RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 ALS2Q96Q42 1657 aa30.59■■■□□ 2.49
SQSTM1-210ENST00000506042 BAG6P46379 1132 aa30.59■■■□□ 2.49
SQSTM1-210ENST00000506042 PRDM11Q9NQV5 511 aa30.56■■■□□ 2.48
SQSTM1-210ENST00000506042 ARHGEF28Q8N1W1 1705 aaKnown RBP30.54■■■□□ 2.48
SQSTM1-210ENST00000506042 NRAPQ86VF7 1730 aa30.53■■■□□ 2.48
SQSTM1-210ENST00000506042 EP400Q96L91 3159 aa30.53■■■□□ 2.48
SQSTM1-210ENST00000506042 ATP7BP35670 1465 aa30.53■■■□□ 2.48
SQSTM1-210ENST00000506042 FAM98CQ17RN3 349 aaKnown RBP30.53■■■□□ 2.48
SQSTM1-210ENST00000506042 PRR36Q9H6K5 1346 aa30.52■■■□□ 2.48
SQSTM1-210ENST00000506042 NUDT16Q96DE0 195 aaKnown RBP30.51■■■□□ 2.47
SQSTM1-210ENST00000506042 DEFB132Q7Z7B7 95 aa30.49■■■□□ 2.47
SQSTM1-210ENST00000506042 KIAA1210Q9ULL0 1709 aa30.48■■■□□ 2.47
SQSTM1-210ENST00000506042 SPATA31A5Q5VU36 1347 aa30.46■■■□□ 2.47
SQSTM1-210ENST00000506042 SPATA31A7Q8IWB4 1347 aa30.46■■■□□ 2.47
SQSTM1-210ENST00000506042 RGPD1P0DJD0 1748 aa30.45■■■□□ 2.47
SQSTM1-210ENST00000506042 CCDC61Q9Y6R9 512 aa30.45■■■□□ 2.47
SQSTM1-210ENST00000506042 CDK19Q9BWU1 502 aa30.44■■■□□ 2.46
SQSTM1-210ENST00000506042 CRYBG1Q9Y4K1 1723 aa30.42■■■□□ 2.46
SQSTM1-210ENST00000506042 EVA1CP58658 441 aa30.4■■■□□ 2.46
SQSTM1-210ENST00000506042 KIAA0232Q92628 1395 aa30.4■■■□□ 2.46
SQSTM1-210ENST00000506042 POLR3AO14802 1390 aaPredicted RBP30.39■■■□□ 2.45
SQSTM1-210ENST00000506042 PHRF1Q9P1Y6 1649 aaKnown RBP30.38■■■□□ 2.45
SQSTM1-210ENST00000506042 STRN4Q9NRL3 753 aa30.37■■■□□ 2.45
SQSTM1-210ENST00000506042 ACEP12821 1306 aa30.37■■■□□ 2.45
SQSTM1-210ENST00000506042 SRPK2P78362 688 aaKnown RBP30.36■■■□□ 2.45
SQSTM1-210ENST00000506042 ABTB2Q8N961 1025 aa30.36■■■□□ 2.45
SQSTM1-210ENST00000506042 TOPAZ1Q8N9V7 1692 aa30.36■■■□□ 2.45
SQSTM1-210ENST00000506042 NBPF8Q3BBV2 869 aa30.35■■■□□ 2.45
SQSTM1-210ENST00000506042 FAM196AQ6ZSG2 479 aa30.35■■■□□ 2.45
SQSTM1-210ENST00000506042 SPATA31A1Q5TZJ5 1347 aa30.35■■■□□ 2.45
SQSTM1-210ENST00000506042 BRD4O60885 1362 aaPredicted RBP30.35■■■□□ 2.45
SQSTM1-210ENST00000506042 THSD7AQ9UPZ6 1657 aa30.34■■■□□ 2.45
SQSTM1-210ENST00000506042 LRP5O75197 1615 aa30.34■■■□□ 2.45
SQSTM1-210ENST00000506042 PLEKHG3A1L390 1219 aa30.34■■■□□ 2.45
SQSTM1-210ENST00000506042 NLRP13Q86W25 1043 aa30.34■■■□□ 2.45
SQSTM1-210ENST00000506042 ZC3H6P61129 1189 aaKnown RBP30.33■■■□□ 2.45
SQSTM1-210ENST00000506042 CENPJQ9HC77 1338 aaPredicted RBP30.32■■■□□ 2.44
SQSTM1-210ENST00000506042 PDE3BQ13370 1112 aa30.31■■■□□ 2.44
SQSTM1-210ENST00000506042 CHRNA2Q15822 529 aa30.31■■■□□ 2.44
SQSTM1-210ENST00000506042 C11orf95C9JLR9 678 aaPredicted RBP30.29■■■□□ 2.44
SQSTM1-210ENST00000506042 NUTM2GQ5VZR2 741 aa30.29■■■□□ 2.44
SQSTM1-210ENST00000506042 DISP2A7MBM2 1401 aa30.29■■■□□ 2.44
SQSTM1-210ENST00000506042 PARD3Q8TEW0 1356 aa30.28■■■□□ 2.44
SQSTM1-210ENST00000506042 EN1Q05925 392 aaPredicted RBP30.27■■■□□ 2.44
SQSTM1-210ENST00000506042 BARGINQ6ZT62 677 aa30.27■■■□□ 2.44
SQSTM1-210ENST00000506042 PPIP5K1Q6PFW1 1433 aa30.27■■■□□ 2.44
SQSTM1-210ENST00000506042 CPDO75976 1380 aa30.27■■■□□ 2.44
SQSTM1-210ENST00000506042 USP35Q9P2H5 1018 aa30.26■■■□□ 2.43
SQSTM1-210ENST00000506042 THRAP3Q9Y2W1 955 aaKnown RBP30.26■■■□□ 2.43
SQSTM1-210ENST00000506042 SSH2Q76I76 1423 aa30.25■■■□□ 2.43
SQSTM1-210ENST00000506042 NRKQ7Z2Y5 1582 aa30.24■■■□□ 2.43
SQSTM1-210ENST00000506042 PSDA5PKW4 1024 aaPredicted RBP30.23■■■□□ 2.43
SQSTM1-210ENST00000506042 FAM182BQ5T319 152 aa30.22■■■□□ 2.43
SQSTM1-210ENST00000506042 TCP11L2Q8N4U5 519 aa30.22■■■□□ 2.43
SQSTM1-210ENST00000506042 TNS1Q9HBL0 1735 aaKnown RBP30.21■■■□□ 2.43
SQSTM1-210ENST00000506042 USP19O94966 1318 aa30.21■■■□□ 2.43
SQSTM1-210ENST00000506042 QRICH2Q9H0J4 1663 aa30.2■■■□□ 2.43
SQSTM1-210ENST00000506042 TRIM37O94972 964 aa30.19■■■□□ 2.42
SQSTM1-210ENST00000506042 NBPF1Q3BBV0 1214 aa30.19■■■□□ 2.42
SQSTM1-210ENST00000506042 EVC2Q86UK5 1308 aa30.19■■■□□ 2.42
SQSTM1-210ENST00000506042 APBA3O96018 575 aa30.18■■■□□ 2.42
SQSTM1-210ENST00000506042 GCP02774 474 aa30.18■■■□□ 2.42
SQSTM1-210ENST00000506042 NBPF14Q5TI25 921 aa30.16■■■□□ 2.42
SQSTM1-210ENST00000506042 CABP2Q9NPB3 220 aa30.16■■■□□ 2.42
SQSTM1-210ENST00000506042 SRCAPQ6ZRS2 3230 aa30.15■■■□□ 2.42
SQSTM1-210ENST00000506042 NLRP6P59044 892 aa30.15■■■□□ 2.42
SQSTM1-210ENST00000506042 R3HDM1Q15032 1099 aaKnown RBP30.15■■■□□ 2.42
SQSTM1-210ENST00000506042 LARP1Q6PKG0 1096 aaKnown RBP30.14■■■□□ 2.42
SQSTM1-210ENST00000506042 LMO7Q8WWI1 1683 aa30.14■■■□□ 2.41
SQSTM1-210ENST00000506042 CAMTA1Q9Y6Y1 1673 aa30.14■■■□□ 2.41
SQSTM1-210ENST00000506042 EZH2Q15910 746 aaKnown RBP30.13■■■□□ 2.41
SQSTM1-210ENST00000506042 USP6P35125 1406 aa30.13■■■□□ 2.41
SQSTM1-210ENST00000506042 ZBTB7CA1YPR0 619 aa30.12■■■□□ 2.41
SQSTM1-210ENST00000506042 CRB1P82279 1406 aa30.12■■■□□ 2.41
SQSTM1-210ENST00000506042 ZNF692Q9BU19 519 aaPredicted RBP30.11■■■□□ 2.41
SQSTM1-210ENST00000506042 CABP1Q9NZU7 370 aa30.1■■■□□ 2.41
SQSTM1-210ENST00000506042 COL5A2P05997 1499 aaPredicted RBP30.09■■■□□ 2.41
SQSTM1-210ENST00000506042 CAMKK2Q96RR4 588 aa30.09■■■□□ 2.41
SQSTM1-210ENST00000506042 AATKQ6ZMQ8 1374 aa30.08■■■□□ 2.41
SQSTM1-210ENST00000506042 KCNH5Q8NCM2 988 aa30.08■■■□□ 2.41
SQSTM1-210ENST00000506042 PARP4Q9UKK3 1724 aaKnown RBP30.08■■■□□ 2.41
SQSTM1-210ENST00000506042 TRPM1Q7Z4N2 1603 aa30.07■■■□□ 2.4
SQSTM1-210ENST00000506042 ROCK2O75116 1388 aaKnown RBP30.06■■■□□ 2.4
SQSTM1-210ENST00000506042 CDCA7Q9BWT1 371 aaPredicted RBP30.06■■■□□ 2.4
SQSTM1-210ENST00000506042 OVOS2A0A0G2JMS6 1433 aa30.05■■■□□ 2.4
SQSTM1-210ENST00000506042 OVOS2A0A0J9YW53 1432 aa30.05■■■□□ 2.4
SQSTM1-210ENST00000506042 OVOS2Q6IE36 1432 aa30.05■■■□□ 2.4
SQSTM1-210ENST00000506042 TOM1L2Q6ZVM7 507 aa30.05■■■□□ 2.4
SQSTM1-210ENST00000506042 L3MBTL2Q969R5 705 aa30.05■■■□□ 2.4
SQSTM1-210ENST00000506042 SLIT3O75094 1523 aa30.03■■■□□ 2.4
SQSTM1-210ENST00000506042 TTC21AQ8NDW8 1320 aa30.02■■■□□ 2.4
SQSTM1-210ENST00000506042 DDB1Q16531 1140 aa30.02■■■□□ 2.4
SQSTM1-210ENST00000506042 RREB1Q92766 1687 aa30.01■■■□□ 2.39
SQSTM1-210ENST00000506042 DCAF8L1A6NGE4 600 aa29.99■■■□□ 2.39
SQSTM1-210ENST00000506042 CSB-PGBD3P0DP91 1061 aa29.97■■■□□ 2.39
SQSTM1-210ENST00000506042 WDR17Q8IZU2 1322 aa29.96■■■□□ 2.39
SQSTM1-210ENST00000506042 CPSF1Q10570 1443 aaKnown RBP29.96■■■□□ 2.39
SQSTM1-210ENST00000506042 PIK3C2AO00443 1686 aa29.95■■■□□ 2.39
SQSTM1-210ENST00000506042 NEUROD1Q13562 356 aa29.95■■■□□ 2.39
SQSTM1-210ENST00000506042 PPP1R1BQ9UD71 204 aaPredicted RBP29.95■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms