RNA–Protein interactions for RNA: ENST00000498212.1

HMGXB4-207, Transcript of HMG-box containing 4, humanhuman

TSL 3

Gene HMGXB4, Length 778 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-207ENST00000498212 NUDT16Q96DE0 195 aaKnown RBP12.2□□□□□ -0.46
HMGXB4-207ENST00000498212 SLIT2O94813 1529 aa12.2□□□□□ -0.46
HMGXB4-207ENST00000498212 PLEKHG5O94827 1062 aa12.19□□□□□ -0.46
HMGXB4-207ENST00000498212 NGDNQ8NEJ9 315 aaKnown RBP12.19□□□□□ -0.46
HMGXB4-207ENST00000498212 CABLES1Q8TDN4 633 aa12.19□□□□□ -0.46
HMGXB4-207ENST00000498212 CDK19Q9BWU1 502 aa12.19□□□□□ -0.46
HMGXB4-207ENST00000498212 PHRF1Q9P1Y6 1649 aaKnown RBP12.19□□□□□ -0.46
HMGXB4-207ENST00000498212 CENPJQ9HC77 1338 aaPredicted RBP12.18□□□□□ -0.46
HMGXB4-207ENST00000498212 COL14A1Q05707 1796 aaKnown RBP12.18□□□□□ -0.46
HMGXB4-207ENST00000498212 NRAPQ86VF7 1730 aa12.17□□□□□ -0.46
HMGXB4-207ENST00000498212 BRWD3Q6RI45 1802 aa12.17□□□□□ -0.46
HMGXB4-207ENST00000498212 TRIM26Q12899 539 aaPredicted RBP12.17□□□□□ -0.46
HMGXB4-207ENST00000498212 UPF1Q92900 1129 aaKnown RBP eCLIP12.17□□□□□ -0.46
HMGXB4-207ENST00000498212 GLI3P10071 1580 aa12.17□□□□□ -0.46
HMGXB4-207ENST00000498212 PAK3O75914 559 aaPredicted RBP12.16□□□□□ -0.46
HMGXB4-207ENST00000498212 UNC5CLQ8IV45 518 aa12.16□□□□□ -0.46
HMGXB4-207ENST00000498212 GJD4Q96KN9 370 aaPredicted RBP12.16□□□□□ -0.46
HMGXB4-207ENST00000498212 CCDC61Q9Y6R9 512 aa12.16□□□□□ -0.46
HMGXB4-207ENST00000498212 POLR3AO14802 1390 aaPredicted RBP12.16□□□□□ -0.46
HMGXB4-207ENST00000498212 ROCK2O75116 1388 aaKnown RBP12.16□□□□□ -0.46
HMGXB4-207ENST00000498212 SRPK2P78362 688 aaKnown RBP12.15□□□□□ -0.46
HMGXB4-207ENST00000498212 PPIP5K1Q6PFW1 1433 aa12.14□□□□□ -0.47
HMGXB4-207ENST00000498212 RALGAPBQ86X10 1494 aa12.14□□□□□ -0.47
HMGXB4-207ENST00000498212 ACEP12821 1306 aa12.13□□□□□ -0.47
HMGXB4-207ENST00000498212 PLEKHG3A1L390 1219 aa12.13□□□□□ -0.47
HMGXB4-207ENST00000498212 ATAD2Q6PL18 1390 aa12.13□□□□□ -0.47
HMGXB4-207ENST00000498212 TONSLQ96HA7 1378 aa12.13□□□□□ -0.47
HMGXB4-207ENST00000498212 AKAP12Q02952 1782 aa12.13□□□□□ -0.47
HMGXB4-207ENST00000498212 FAM83GA6ND36 823 aa12.12□□□□□ -0.47
HMGXB4-207ENST00000498212 NBPF8Q3BBV2 869 aa12.12□□□□□ -0.47
HMGXB4-207ENST00000498212 CABP2Q9NPB3 220 aa12.12□□□□□ -0.47
HMGXB4-207ENST00000498212 VPS72Q15906 364 aa12.11□□□□□ -0.47
HMGXB4-207ENST00000498212 EVC2Q86UK5 1308 aa12.11□□□□□ -0.47
HMGXB4-207ENST00000498212 NRKQ7Z2Y5 1582 aa12.1□□□□□ -0.47
HMGXB4-207ENST00000498212 CCDC9Q9Y3X0 531 aaKnown RBP12.1□□□□□ -0.47
HMGXB4-207ENST00000498212 BTG4Q9NY30 223 aa12.09□□□□□ -0.47
HMGXB4-207ENST00000498212 BRD4O60885 1362 aaPredicted RBP12.08□□□□□ -0.48
HMGXB4-207ENST00000498212 NUTM2GQ5VZR2 741 aa12.08□□□□□ -0.48
HMGXB4-207ENST00000498212 ABTB2Q8N961 1025 aa12.08□□□□□ -0.48
HMGXB4-207ENST00000498212 PRDM11Q9NQV5 511 aa12.08□□□□□ -0.48
HMGXB4-207ENST00000498212 KIAA0232Q92628 1395 aa12.07□□□□□ -0.48
HMGXB4-207ENST00000498212 PIK3C2AO00443 1686 aa12.07□□□□□ -0.48
HMGXB4-207ENST00000498212 USP6P35125 1406 aa12.07□□□□□ -0.48
HMGXB4-207ENST00000498212 NCBP3Q53F19 620 aaKnown RBP12.07□□□□□ -0.48
HMGXB4-207ENST00000498212 MON2Q7Z3U7 1717 aa12.07□□□□□ -0.48
HMGXB4-207ENST00000498212 CARD11Q9BXL7 1154 aa12.07□□□□□ -0.48
HMGXB4-207ENST00000498212 CABP1Q9NZU7 370 aa12.07□□□□□ -0.48
HMGXB4-207ENST00000498212 LMO7Q8WWI1 1683 aa12.06□□□□□ -0.48
HMGXB4-207ENST00000498212 SBNO2Q9Y2G9 1366 aa12.06□□□□□ -0.48
HMGXB4-207ENST00000498212 SEPT12Q8IYM1 358 aa12.06□□□□□ -0.48
HMGXB4-207ENST00000498212 ONECUT3O60422 494 aaPredicted RBP12.05□□□□□ -0.48
HMGXB4-207ENST00000498212 ZC3H6P61129 1189 aaKnown RBP12.05□□□□□ -0.48
HMGXB4-207ENST00000498212 NLRP13Q86W25 1043 aa12.05□□□□□ -0.48
HMGXB4-207ENST00000498212 USP19O94966 1318 aa12.05□□□□□ -0.48
HMGXB4-207ENST00000498212 THSD7AQ9UPZ6 1657 aa12.04□□□□□ -0.48
HMGXB4-207ENST00000498212 CHRNA2Q15822 529 aa12.04□□□□□ -0.48
HMGXB4-207ENST00000498212 RGPD5Q99666 1765 aa12.03□□□□□ -0.48
HMGXB4-207ENST00000498212 SLIT3O75094 1523 aa12.03□□□□□ -0.48
HMGXB4-207ENST00000498212 A0A0G2JS52 829 aa12.03□□□□□ -0.48
HMGXB4-207ENST00000498212 MYT1Q01538 1121 aa12.03□□□□□ -0.48
HMGXB4-207ENST00000498212 FAM98CQ17RN3 349 aaKnown RBP12.03□□□□□ -0.48
HMGXB4-207ENST00000498212 CCDC125Q86Z20 511 aa12.03□□□□□ -0.48
HMGXB4-207ENST00000498212 SPATA31A5Q5VU36 1347 aa12.03□□□□□ -0.48
HMGXB4-207ENST00000498212 SPATA31A7Q8IWB4 1347 aa12.03□□□□□ -0.48
HMGXB4-207ENST00000498212 CAMTA1Q9Y6Y1 1673 aa12.03□□□□□ -0.48
HMGXB4-207ENST00000498212 CPDO75976 1380 aa12.03□□□□□ -0.48
HMGXB4-207ENST00000498212 SSH2Q76I76 1423 aa12.03□□□□□ -0.48
HMGXB4-207ENST00000498212 EP400Q96L91 3159 aa12.02□□□□□ -0.48
HMGXB4-207ENST00000498212 GCP02774 474 aa12.02□□□□□ -0.49
HMGXB4-207ENST00000498212 NLRP6P59044 892 aa12.02□□□□□ -0.49
HMGXB4-207ENST00000498212 KRT27Q7Z3Y8 459 aa12.02□□□□□ -0.49
HMGXB4-207ENST00000498212 ZNF692Q9BU19 519 aaPredicted RBP12.02□□□□□ -0.49
HMGXB4-207ENST00000498212 STRN4Q9NRL3 753 aa12.02□□□□□ -0.49
HMGXB4-207ENST00000498212 RGPD1P0DJD0 1748 aa12.01□□□□□ -0.49
HMGXB4-207ENST00000498212 COL18A1P39060 1754 aa12.01□□□□□ -0.49
HMGXB4-207ENST00000498212 NPM3O75607 178 aaKnown RBP12.01□□□□□ -0.49
HMGXB4-207ENST00000498212 BLMP54132 1417 aaPredicted RBP12.01□□□□□ -0.49
HMGXB4-207ENST00000498212 CPSF1Q10570 1443 aaKnown RBP12.01□□□□□ -0.49
HMGXB4-207ENST00000498212 USP54Q70EL1 1684 aa12□□□□□ -0.49
HMGXB4-207ENST00000498212 EVA1CP58658 441 aa12□□□□□ -0.49
HMGXB4-207ENST00000498212 SPATA31A1Q5TZJ5 1347 aa12□□□□□ -0.49
HMGXB4-207ENST00000498212 KTN1Q86UP2 1357 aaKnown RBP12□□□□□ -0.49
HMGXB4-207ENST00000498212 WNK3Q9BYP7 1800 aa12□□□□□ -0.49
HMGXB4-207ENST00000498212 TTC21BQ7Z4L5 1316 aa11.99□□□□□ -0.49
HMGXB4-207ENST00000498212 TTC21AQ8NDW8 1320 aa11.99□□□□□ -0.49
HMGXB4-207ENST00000498212 LTN1O94822 1766 aa11.98□□□□□ -0.49
HMGXB4-207ENST00000498212 PARP4Q9UKK3 1724 aaKnown RBP11.98□□□□□ -0.49
HMGXB4-207ENST00000498212 COL5A2P05997 1499 aaPredicted RBP11.98□□□□□ -0.49
HMGXB4-207ENST00000498212 TNS1Q9HBL0 1735 aaKnown RBP11.97□□□□□ -0.49
HMGXB4-207ENST00000498212 CD163L1Q9NR16 1453 aa11.97□□□□□ -0.49
HMGXB4-207ENST00000498212 ZBTB7CA1YPR0 619 aa11.97□□□□□ -0.49
HMGXB4-207ENST00000498212 SF3B2Q13435 895 aaKnown RBP11.97□□□□□ -0.49
HMGXB4-207ENST00000498212 USP35Q9P2H5 1018 aa11.97□□□□□ -0.49
HMGXB4-207ENST00000498212 AATKQ6ZMQ8 1374 aa11.96□□□□□ -0.49
HMGXB4-207ENST00000498212 ST20-MTHFSA0A0A6YYL1 179 aa11.96□□□□□ -0.49
HMGXB4-207ENST00000498212 LARP1Q6PKG0 1096 aaKnown RBP11.96□□□□□ -0.49
HMGXB4-207ENST00000498212 KCNH5Q8NCM2 988 aa11.96□□□□□ -0.49
HMGXB4-207ENST00000498212 TMC1Q8TDI8 760 aa11.96□□□□□ -0.49
HMGXB4-207ENST00000498212 PUS7Q96PZ0 661 aaKnown RBP11.96□□□□□ -0.49
HMGXB4-207ENST00000498212 NFAT5O94916 1531 aa11.96□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms