RNA–Protein interactions for RNA: ENST00000503418.5

UBE2D3-215, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 4

Gene UBE2D3, Length 662 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-215ENST00000503418 CCDC61Q9Y6R9 512 aa27.94■■■□□ 2.06
UBE2D3-215ENST00000503418 FAM83GA6ND36 823 aa27.93■■■□□ 2.06
UBE2D3-215ENST00000503418 CRYBG1Q9Y4K1 1723 aa27.92■■■□□ 2.06
UBE2D3-215ENST00000503418 SRPK2P78362 688 aaKnown RBP27.92■■■□□ 2.06
UBE2D3-215ENST00000503418 CCDC9Q9Y3X0 531 aaKnown RBP27.92■■■□□ 2.06
UBE2D3-215ENST00000503418 ACEP12821 1306 aa27.92■■■□□ 2.06
UBE2D3-215ENST00000503418 POLR3AO14802 1390 aaPredicted RBP27.9■■■□□ 2.06
UBE2D3-215ENST00000503418 VPS72Q15906 364 aa27.9■■■□□ 2.06
UBE2D3-215ENST00000503418 ROCK2O75116 1388 aaKnown RBP27.89■■■□□ 2.06
UBE2D3-215ENST00000503418 COL14A1Q05707 1796 aaKnown RBP27.89■■■□□ 2.06
UBE2D3-215ENST00000503418 NRAPQ86VF7 1730 aa27.88■■■□□ 2.05
UBE2D3-215ENST00000503418 CABP2Q9NPB3 220 aa27.88■■■□□ 2.05
UBE2D3-215ENST00000503418 PLEKHG3A1L390 1219 aa27.87■■■□□ 2.05
UBE2D3-215ENST00000503418 NBPF8Q3BBV2 869 aa27.87■■■□□ 2.05
UBE2D3-215ENST00000503418 PPIP5K1Q6PFW1 1433 aa27.86■■■□□ 2.05
UBE2D3-215ENST00000503418 BTG4Q9NY30 223 aa27.86■■■□□ 2.05
UBE2D3-215ENST00000503418 BRWD3Q6RI45 1802 aa27.85■■■□□ 2.05
UBE2D3-215ENST00000503418 PHRF1Q9P1Y6 1649 aaKnown RBP27.85■■■□□ 2.05
UBE2D3-215ENST00000503418 NUTM2GQ5VZR2 741 aa27.85■■■□□ 2.05
UBE2D3-215ENST00000503418 PRDM11Q9NQV5 511 aa27.83■■■□□ 2.05
UBE2D3-215ENST00000503418 SEPT12Q8IYM1 358 aa27.81■■■□□ 2.04
UBE2D3-215ENST00000503418 EP400Q96L91 3159 aa27.81■■■□□ 2.04
UBE2D3-215ENST00000503418 KIAA0232Q92628 1395 aa27.79■■■□□ 2.04
UBE2D3-215ENST00000503418 EVC2Q86UK5 1308 aa27.79■■■□□ 2.04
UBE2D3-215ENST00000503418 A0A0G2JS52 829 aa27.79■■■□□ 2.04
UBE2D3-215ENST00000503418 MYT1Q01538 1121 aa27.79■■■□□ 2.04
UBE2D3-215ENST00000503418 ABTB2Q8N961 1025 aa27.79■■■□□ 2.04
UBE2D3-215ENST00000503418 TRIM26Q12899 539 aaPredicted RBP27.78■■■□□ 2.04
UBE2D3-215ENST00000503418 TONSLQ96HA7 1378 aa27.76■■■□□ 2.03
UBE2D3-215ENST00000503418 ZC3H6P61129 1189 aaKnown RBP27.76■■■□□ 2.03
UBE2D3-215ENST00000503418 CHRNA2Q15822 529 aa27.76■■■□□ 2.03
UBE2D3-215ENST00000503418 CABP1Q9NZU7 370 aa27.76■■■□□ 2.03
UBE2D3-215ENST00000503418 FAM98CQ17RN3 349 aaKnown RBP27.75■■■□□ 2.03
UBE2D3-215ENST00000503418 NRKQ7Z2Y5 1582 aa27.74■■■□□ 2.03
UBE2D3-215ENST00000503418 ONECUT3O60422 494 aaPredicted RBP27.74■■■□□ 2.03
UBE2D3-215ENST00000503418 CCDC125Q86Z20 511 aa27.73■■■□□ 2.03
UBE2D3-215ENST00000503418 KRT27Q7Z3Y8 459 aa27.72■■■□□ 2.03
UBE2D3-215ENST00000503418 USP6P35125 1406 aa27.71■■■□□ 2.03
UBE2D3-215ENST00000503418 SPATA31A5Q5VU36 1347 aa27.7■■■□□ 2.03
UBE2D3-215ENST00000503418 SPATA31A7Q8IWB4 1347 aa27.7■■■□□ 2.03
UBE2D3-215ENST00000503418 NLRP13Q86W25 1043 aa27.7■■■□□ 2.02
UBE2D3-215ENST00000503418 STRN4Q9NRL3 753 aa27.7■■■□□ 2.02
UBE2D3-215ENST00000503418 BRD4O60885 1362 aaPredicted RBP27.7■■■□□ 2.02
UBE2D3-215ENST00000503418 USP19O94966 1318 aa27.69■■■□□ 2.02
UBE2D3-215ENST00000503418 CARD11Q9BXL7 1154 aa27.69■■■□□ 2.02
UBE2D3-215ENST00000503418 BLMP54132 1417 aaPredicted RBP27.67■■■□□ 2.02
UBE2D3-215ENST00000503418 CPDO75976 1380 aa27.64■■■□□ 2.02
UBE2D3-215ENST00000503418 AKAP12Q02952 1782 aa27.64■■■□□ 2.02
UBE2D3-215ENST00000503418 GCP02774 474 aa27.64■■■□□ 2.02
UBE2D3-215ENST00000503418 EVA1CP58658 441 aa27.64■■■□□ 2.02
UBE2D3-215ENST00000503418 NLRP6P59044 892 aa27.64■■■□□ 2.02
UBE2D3-215ENST00000503418 SF3B2Q13435 895 aaKnown RBP27.63■■■□□ 2.01
UBE2D3-215ENST00000503418 SPATA31A1Q5TZJ5 1347 aa27.63■■■□□ 2.01
UBE2D3-215ENST00000503418 PIK3C2AO00443 1686 aa27.62■■■□□ 2.01
UBE2D3-215ENST00000503418 THSD7AQ9UPZ6 1657 aa27.62■■■□□ 2.01
UBE2D3-215ENST00000503418 LMO7Q8WWI1 1683 aa27.62■■■□□ 2.01
UBE2D3-215ENST00000503418 CAMTA1Q9Y6Y1 1673 aa27.62■■■□□ 2.01
UBE2D3-215ENST00000503418 SSH2Q76I76 1423 aa27.61■■■□□ 2.01
UBE2D3-215ENST00000503418 ZBTB7CA1YPR0 619 aa27.61■■■□□ 2.01
UBE2D3-215ENST00000503418 USP35Q9P2H5 1018 aa27.61■■■□□ 2.01
UBE2D3-215ENST00000503418 SBNO2Q9Y2G9 1366 aa27.6■■■□□ 2.01
UBE2D3-215ENST00000503418 ZNF692Q9BU19 519 aaPredicted RBP27.59■■■□□ 2.01
UBE2D3-215ENST00000503418 SLIT3O75094 1523 aa27.58■■■□□ 2.01
UBE2D3-215ENST00000503418 DEFB132Q7Z7B7 95 aa27.58■■■□□ 2.01
UBE2D3-215ENST00000503418 FAM182BQ5T319 152 aa27.57■■■□□ 2
UBE2D3-215ENST00000503418 ZRANB1Q9UGI0 708 aa27.57■■■□□ 2
UBE2D3-215ENST00000503418 LARP1Q6PKG0 1096 aaKnown RBP27.56■■■□□ 2
UBE2D3-215ENST00000503418 TTC21BQ7Z4L5 1316 aa27.56■■■□□ 2
UBE2D3-215ENST00000503418 KTN1Q86UP2 1357 aaKnown RBP27.55■■■□□ 2
UBE2D3-215ENST00000503418 CPSF1Q10570 1443 aaKnown RBP27.54■■■□□ 2
UBE2D3-215ENST00000503418 MON2Q7Z3U7 1717 aa27.53■■■□□ 2
UBE2D3-215ENST00000503418 COL5A2P05997 1499 aaPredicted RBP27.53■■■□□ 2
UBE2D3-215ENST00000503418 TTC21AQ8NDW8 1320 aa27.52■■■□□ 2
UBE2D3-215ENST00000503418 TMC1Q8TDI8 760 aa27.51■■□□□ 1.99
UBE2D3-215ENST00000503418 RGPD1P0DJD0 1748 aa27.5■■□□□ 1.99
UBE2D3-215ENST00000503418 SOX12O15370 315 aa27.5■■□□□ 1.99
UBE2D3-215ENST00000503418 BARGINQ6ZT62 677 aa27.5■■□□□ 1.99
UBE2D3-215ENST00000503418 TCP11L2Q8N4U5 519 aa27.5■■□□□ 1.99
UBE2D3-215ENST00000503418 AATKQ6ZMQ8 1374 aa27.49■■□□□ 1.99
UBE2D3-215ENST00000503418 BAG6P46379 1132 aa27.48■■□□□ 1.99
UBE2D3-215ENST00000503418 KCNH5Q8NCM2 988 aa27.47■■□□□ 1.99
UBE2D3-215ENST00000503418 COL18A1P39060 1754 aa27.47■■□□□ 1.99
UBE2D3-215ENST00000503418 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.46■■□□□ 1.99
UBE2D3-215ENST00000503418 CRB1P82279 1406 aa27.46■■□□□ 1.99
UBE2D3-215ENST00000503418 CD163L1Q9NR16 1453 aa27.45■■□□□ 1.99
UBE2D3-215ENST00000503418 THRAP3Q9Y2W1 955 aaKnown RBP27.45■■□□□ 1.98
UBE2D3-215ENST00000503418 ST20-MTHFSA0A0A6YYL1 179 aa27.44■■□□□ 1.98
UBE2D3-215ENST00000503418 PDE3BQ13370 1112 aa27.44■■□□□ 1.98
UBE2D3-215ENST00000503418 HDGFL2Q7Z4V5 671 aaPredicted RBP27.44■■□□□ 1.98
UBE2D3-215ENST00000503418 SLC12A5Q9H2X9 1139 aa27.44■■□□□ 1.98
UBE2D3-215ENST00000503418 RGPD5Q99666 1765 aa27.43■■□□□ 1.98
UBE2D3-215ENST00000503418 TNS1Q9HBL0 1735 aaKnown RBP27.43■■□□□ 1.98
UBE2D3-215ENST00000503418 FAM196AQ6ZSG2 479 aa27.42■■□□□ 1.98
UBE2D3-215ENST00000503418 ARHGEF25Q86VW2 580 aa27.42■■□□□ 1.98
UBE2D3-215ENST00000503418 NFAT5O94916 1531 aa27.41■■□□□ 1.98
UBE2D3-215ENST00000503418 TOM1L2Q6ZVM7 507 aa27.41■■□□□ 1.98
UBE2D3-215ENST00000503418 AXIN2Q9Y2T1 843 aa27.41■■□□□ 1.98
UBE2D3-215ENST00000503418 PARP4Q9UKK3 1724 aaKnown RBP27.41■■□□□ 1.98
UBE2D3-215ENST00000503418 TESK2Q96S53 571 aa27.4■■□□□ 1.98
UBE2D3-215ENST00000503418 TRIM37O94972 964 aa27.39■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms