RNA–Protein interactions for RNA: ENST00000504195.1

HMGB3P17-201, Transcript of high mobility group box 3 pseudogene 17, humanhuman

BASIC

Gene HMGB3P17, Length 649 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P17-201ENST00000504195 KRTAP1-3Q8IUG1 177 aa6.78□□□□□ -1.32
HMGB3P17-201ENST00000504195 GNPATO15228 680 aa6.77□□□□□ -1.33
HMGB3P17-201ENST00000504195 ZIC2O95409 532 aaPredicted RBP6.77□□□□□ -1.33
HMGB3P17-201ENST00000504195 PAXIP1Q6ZW49 1069 aaPredicted RBP6.77□□□□□ -1.33
HMGB3P17-201ENST00000504195 MPNDQ8N594 471 aa6.77□□□□□ -1.33
HMGB3P17-201ENST00000504195 WHAMMQ8TF30 809 aa6.77□□□□□ -1.33
HMGB3P17-201ENST00000504195 USP46P62068 366 aa6.76□□□□□ -1.33
HMGB3P17-201ENST00000504195 LINC00528Q8N1L1 170 aa6.76□□□□□ -1.33
HMGB3P17-201ENST00000504195 PHF20L1A8MW92 1017 aa6.75□□□□□ -1.33
HMGB3P17-201ENST00000504195 CCNYL3P0C7X3 344 aa6.75□□□□□ -1.33
HMGB3P17-201ENST00000504195 SLURP2P0DP57 97 aa6.75□□□□□ -1.33
HMGB3P17-201ENST00000504195 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.75□□□□□ -1.33
HMGB3P17-201ENST00000504195 DNMT3LQ9UJW3 386 aa6.75□□□□□ -1.33
HMGB3P17-201ENST00000504195 RNFT1Q5M7Z0 435 aa6.74□□□□□ -1.33
HMGB3P17-201ENST00000504195 UNC93B1Q9H1C4 597 aa6.74□□□□□ -1.33
HMGB3P17-201ENST00000504195 ZFAND3Q9H8U3 227 aa6.74□□□□□ -1.33
HMGB3P17-201ENST00000504195 CD46P15529 392 aa6.73□□□□□ -1.33
HMGB3P17-201ENST00000504195 FAM174AQ8TBP5 190 aa6.73□□□□□ -1.33
HMGB3P17-201ENST00000504195 NANOS1Q8WY41 292 aaKnown RBP6.73□□□□□ -1.33
HMGB3P17-201ENST00000504195 HLA-CQ95604 372 aa6.73□□□□□ -1.33
HMGB3P17-201ENST00000504195 ITPKCQ96DU7 683 aa6.73□□□□□ -1.33
HMGB3P17-201ENST00000504195 KLF16Q9BXK1 252 aaPredicted RBP6.73□□□□□ -1.33
HMGB3P17-201ENST00000504195 ENAMQ9NRM1 1142 aa6.73□□□□□ -1.33
HMGB3P17-201ENST00000504195 SOS2Q07890 1332 aaPredicted RBP6.73□□□□□ -1.33
HMGB3P17-201ENST00000504195 CDC14CA4D256 554 aa6.72□□□□□ -1.33
HMGB3P17-201ENST00000504195 MS4A1P11836 297 aa6.72□□□□□ -1.33
HMGB3P17-201ENST00000504195 PTSQ03393 145 aa6.72□□□□□ -1.33
HMGB3P17-201ENST00000504195 ARID5BQ14865 1188 aa6.72□□□□□ -1.33
HMGB3P17-201ENST00000504195 PODNQ7Z5L7 613 aa6.72□□□□□ -1.33
HMGB3P17-201ENST00000504195 RETREG3Q86VR2 466 aa6.72□□□□□ -1.33
HMGB3P17-201ENST00000504195 ZNF511Q8NB15 262 aa6.72□□□□□ -1.33
HMGB3P17-201ENST00000504195 BAP1Q92560 729 aa6.72□□□□□ -1.33
HMGB3P17-201ENST00000504195 DCAF5Q96JK2 942 aa6.72□□□□□ -1.33
HMGB3P17-201ENST00000504195 HOXA2O43364 376 aa6.71□□□□□ -1.34
HMGB3P17-201ENST00000504195 KCNV2Q8TDN2 545 aa6.71□□□□□ -1.34
HMGB3P17-201ENST00000504195 PROCP04070 461 aa6.7□□□□□ -1.34
HMGB3P17-201ENST00000504195 MEIOBQ8N635 442 aa6.7□□□□□ -1.34
HMGB3P17-201ENST00000504195 SYMPKQ92797 1274 aaKnown RBP6.7□□□□□ -1.34
HMGB3P17-201ENST00000504195 TTLL8A6PVC2 850 aa6.69□□□□□ -1.34
HMGB3P17-201ENST00000504195 GUCA2AQ02747 115 aa6.69□□□□□ -1.34
HMGB3P17-201ENST00000504195 SV2AQ7L0J3 742 aa6.69□□□□□ -1.34
HMGB3P17-201ENST00000504195 P3H3Q8IVL6 736 aa6.69□□□□□ -1.34
HMGB3P17-201ENST00000504195 CCDC155Q8N6L0 562 aa6.69□□□□□ -1.34
HMGB3P17-201ENST00000504195 PHOX2BQ99453 314 aa6.69□□□□□ -1.34
HMGB3P17-201ENST00000504195 SPTLC1O15269 473 aa6.68□□□□□ -1.34
HMGB3P17-201ENST00000504195 ADAMTS2O95450 1211 aa6.68□□□□□ -1.34
HMGB3P17-201ENST00000504195 NR5A1Q13285 461 aa6.68□□□□□ -1.34
HMGB3P17-201ENST00000504195 PTPRNQ16849 979 aa6.68□□□□□ -1.34
HMGB3P17-201ENST00000504195 LCE3BQ5TA77 95 aa6.68□□□□□ -1.34
HMGB3P17-201ENST00000504195 SMYD5Q6GMV2 418 aa6.67□□□□□ -1.34
HMGB3P17-201ENST00000504195 LYPD4Q6UWN0 246 aa6.67□□□□□ -1.34
HMGB3P17-201ENST00000504195 VWA5B2Q8N398 1253 aa6.67□□□□□ -1.34
HMGB3P17-201ENST00000504195 TSEN34Q9BSV6 310 aaKnown RBP6.67□□□□□ -1.34
HMGB3P17-201ENST00000504195 KCNH2Q12809 1159 aa6.66□□□□□ -1.34
HMGB3P17-201ENST00000504195 BEND7Q8N7W2 519 aaPredicted RBP6.66□□□□□ -1.34
HMGB3P17-201ENST00000504195 BTBD11A6QL63 1104 aa6.65□□□□□ -1.34
HMGB3P17-201ENST00000504195 C6orf229H3BNL8 230 aa6.65□□□□□ -1.34
HMGB3P17-201ENST00000504195 ITGA6P23229 1130 aa6.65□□□□□ -1.34
HMGB3P17-201ENST00000504195 CDK15Q96Q40 435 aa6.65□□□□□ -1.34
HMGB3P17-201ENST00000504195 EVA1BQ9NVM1 165 aa6.65□□□□□ -1.34
HMGB3P17-201ENST00000504195 FIGNL2A6NMB9 653 aa6.64□□□□□ -1.35
HMGB3P17-201ENST00000504195 SEMA3EO15041 775 aa6.64□□□□□ -1.35
HMGB3P17-201ENST00000504195 ITGB2P05107 769 aa6.64□□□□□ -1.35
HMGB3P17-201ENST00000504195 CELA2BP08218 269 aaPredicted RBP6.64□□□□□ -1.35
HMGB3P17-201ENST00000504195 NR3C2P08235 984 aa6.64□□□□□ -1.35
HMGB3P17-201ENST00000504195 BAG6P46379 1132 aa6.64□□□□□ -1.35
HMGB3P17-201ENST00000504195 SRSF11Q05519 484 aaKnown RBP6.64□□□□□ -1.35
HMGB3P17-201ENST00000504195 RBM26Q5T8P6 1007 aaKnown RBP6.64□□□□□ -1.35
HMGB3P17-201ENST00000504195 CNTNAP5Q8WYK1 1306 aa6.64□□□□□ -1.35
HMGB3P17-201ENST00000504195 NEDD1Q8NHV4 660 aa6.63□□□□□ -1.35
HMGB3P17-201ENST00000504195 SLC35F4A4IF30 521 aa6.61□□□□□ -1.35
HMGB3P17-201ENST00000504195 FURINP09958 794 aa6.61□□□□□ -1.35
HMGB3P17-201ENST00000504195 AGERQ15109 404 aa6.61□□□□□ -1.35
HMGB3P17-201ENST00000504195 NUTM1Q86Y26 1132 aa6.61□□□□□ -1.35
HMGB3P17-201ENST00000504195 CTHP32929 405 aa6.6□□□□□ -1.35
HMGB3P17-201ENST00000504195 SH3RF1Q7Z6J0 888 aa6.6□□□□□ -1.35
HMGB3P17-201ENST00000504195 GPR37O15354 613 aa6.59□□□□□ -1.35
HMGB3P17-201ENST00000504195 FDX1P10109 184 aa6.59□□□□□ -1.35
HMGB3P17-201ENST00000504195 FSHRP23945 695 aa6.59□□□□□ -1.35
HMGB3P17-201ENST00000504195 FOXJ1Q92949 421 aa6.58□□□□□ -1.36
HMGB3P17-201ENST00000504195 EMILIN1Q9Y6C2 1016 aa6.58□□□□□ -1.36
HMGB3P17-201ENST00000504195 TESPA1A2RU30 521 aaPredicted RBP6.56□□□□□ -1.36
HMGB3P17-201ENST00000504195 GRM5P41594 1212 aa6.56□□□□□ -1.36
HMGB3P17-201ENST00000504195 MDM2Q00987 491 aaPredicted RBP6.56□□□□□ -1.36
HMGB3P17-201ENST00000504195 BPHLQ86WA6 291 aaPredicted RBP6.55□□□□□ -1.36
HMGB3P17-201ENST00000504195 PRR7Q8TB68 274 aa6.55□□□□□ -1.36
HMGB3P17-201ENST00000504195 SPINT1O43278 529 aa6.54□□□□□ -1.36
HMGB3P17-201ENST00000504195 AMER1Q5JTC6 1135 aaPredicted RBP6.54□□□□□ -1.36
HMGB3P17-201ENST00000504195 CCDC116Q8IYX3 515 aa6.54□□□□□ -1.36
HMGB3P17-201ENST00000504195 KRTAP4-12Q9BQ66 201 aa6.54□□□□□ -1.36
HMGB3P17-201ENST00000504195 TSHZ2Q9NRE2 1034 aa6.54□□□□□ -1.36
HMGB3P17-201ENST00000504195 BCRP11274 1271 aa6.53□□□□□ -1.36
HMGB3P17-201ENST00000504195 DESI1Q6ICB0 168 aa6.53□□□□□ -1.36
HMGB3P17-201ENST00000504195 VASH1Q7L8A9 365 aaPredicted RBP6.53□□□□□ -1.36
HMGB3P17-201ENST00000504195 MBIPQ9NS73 344 aa6.53□□□□□ -1.36
HMGB3P17-201ENST00000504195 PCDHGC3Q9UN70 934 aa6.53□□□□□ -1.36
HMGB3P17-201ENST00000504195 ALYREFQ86V81 257 aaKnown RBP6.52□□□□□ -1.37
HMGB3P17-201ENST00000504195 GPIHBP1Q8IV16 184 aa6.52□□□□□ -1.37
HMGB3P17-201ENST00000504195 PGPEP1Q9NXJ5 209 aa6.52□□□□□ -1.37
HMGB3P17-201ENST00000504195 SPDYE5A6NIY4 337 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms