RNA–Protein interactions for RNA: ENST00000505065.1

CDC42SE2-208, Transcript of CDC42 small effector 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDC42SE2, Length 4,352 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE2-208ENST00000505065 SHANK3Q9BYB0 1731 aa11.69□□□□□ -0.54
CDC42SE2-208ENST00000505065 POGKQ9P215 609 aa11.69□□□□□ -0.54
CDC42SE2-208ENST00000505065 PER1O15534 1290 aaPredicted RBP11.68□□□□□ -0.54
CDC42SE2-208ENST00000505065 PNPLA6Q8IY17 1366 aa11.68□□□□□ -0.54
CDC42SE2-208ENST00000505065 LRP6O75581 1613 aa11.68□□□□□ -0.54
CDC42SE2-208ENST00000505065 NSD2O96028 1365 aa11.68□□□□□ -0.54
CDC42SE2-208ENST00000505065 NCAPD2Q15021 1401 aa11.68□□□□□ -0.54
CDC42SE2-208ENST00000505065 FBXO41Q8TF61 875 aa11.68□□□□□ -0.54
CDC42SE2-208ENST00000505065 BCANQ96GW7 911 aa11.68□□□□□ -0.54
CDC42SE2-208ENST00000505065 CDCA8Q53HL2 280 aa11.67□□□□□ -0.54
CDC42SE2-208ENST00000505065 COL3A1P02461 1466 aaPredicted RBP11.66□□□□□ -0.54
CDC42SE2-208ENST00000505065 TTC21AQ8NDW8 1320 aa11.66□□□□□ -0.54
CDC42SE2-208ENST00000505065 TOM1O60784 492 aa11.66□□□□□ -0.54
CDC42SE2-208ENST00000505065 RGPD2P0DJD1 1756 aa11.66□□□□□ -0.54
CDC42SE2-208ENST00000505065 SPATA31A3Q5VYP0 1347 aa11.65□□□□□ -0.54
CDC42SE2-208ENST00000505065 ATF3P18847 181 aa11.65□□□□□ -0.54
CDC42SE2-208ENST00000505065 SCAF1Q9H7N4 1312 aaKnown RBP11.65□□□□□ -0.54
CDC42SE2-208ENST00000505065 RBM33Q96EV2 1170 aaKnown RBP11.65□□□□□ -0.54
CDC42SE2-208ENST00000505065 THSD7AQ9UPZ6 1657 aa11.65□□□□□ -0.54
CDC42SE2-208ENST00000505065 CPDO75976 1380 aa11.65□□□□□ -0.54
CDC42SE2-208ENST00000505065 CABP2Q9NPB3 220 aa11.65□□□□□ -0.54
CDC42SE2-208ENST00000505065 ORAI2Q96SN7 254 aa11.65□□□□□ -0.55
CDC42SE2-208ENST00000505065 PHF8Q9UPP1 1060 aa11.65□□□□□ -0.55
CDC42SE2-208ENST00000505065 PKD1L3Q7Z443 1732 aa11.64□□□□□ -0.55
CDC42SE2-208ENST00000505065 ACEP12821 1306 aa11.64□□□□□ -0.55
CDC42SE2-208ENST00000505065 CARD14Q9BXL6 1004 aa11.64□□□□□ -0.55
CDC42SE2-208ENST00000505065 PARP4Q9UKK3 1724 aaKnown RBP11.64□□□□□ -0.55
CDC42SE2-208ENST00000505065 VIRMAQ69YN4 1812 aaKnown RBP11.64□□□□□ -0.55
CDC42SE2-208ENST00000505065 NPHP3Q7Z494 1330 aa11.64□□□□□ -0.55
CDC42SE2-208ENST00000505065 ADAMTS7Q9UKP4 1686 aa11.64□□□□□ -0.55
CDC42SE2-208ENST00000505065 ZNF692Q9BU19 519 aaPredicted RBP11.64□□□□□ -0.55
CDC42SE2-208ENST00000505065 ARHGEF10O15013 1369 aa11.64□□□□□ -0.55
