RNA–Protein interactions for RNA: ENST00000505615.1

VCAN-206, Transcript of versican, humanhuman

TSL 5

Gene VCAN, Length 810 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-206ENST00000505615 MMRN1Q13201 1228 aa11.18□□□□□ -0.62
VCAN-206ENST00000505615 UNC13BO14795 1591 aa11.18□□□□□ -0.62
VCAN-206ENST00000505615 ATRNO75882 1429 aa11.18□□□□□ -0.62
VCAN-206ENST00000505615 PTPN23Q9H3S7 1636 aa11.17□□□□□ -0.62
VCAN-206ENST00000505615 NRXN3Q9Y4C0 1643 aa11.17□□□□□ -0.62
VCAN-206ENST00000505615 DAPK1P53355 1430 aa11.17□□□□□ -0.62
VCAN-206ENST00000505615 NALCNQ8IZF0 1738 aa11.16□□□□□ -0.62
VCAN-206ENST00000505615 PPP1R15AO75807 674 aaPredicted RBP11.16□□□□□ -0.62
VCAN-206ENST00000505615 LRRC59Q96AG4 307 aaKnown RBP11.16□□□□□ -0.62
VCAN-206ENST00000505615 NGLY1Q96IV0 654 aa11.16□□□□□ -0.62
VCAN-206ENST00000505615 DPY19L2Q6NUT2 758 aa11.15□□□□□ -0.62
VCAN-206ENST00000505615 DDX17Q92841 729 aaKnown RBP11.15□□□□□ -0.62
VCAN-206ENST00000505615 COL22A1Q8NFW1 1626 aaPredicted RBP11.14□□□□□ -0.63
VCAN-206ENST00000505615 CABP2Q9NPB3 220 aa11.14□□□□□ -0.63
VCAN-206ENST00000505615 MARF1Q9Y4F3 1742 aaKnown RBP11.14□□□□□ -0.63
VCAN-206ENST00000505615 EMP3P54852 163 aa11.13□□□□□ -0.63
VCAN-206ENST00000505615 KANK4Q5T7N3 995 aaPredicted RBP11.13□□□□□ -0.63
VCAN-206ENST00000505615 AMOTL2Q9Y2J4 779 aa11.13□□□□□ -0.63
VCAN-206ENST00000505615 BRWD3Q6RI45 1802 aa11.13□□□□□ -0.63
VCAN-206ENST00000505615 PTCH1Q13635 1447 aa11.12□□□□□ -0.63
VCAN-206ENST00000505615 ADGRL3Q9HAR2 1447 aa11.12□□□□□ -0.63
VCAN-206ENST00000505615 POTEB3A0JP26 581 aa11.12□□□□□ -0.63
VCAN-206ENST00000505615 ADAMTS2O95450 1211 aa11.12□□□□□ -0.63
VCAN-206ENST00000505615 POTEBQ6S5H4 581 aa11.12□□□□□ -0.63
VCAN-206ENST00000505615 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.12□□□□□ -0.63
VCAN-206ENST00000505615 TRPC5Q9UL62 973 aaPredicted RBP11.12□□□□□ -0.63
VCAN-206ENST00000505615 CIZ1Q9ULV3 898 aaPredicted RBP11.12□□□□□ -0.63
VCAN-206ENST00000505615 E9PCH4 1651 aa11.11□□□□□ -0.63
VCAN-206ENST00000505615 HDGFP51858 240 aaKnown RBP11.11□□□□□ -0.63
VCAN-206ENST00000505615 CCDC125Q86Z20 511 aa11.11□□□□□ -0.63
VCAN-206ENST00000505615 FNBP4Q8N3X1 1017 aaPredicted RBP11.11□□□□□ -0.63
VCAN-206ENST00000505615 USP21Q9UK80 565 aa11.11□□□□□ -0.63
VCAN-206ENST00000505615 ANKRD30AQ9BXX3 1397 aa11.11□□□□□ -0.63
VCAN-206ENST00000505615 VPS8Q8N3P4 1428 aa11.1□□□□□ -0.63
VCAN-206ENST00000505615 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.1□□□□□ -0.63
VCAN-206ENST00000505615 HS3ST6Q96QI5 342 aa11.1□□□□□ -0.63
VCAN-206ENST00000505615 BOLA1Q9Y3E2 137 aa11.1□□□□□ -0.63
VCAN-206ENST00000505615 ADGRL2O95490 1459 aa11.1□□□□□ -0.63
VCAN-206ENST00000505615 MYOM2P54296 1465 aa11.1□□□□□ -0.63
VCAN-206ENST00000505615 BCL9LQ86UU0 1499 aa11.1□□□□□ -0.63
VCAN-206ENST00000505615 C1orf167Q5SNV9 1468 aa11.09□□□□□ -0.63
VCAN-206ENST00000505615 KRTAP3-3Q9BYR6 98 aa11.09□□□□□ -0.63
VCAN-206ENST00000505615 KRTAP3-2Q9BYR7 98 aa11.09□□□□□ -0.63
VCAN-206ENST00000505615 SPHKAPQ2M3C7 1700 aa11.09□□□□□ -0.63
VCAN-206ENST00000505615 BLMP54132 1417 aaPredicted RBP11.09□□□□□ -0.63
VCAN-206ENST00000505615 GLI3P10071 1580 aa11.08□□□□□ -0.64
VCAN-206ENST00000505615 HOXB3P14651 431 aaPredicted RBP11.08□□□□□ -0.64
VCAN-206ENST00000505615 IQGAP3Q86VI3 1631 aa11.08□□□□□ -0.64
VCAN-206ENST00000505615 SOS2Q07890 1332 aaPredicted RBP11.08□□□□□ -0.64
VCAN-206ENST00000505615 CHIC2Q9UKJ5 165 aa11.07□□□□□ -0.64
VCAN-206ENST00000505615 METP08581 1390 aa11.06□□□□□ -0.64
VCAN-206ENST00000505615 CHGAP10645 457 aaKnown RBP11.06□□□□□ -0.64
VCAN-206ENST00000505615 DEFB132Q7Z7B7 95 aa11.06□□□□□ -0.64
VCAN-206ENST00000505615 ANKRD50Q9ULJ7 1429 aa11.05□□□□□ -0.64
VCAN-206ENST00000505615 FAM205CA6NFA0 338 aa11.04□□□□□ -0.64
VCAN-206ENST00000505615 RALGAPBQ86X10 1494 aa11.03□□□□□ -0.64
VCAN-206ENST00000505615 GJD4Q96KN9 370 aaPredicted RBP11.02□□□□□ -0.65
VCAN-206ENST00000505615 ORAI2Q96SN7 254 aa11.02□□□□□ -0.65
VCAN-206ENST00000505615 PXDNQ92626 1479 aa11.01□□□□□ -0.65
VCAN-206ENST00000505615 SLIT2O94813 1529 aa11.01□□□□□ -0.65
VCAN-206ENST00000505615 HRCP23327 699 aa11.01□□□□□ -0.65
VCAN-206ENST00000505615 G3V3G9 751 aa11□□□□□ -0.65
VCAN-206ENST00000505615 EFCAB3Q8N7B9 438 aa11□□□□□ -0.65
VCAN-206ENST00000505615 NEXMIFQ5QGS0 1516 aa10.99□□□□□ -0.65
VCAN-206ENST00000505615 PSDA5PKW4 1024 aaPredicted RBP10.99□□□□□ -0.65
VCAN-206ENST00000505615 HOXB1P14653 301 aaPredicted RBP10.99□□□□□ -0.65
VCAN-206ENST00000505615 PRAG1Q86YV5 1406 aa10.99□□□□□ -0.65
VCAN-206ENST00000505615 USP32Q8NFA0 1604 aa10.98□□□□□ -0.65
VCAN-206ENST00000505615 ROBO2Q9HCK4 1378 aa10.97□□□□□ -0.65
VCAN-206ENST00000505615 NWD2Q9ULI1 1742 aa10.96□□□□□ -0.65
VCAN-206ENST00000505615 PLCH1Q4KWH8 1693 aa10.96□□□□□ -0.65
VCAN-206ENST00000505615 CDC42BPGQ6DT37 1551 aa10.96□□□□□ -0.65
VCAN-206ENST00000505615 UNC5CLQ8IV45 518 aa10.96□□□□□ -0.65
VCAN-206ENST00000505615 DOK7Q18PE1 504 aa10.95□□□□□ -0.66
VCAN-206ENST00000505615 RNF25Q96BH1 459 aaPredicted RBP10.95□□□□□ -0.66
VCAN-206ENST00000505615 RGPD1P0DJD0 1748 aa10.95□□□□□ -0.66
VCAN-206ENST00000505615 ABCA3Q99758 1704 aa10.95□□□□□ -0.66
VCAN-206ENST00000505615 TNS1Q9HBL0 1735 aaKnown RBP10.95□□□□□ -0.66
VCAN-206ENST00000505615 NPHP3Q7Z494 1330 aa10.94□□□□□ -0.66
VCAN-206ENST00000505615 SF3B2Q13435 895 aaKnown RBP10.94□□□□□ -0.66
VCAN-206ENST00000505615 SEPT12Q8IYM1 358 aa10.94□□□□□ -0.66
VCAN-206ENST00000505615 CLTCL1P53675 1640 aa10.94□□□□□ -0.66
VCAN-206ENST00000505615 TMEM92Q6UXU6 159 aa10.93□□□□□ -0.66
VCAN-206ENST00000505615 MICALL2Q8IY33 904 aa10.93□□□□□ -0.66
VCAN-206ENST00000505615 ZNF710Q8N1W2 664 aa10.92□□□□□ -0.66
VCAN-206ENST00000505615 NRAPQ86VF7 1730 aa10.92□□□□□ -0.66
VCAN-206ENST00000505615 KIF1BO60333 1816 aa10.91□□□□□ -0.66
VCAN-206ENST00000505615 ONECUT3O60422 494 aaPredicted RBP10.91□□□□□ -0.66
VCAN-206ENST00000505615 YY1P25490 414 aa10.91□□□□□ -0.66
VCAN-206ENST00000505615 BAG6P46379 1132 aa10.91□□□□□ -0.66
VCAN-206ENST00000505615 XPCQ01831 940 aaPredicted RBP10.91□□□□□ -0.66
VCAN-206ENST00000505615 MS4A4AQ96JQ5 239 aa10.91□□□□□ -0.66
VCAN-206ENST00000505615 HFM1A2PYH4 1435 aa10.91□□□□□ -0.66
VCAN-206ENST00000505615 DISP2A7MBM2 1401 aa10.91□□□□□ -0.66
VCAN-206ENST00000505615 RIOK3O14730 519 aaKnown RBP10.9□□□□□ -0.66
VCAN-206ENST00000505615 VPS72Q15906 364 aa10.9□□□□□ -0.66
VCAN-206ENST00000505615 KRT27Q7Z3Y8 459 aa10.9□□□□□ -0.66
VCAN-206ENST00000505615 KIF1AQ12756 1690 aa10.89□□□□□ -0.67
VCAN-206ENST00000505615 SOX12O15370 315 aa10.89□□□□□ -0.67
VCAN-206ENST00000505615 FOXO3O43524 673 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms