RNA–Protein interactions for RNA: ENST00000503215.5

SCLT1-204, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 1,364 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-204ENST00000503215 CABP2Q9NPB3 220 aa23.41■■□□□ 1.34
SCLT1-204ENST00000503215 PLEKHG3A1L390 1219 aa23.4■■□□□ 1.34
SCLT1-204ENST00000503215 POLR3AO14802 1390 aaPredicted RBP23.4■■□□□ 1.34
SCLT1-204ENST00000503215 SRPK2P78362 688 aaKnown RBP23.4■■□□□ 1.34
SCLT1-204ENST00000503215 CCDC9Q9Y3X0 531 aaKnown RBP23.4■■□□□ 1.34
SCLT1-204ENST00000503215 PLCH1Q4KWH8 1693 aa23.39■■□□□ 1.34
SCLT1-204ENST00000503215 BTG4Q9NY30 223 aa23.39■■□□□ 1.33
SCLT1-204ENST00000503215 ITSN1Q15811 1721 aa23.38■■□□□ 1.33
SCLT1-204ENST00000503215 SEPT12Q8IYM1 358 aa23.37■■□□□ 1.33
SCLT1-204ENST00000503215 TOPAZ1Q8N9V7 1692 aa23.36■■□□□ 1.33
SCLT1-204ENST00000503215 EP400Q96L91 3159 aa23.36■■□□□ 1.33
SCLT1-204ENST00000503215 NWD2Q9ULI1 1742 aa23.34■■□□□ 1.33
SCLT1-204ENST00000503215 CRYBG1Q9Y4K1 1723 aa23.34■■□□□ 1.33
SCLT1-204ENST00000503215 TRPM1Q7Z4N2 1603 aa23.34■■□□□ 1.33
SCLT1-204ENST00000503215 ONECUT3O60422 494 aaPredicted RBP23.34■■□□□ 1.33
SCLT1-204ENST00000503215 CHRNA2Q15822 529 aa23.33■■□□□ 1.33
SCLT1-204ENST00000503215 PPIP5K1Q6PFW1 1433 aa23.33■■□□□ 1.33
SCLT1-204ENST00000503215 PRDM11Q9NQV5 511 aa23.33■■□□□ 1.33
SCLT1-204ENST00000503215 ROCK2O75116 1388 aaKnown RBP23.33■■□□□ 1.32
SCLT1-204ENST00000503215 ZC3H6P61129 1189 aaKnown RBP23.32■■□□□ 1.32
SCLT1-204ENST00000503215 CABP1Q9NZU7 370 aa23.32■■□□□ 1.32
SCLT1-204ENST00000503215 QRICH2Q9H0J4 1663 aa23.32■■□□□ 1.32
SCLT1-204ENST00000503215 KIAA0232Q92628 1395 aa23.32■■□□□ 1.32
SCLT1-204ENST00000503215 NRAPQ86VF7 1730 aa23.31■■□□□ 1.32
SCLT1-204ENST00000503215 FAM98CQ17RN3 349 aaKnown RBP23.3■■□□□ 1.32
SCLT1-204ENST00000503215 ABTB2Q8N961 1025 aa23.3■■□□□ 1.32
SCLT1-204ENST00000503215 BRWD3Q6RI45 1802 aa23.3■■□□□ 1.32
SCLT1-204ENST00000503215 COL14A1Q05707 1796 aaKnown RBP23.3■■□□□ 1.32
SCLT1-204ENST00000503215 SPATA31A5Q5VU36 1347 aa23.26■■□□□ 1.31
SCLT1-204ENST00000503215 SPATA31A7Q8IWB4 1347 aa23.26■■□□□ 1.31
SCLT1-204ENST00000503215 A0A0G2JS52 829 aa23.26■■□□□ 1.31
SCLT1-204ENST00000503215 MYT1Q01538 1121 aa23.26■■□□□ 1.31
SCLT1-204ENST00000503215 TRIM26Q12899 539 aaPredicted RBP23.26■■□□□ 1.31
SCLT1-204ENST00000503215 EVC2Q86UK5 1308 aa23.25■■□□□ 1.31
SCLT1-204ENST00000503215 KRT27Q7Z3Y8 459 aa23.25■■□□□ 1.31
SCLT1-204ENST00000503215 PHRF1Q9P1Y6 1649 aaKnown RBP23.25■■□□□ 1.31
SCLT1-204ENST00000503215 STRN4Q9NRL3 753 aa23.24■■□□□ 1.31
SCLT1-204ENST00000503215 USP19O94966 1318 aa23.24■■□□□ 1.31
SCLT1-204ENST00000503215 CCDC125Q86Z20 511 aa23.23■■□□□ 1.31
SCLT1-204ENST00000503215 USP6P35125 1406 aa23.21■■□□□ 1.31
SCLT1-204ENST00000503215 FAM182BQ5T319 152 aa23.21■■□□□ 1.31
SCLT1-204ENST00000503215 DEFB132Q7Z7B7 95 aa23.21■■□□□ 1.31
SCLT1-204ENST00000503215 NLRP13Q86W25 1043 aa23.21■■□□□ 1.31
SCLT1-204ENST00000503215 GCP02774 474 aa23.2■■□□□ 1.3
SCLT1-204ENST00000503215 CARD11Q9BXL7 1154 aa23.2■■□□□ 1.3
SCLT1-204ENST00000503215 BLMP54132 1417 aaPredicted RBP23.2■■□□□ 1.3
SCLT1-204ENST00000503215 SPATA31A1Q5TZJ5 1347 aa23.19■■□□□ 1.3
SCLT1-204ENST00000503215 SSH2Q76I76 1423 aa23.19■■□□□ 1.3
SCLT1-204ENST00000503215 NRKQ7Z2Y5 1582 aa23.19■■□□□ 1.3
SCLT1-204ENST00000503215 NLRP6P59044 892 aa23.18■■□□□ 1.3
SCLT1-204ENST00000503215 TONSLQ96HA7 1378 aa23.18■■□□□ 1.3
SCLT1-204ENST00000503215 CAMTA1Q9Y6Y1 1673 aa23.18■■□□□ 1.3
SCLT1-204ENST00000503215 USP35Q9P2H5 1018 aa23.17■■□□□ 1.3
SCLT1-204ENST00000503215 CPDO75976 1380 aa23.16■■□□□ 1.3
SCLT1-204ENST00000503215 EVA1CP58658 441 aa23.16■■□□□ 1.3
SCLT1-204ENST00000503215 LARP1Q6PKG0 1096 aaKnown RBP23.16■■□□□ 1.3
SCLT1-204ENST00000503215 BRD4O60885 1362 aaPredicted RBP23.15■■□□□ 1.3
SCLT1-204ENST00000503215 ZBTB7CA1YPR0 619 aa23.14■■□□□ 1.3
SCLT1-204ENST00000503215 TTC21BQ7Z4L5 1316 aa23.14■■□□□ 1.29
SCLT1-204ENST00000503215 THSD7AQ9UPZ6 1657 aa23.12■■□□□ 1.29
SCLT1-204ENST00000503215 ZRANB1Q9UGI0 708 aa23.12■■□□□ 1.29
SCLT1-204ENST00000503215 LMO7Q8WWI1 1683 aa23.12■■□□□ 1.29
SCLT1-204ENST00000503215 ZNF692Q9BU19 519 aaPredicted RBP23.11■■□□□ 1.29
SCLT1-204ENST00000503215 PIK3C2AO00443 1686 aa23.1■■□□□ 1.29
SCLT1-204ENST00000503215 SF3B2Q13435 895 aaKnown RBP23.1■■□□□ 1.29
SCLT1-204ENST00000503215 CPSF1Q10570 1443 aaKnown RBP23.1■■□□□ 1.29
SCLT1-204ENST00000503215 SRCAPQ6ZRS2 3230 aa23.1■■□□□ 1.29
SCLT1-204ENST00000503215 SBNO2Q9Y2G9 1366 aa23.1■■□□□ 1.29
SCLT1-204ENST00000503215 SLIT3O75094 1523 aa23.09■■□□□ 1.29
SCLT1-204ENST00000503215 SOX12O15370 315 aa23.08■■□□□ 1.29
SCLT1-204ENST00000503215 BARGINQ6ZT62 677 aa23.07■■□□□ 1.28
SCLT1-204ENST00000503215 TCP11L2Q8N4U5 519 aa23.07■■□□□ 1.28
SCLT1-204ENST00000503215 SLC12A5Q9H2X9 1139 aa23.07■■□□□ 1.28
SCLT1-204ENST00000503215 AXIN2Q9Y2T1 843 aa23.07■■□□□ 1.28
SCLT1-204ENST00000503215 KTN1Q86UP2 1357 aaKnown RBP23.07■■□□□ 1.28
SCLT1-204ENST00000503215 COL5A2P05997 1499 aaPredicted RBP23.07■■□□□ 1.28
SCLT1-204ENST00000503215 AKAP12Q02952 1782 aa23.06■■□□□ 1.28
SCLT1-204ENST00000503215 AATKQ6ZMQ8 1374 aa23.05■■□□□ 1.28
SCLT1-204ENST00000503215 TMC1Q8TDI8 760 aa23.05■■□□□ 1.28
SCLT1-204ENST00000503215 CD163L1Q9NR16 1453 aa23.04■■□□□ 1.28
SCLT1-204ENST00000503215 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.04■■□□□ 1.281e-6■■□□□ 12.4
SCLT1-204ENST00000503215 TTC21AQ8NDW8 1320 aa23.04■■□□□ 1.28
SCLT1-204ENST00000503215 ST20-MTHFSA0A0A6YYL1 179 aa23.03■■□□□ 1.28
SCLT1-204ENST00000503215 EN1Q05925 392 aaPredicted RBP23.03■■□□□ 1.28
SCLT1-204ENST00000503215 ARHGEF25Q86VW2 580 aa23.03■■□□□ 1.28
SCLT1-204ENST00000503215 TESK2Q96S53 571 aa23.03■■□□□ 1.28
SCLT1-204ENST00000503215 TRIM37O94972 964 aa23.01■■□□□ 1.27
SCLT1-204ENST00000503215 BAG6P46379 1132 aa23.01■■□□□ 1.27
SCLT1-204ENST00000503215 NME9Q86XW9 330 aa23.01■■□□□ 1.27
SCLT1-204ENST00000503215 COL18A1P39060 1754 aa23.01■■□□□ 1.27
SCLT1-204ENST00000503215 PDE3BQ13370 1112 aa23■■□□□ 1.27
SCLT1-204ENST00000503215 FAM196AQ6ZSG2 479 aa23■■□□□ 1.27
SCLT1-204ENST00000503215 CRB1P82279 1406 aa22.99■■□□□ 1.27
SCLT1-204ENST00000503215 KCNH5Q8NCM2 988 aa22.99■■□□□ 1.27
SCLT1-204ENST00000503215 THRAP3Q9Y2W1 955 aaKnown RBP22.99■■□□□ 1.27
SCLT1-204ENST00000503215 TOM1L2Q6ZVM7 507 aa22.98■■□□□ 1.27
SCLT1-204ENST00000503215 MON2Q7Z3U7 1717 aa22.97■■□□□ 1.27
SCLT1-204ENST00000503215 NFAT5O94916 1531 aa22.96■■□□□ 1.27
SCLT1-204ENST00000503215 EZH2Q15910 746 aaKnown RBP22.95■■□□□ 1.26
SCLT1-204ENST00000503215 HDGFL2Q7Z4V5 671 aaPredicted RBP22.95■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 113.9 ms