-220ENST00000509601 LARP1Q6PKG0 1096 aaKnown RBP25.39■■□□□ 1.66
TPM3-220ENST00000509601 SLC12A5Q9H2X9 1139 aa25.39■■□□□ 1.66
TPM3-220ENST00000509601 BLMP54132 1417 aaPredicted RBP25.38■■□□□ 1.65
TPM3-220ENST00000509601 PUS7Q96PZ0 661 aaKnown RBP25.38■■□□□ 1.65
TPM3-220ENST00000509601 KTN1Q86UP2 1357 aaKnown RBP25.38■■□□□ 1.65
TPM3-220ENST00000509601 TTC21AQ8NDW8 1320 aa25.37■■□□□ 1.65
TPM3-220ENST00000509601 AKAP12Q02952 1782 aa25.37■■□□□ 1.65
TPM3-220ENST00000509601 SLIT3O75094 1523 aa25.37■■□□□ 1.65
TPM3-220ENST00000509601 PIK3C2AO00443 1686 aa25.36■■□□□ 1.65
TPM3-220ENST00000509601 LMO7Q8WWI1 1683 aa25.36■■□□□ 1.65
TPM3-220ENST00000509601 TMC1Q8TDI8 760 aa25.36■■□□□ 1.65
TPM3-220ENST00000509601 USP35Q9P2H5 1018 aa25.36■■□□□ 1.65
TPM3-220ENST00000509601 CD163L1Q9NR16 1453 aa25.35■■□□□ 1.65
TPM3-220ENST00000509601 FAM182BQ5T319 152 aa25.35■■□□□ 1.65
TPM3-220ENST00000509601 BARGINQ6ZT62 677 aa25.35■■□□□ 1.65
TPM3-220ENST00000509601 DEFB132Q7Z7B7 95 aa25.35■■□□□ 1.65
TPM3-220ENST00000509601 PCGF6Q9BYE7 350 aa25.35■■□□□ 1.65
TPM3-220ENST00000509601 AATKQ6ZMQ8 1374 aa25.34■■□□□ 1.65
TPM3-220ENST00000509601 ZBTB7CA1YPR0 619 aa25.34■■□□□ 1.65
TPM3-220ENST00000509601 ZRANB1Q9UGI0 708 aa25.34■■□□□ 1.65
TPM3-220ENST00000509601 AXIN2Q9Y2T1 843 aa25.34■■□□□ 1.65
TPM3-220ENST00000509601 THSD7AQ9UPZ6 1657 aa25.33■■□□□ 1.65
TPM3-220ENST00000509601 ARHGEF25Q86VW2 580 aa25.33■■□□□ 1.65
TPM3-220ENST00000509601 TCP11L2Q8N4U5 519 aa25.32■■□□□ 1.64
TPM3-220ENST00000509601 KCNH5Q8NCM2 988 aa25.32■■□□□ 1.64
TPM3-220ENST00000509601 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.31■■□□□ 1.64
TPM3-220ENST00000509601 TIMELESSQ9UNS1 1208 aa25.31■■□□□ 1.64
TPM3-220ENST00000509601 COL5A2P05997 1499 aaPredicted RBP25.3■■□□□ 1.64
TPM3-220ENST00000509601 SF3B2Q13435 895 aaKnown RBP25.29■■□□□ 1.64
TPM3-220ENST00000509601 HDGFL2Q7Z4V5 671 aaPredicted RBP25.29■■□□□ 1.64
TPM3-220ENST00000509601 THRAP3Q9Y2W1 955 aaKnown RBP25.29■■□□□ 1.64
TPM3-220ENST00000509601 USP31Q70CQ4 1352 aa25.29■■□□□ 1.64
TPM3-220ENST00000509601 COL18A1P39060 1754 aa25.28■■□□□ 1.64
TPM3-220ENST00000509601 SOX12O15370 315 aa25.28■■□□□ 1.64
TPM3-220ENST00000509601 SLC24A1O60721 1099 aa25.28■■□□□ 1.64
TPM3-220ENST00000509601 NME9Q86XW9 330 aa25.28■■□□□ 1.64
TPM3-220ENST00000509601 CLSPNQ9HAW4 1339 aa25.28■■□□□ 1.64
TPM3-220ENST00000509601 MON2Q7Z3U7 1717 aa25.27■■□□□ 1.64
TPM3-220ENST00000509601 TERF2IPQ9NYB0 399 aa25.26■■□□□ 1.63
TPM3-220ENST00000509601 CRB1P82279 1406 aa25.24■■□□□ 1.63
TPM3-220ENST00000509601 A0A1W2PP64 1363 aa25.24■■□□□ 1.63
TPM3-220ENST00000509601 PDE3BQ13370 1112 aa25.23■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 148.3 ms