CDC42SE2-208ENST00000505065 INSRP06213 1382 aa11.63□□□□□ -0.55
CDC42SE2-208ENST00000505065 AATKQ6ZMQ8 1374 aa11.63□□□□□ -0.55
CDC42SE2-208ENST00000505065 SLIT2O94813 1529 aa11.62□□□□□ -0.55
CDC42SE2-208ENST00000505065 HIRIP3Q9BW71 556 aaPredicted RBP11.62□□□□□ -0.55
CDC42SE2-208ENST00000505065 KIF24Q5T7B8 1368 aa11.62□□□□□ -0.55
CDC42SE2-208ENST00000505065 SENP3Q9H4L4 574 aaPredicted RBP11.61□□□□□ -0.55
CDC42SE2-208ENST00000505065 PARD3Q8TEW0 1356 aa11.61□□□□□ -0.55
CDC42SE2-208ENST00000505065 NSD3Q9BZ95 1437 aa11.61□□□□□ -0.55
CDC42SE2-208ENST00000505065 CABP1Q9NZU7 370 aa11.6□□□□□ -0.55
CDC42SE2-208ENST00000505065 KTN1Q86UP2 1357 aaKnown RBP11.6□□□□□ -0.55
CDC42SE2-208ENST00000505065 JCADQ9P266 1359 aa11.6□□□□□ -0.55
CDC42SE2-208ENST00000505065 AMER1Q5JTC6 1135 aaPredicted RBP11.6□□□□□ -0.55
CDC42SE2-208ENST00000505065 PLEKHG2Q9H7P9 1386 aa11.6□□□□□ -0.55
CDC42SE2-208ENST00000505065 TTC21BQ7Z4L5 1316 aa11.6□□□□□ -0.55
CDC42SE2-208ENST00000505065 CDK12Q9NYV4 1490 aaPredicted RBP11.59□□□□□ -0.55
CDC42SE2-208ENST00000505065 SAFB2Q14151 953 aaKnown RBP eCLIP11.58□□□□□ -0.55
CDC42SE2-208ENST00000505065 SLC12A5Q9H2X9 1139 aa11.58□□□□□ -0.56
CDC42SE2-208ENST00000505065 RTL1A6NKG5 1358 aa11.58□□□□□ -0.56
CDC42SE2-208ENST00000505065 SPATA31A6Q5VVP1 1343 aa11.58□□□□□ -0.56
CDC42SE2-208ENST00000505065 UBAP1LF5GYI3 381 aa11.57□□□□□ -0.56
CDC42SE2-208ENST00000505065 GLI3P10071 1580 aa11.56□□□□□ -0.56
CDC42SE2-208ENST00000505065 LRRC37A3O60309 1634 aa11.56□□□□□ -0.56
CDC42SE2-208ENST00000505065 SRPK2P78362 688 aaKnown RBP11.56□□□□□ -0.56
CDC42SE2-208ENST00000505065 ESCO1Q5FWF5 840 aa11.56□□□□□ -0.56
CDC42SE2-208ENST00000505065 SIPA1L3O60292 1781 aaPredicted RBP11.55□□□□□ -0.56
CDC42SE2-208ENST00000505065 KRT28Q7Z3Y7 464 aa11.55□□□□□ -0.56
CDC42SE2-208ENST00000505065 TERF2IPQ9NYB0 399 aa11.55□□□□□ -0.56
CDC42SE2-208ENST00000505065 CICQ96RK0 1608 aaPredicted RBP11.55□□□□□ -0.56
CDC42SE2-208ENST00000505065 BLMP54132 1417 aaPredicted RBP11.54□□□□□ -0.56
CDC42SE2-208ENST00000505065 PSME1Q06323 249 aa11.54□□□□□ -0.56
CDC42SE2-208ENST00000505065 ZNF316A6NFI3 1004 aaPredicted RBP11.54□□□□□ -0.56
CDC42SE2-208ENST00000505065 FYB1O15117 783 aa11.54□□□□□ -0.56
CDC42SE2-208ENST00000505065 BRWD3Q6RI45 1802 aa11.54□□□□□ -0.56
CDC42SE2-208ENST00000505065 RGPD3A6NKT7 1758 aaPredicted RBP11.53□□□□□ -0.56
CDC42SE2-208ENST00000505065 RGPD4Q7Z3J3 1758 aa11.53□□□□□ -0.56
CDC42SE2-208ENST00000505065 SBF2Q86WG5 1849 aa11.53□□□□□ -0.56
CDC42SE2-208ENST00000505065 HSPA1LP34931 641 aa11.53□□□□□ -0.56
CDC42SE2-208ENST00000505065 LRRC59Q96AG4 307 aaKnown RBP11.53□□□□□ -0.56
CDC42SE2-208ENST00000505065 COL5A2P05997 1499 aaPredicted RBP11.53□□□□□ -0.56
CDC42SE2-208ENST00000505065 BCL9LQ86UU0 1499 aa11.53□□□□□ -0.56
CDC42SE2-208ENST00000505065 CGNL1Q0VF96 1302 aa11.53□□□□□ -0.56
CDC42SE2-208ENST00000505065 ATRNO75882 1429 aa11.53□□□□□ -0.56
CDC42SE2-208ENST00000505065 PANK3Q9H999 370 aa11.52□□□□□ -0.57
CDC42SE2-208ENST00000505065 PAPPAQ13219 1627 aa11.51□□□□□ -0.57
CDC42SE2-208ENST00000505065 HDGFL2Q7Z4V5 671 aaPredicted RBP11.51□□□□□ -0.57
CDC42SE2-208ENST00000505065 DDX17Q92841 729 aaKnown RBP11.51□□□□□ -0.57
CDC42SE2-208ENST00000505065 DISP2A7MBM2 1401 aa11.51□□□□□ -0.57
CDC42SE2-208ENST00000505065 PMFBP1Q8TBY8 1022 aa11.51□□□□□ -0.57
CDC42SE2-208ENST00000505065 ZNF831Q5JPB2 1677 aa11.5□□□□□ -0.57
CDC42SE2-208ENST00000505065 FOXO3O43524 673 aa11.5□□□□□ -0.57
CDC42SE2-208ENST00000505065 C14orf37Q86TY3 774 aa11.5□□□□□ -0.57
CDC42SE2-208ENST00000505065 DLG5Q8TDM6 1919 aa11.5□□□□□ -0.57
CDC42SE2-208ENST00000505065 TOGARAM1Q9Y4F4 1720 aa11.49□□□□□ -0.57
CDC42SE2-208ENST00000505065 SCN11AQ9UI33 1791 aa11.48□□□□□ -0.57
CDC42SE2-208ENST00000505065 FNBP4Q8N3X1 1017 aaPredicted RBP11.48□□□□□ -0.57
CDC42SE2-208ENST00000505065 ARHGEF25Q86VW2 580 aa11.47□□□□□ -0.57
CDC42SE2-208ENST00000505065 TNS1Q9HBL0 1735 aaKnown RBP11.47□□□□□ -0.57
CDC42SE2-208ENST00000505065 NME9Q86XW9 330 aa11.46□□□□□ -0.57
CDC42SE2-208ENST00000505065 NGDNQ8NEJ9 315 aaKnown RBP11.46□□□□□ -0.57
CDC42SE2-208ENST00000505065 NHSQ6T4R5 1651 aa11.45□□□□□ -0.58
CDC42SE2-208ENST00000505065 UBR2Q8IWV8 1755 aa11.45□□□□□ -0.58
CDC42SE2-208ENST00000505065 NUTM2FA1L443 756 aa11.44□□□□□ -0.58
CDC42SE2-208ENST00000505065 KDRP35968 1356 aa11.44□□□□□ -0.58
CDC42SE2-208ENST00000505065 KCNH5Q8NCM2 988 aa11.44□□□□□ -0.58
CDC42SE2-208ENST00000505065 BCL9O00512 1426 aa11.44□□□□□ -0.58
CDC42SE2-208ENST00000505065 NLRP13Q86W25 1043 aa11.44□□□□□ -0.58
CDC42SE2-208ENST00000505065 ZRANB1Q9UGI0 708 aa11.44□□□□□ -0.58
CDC42SE2-208ENST00000505065 ITGB4P16144 1822 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms