RNA–Protein interactions for RNA: ENST00000497977.1

PTPRN-218, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 3

Gene PTPRN, Length 701 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-218ENST00000497977 RALGAPBQ86X10 1494 aa14.5□□□□□ -0.09
PTPRN-218ENST00000497977 ARHGEF28Q8N1W1 1705 aaKnown RBP14.49□□□□□ -0.09
PTPRN-218ENST00000497977 NLRP6P59044 892 aa14.49□□□□□ -0.09
PTPRN-218ENST00000497977 UNC5CLQ8IV45 518 aa14.49□□□□□ -0.09
PTPRN-218ENST00000497977 EIF4G2P78344 907 aaKnown RBP eCLIP14.48□□□□□ -0.09
PTPRN-218ENST00000497977 KCNH5Q8NCM2 988 aa14.48□□□□□ -0.09
PTPRN-218ENST00000497977 CABLES1Q8TDN4 633 aa14.48□□□□□ -0.09
PTPRN-218ENST00000497977 KIF1AQ12756 1690 aa14.47□□□□□ -0.09
PTPRN-218ENST00000497977 EVA1CP58658 441 aa14.47□□□□□ -0.09
PTPRN-218ENST00000497977 NHSL1Q5SYE7 1610 aa14.47□□□□□ -0.09
PTPRN-218ENST00000497977 FMN2Q9NZ56 1722 aa14.46□□□□□ -0.09
PTPRN-218ENST00000497977 TTC21AQ8NDW8 1320 aa14.46□□□□□ -0.09
PTPRN-218ENST00000497977 PRDM11Q9NQV5 511 aa14.46□□□□□ -0.09
PTPRN-218ENST00000497977 CCDC9Q9Y3X0 531 aaKnown RBP14.46□□□□□ -0.09
PTPRN-218ENST00000497977 NINLQ9Y2I6 1382 aa14.46□□□□□ -0.1
PTPRN-218ENST00000497977 ATP7BP35670 1465 aa14.45□□□□□ -0.1
PTPRN-218ENST00000497977 FAM83GA6ND36 823 aa14.45□□□□□ -0.1
PTPRN-218ENST00000497977 GJD4Q96KN9 370 aaPredicted RBP14.45□□□□□ -0.1
PTPRN-218ENST00000497977 QRICH2Q9H0J4 1663 aa14.45□□□□□ -0.1
PTPRN-218ENST00000497977 GCP02774 474 aa14.44□□□□□ -0.1
PTPRN-218ENST00000497977 TESK2Q96S53 571 aa14.44□□□□□ -0.1
PTPRN-218ENST00000497977 SHPRHQ149N8 1683 aa14.44□□□□□ -0.1
PTPRN-218ENST00000497977 USP47Q96K76 1375 aa14.44□□□□□ -0.1
PTPRN-218ENST00000497977 LRP6O75581 1613 aa14.44□□□□□ -0.1
PTPRN-218ENST00000497977 NUTM2GQ5VZR2 741 aa14.43□□□□□ -0.1
PTPRN-218ENST00000497977 SLC12A5Q9H2X9 1139 aa14.43□□□□□ -0.1
PTPRN-218ENST00000497977 KTN1Q86UP2 1357 aaKnown RBP14.43□□□□□ -0.1
PTPRN-218ENST00000497977 TTC21BQ7Z4L5 1316 aa14.42□□□□□ -0.1
PTPRN-218ENST00000497977 VPS72Q15906 364 aa14.42□□□□□ -0.1
PTPRN-218ENST00000497977 BTG4Q9NY30 223 aa14.42□□□□□ -0.1
PTPRN-218ENST00000497977 ZC3H6P61129 1189 aaKnown RBP14.41□□□□□ -0.1
PTPRN-218ENST00000497977 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.39□□□□□ -0.11
PTPRN-218ENST00000497977 USP6P35125 1406 aa14.39□□□□□ -0.11
PTPRN-218ENST00000497977 COG3Q96JB2 828 aa14.37□□□□□ -0.11
PTPRN-218ENST00000497977 A0A0G2JS52 829 aa14.36□□□□□ -0.11
PTPRN-218ENST00000497977 MYT1Q01538 1121 aa14.36□□□□□ -0.11
PTPRN-218ENST00000497977 CCDC125Q86Z20 511 aa14.36□□□□□ -0.11
PTPRN-218ENST00000497977 CDK12Q9NYV4 1490 aaPredicted RBP14.36□□□□□ -0.11
PTPRN-218ENST00000497977 USP19O94966 1318 aa14.36□□□□□ -0.11
PTPRN-218ENST00000497977 KIAA0232Q92628 1395 aa14.35□□□□□ -0.11
PTPRN-218ENST00000497977 CPSF1Q10570 1443 aaKnown RBP14.35□□□□□ -0.11
PTPRN-218ENST00000497977 COL22A1Q8NFW1 1626 aaPredicted RBP14.35□□□□□ -0.11
PTPRN-218ENST00000497977 ZBTB7CA1YPR0 619 aa14.35□□□□□ -0.11
PTPRN-218ENST00000497977 ONECUT3O60422 494 aaPredicted RBP14.35□□□□□ -0.11
PTPRN-218ENST00000497977 POLR3GLQ9BT43 218 aa14.35□□□□□ -0.11
PTPRN-218ENST00000497977 STRN4Q9NRL3 753 aa14.35□□□□□ -0.11
PTPRN-218ENST00000497977 BCL9LQ86UU0 1499 aa14.35□□□□□ -0.11
PTPRN-218ENST00000497977 CPDO75976 1380 aa14.34□□□□□ -0.11
PTPRN-218ENST00000497977 USP32Q8NFA0 1604 aa14.34□□□□□ -0.11
PTPRN-218ENST00000497977 HSPA5P11021 654 aaKnown RBP14.34□□□□□ -0.11
PTPRN-218ENST00000497977 CHRNA2Q15822 529 aa14.34□□□□□ -0.11
PTPRN-218ENST00000497977 THRAP3Q9Y2W1 955 aaKnown RBP14.34□□□□□ -0.11
PTPRN-218ENST00000497977 ATRNO75882 1429 aa14.33□□□□□ -0.11
PTPRN-218ENST00000497977 SLIT2O94813 1529 aa14.33□□□□□ -0.12
PTPRN-218ENST00000497977 ZEB1P37275 1124 aaPredicted RBP14.33□□□□□ -0.12
PTPRN-218ENST00000497977 EDC4Q6P2E9 1401 aaKnown RBP14.32□□□□□ -0.12
PTPRN-218ENST00000497977 C11orf95C9JLR9 678 aaPredicted RBP14.32□□□□□ -0.12
PTPRN-218ENST00000497977 ARHGEF25Q86VW2 580 aa14.32□□□□□ -0.12
PTPRN-218ENST00000497977 SEPT12Q8IYM1 358 aa14.32□□□□□ -0.12
PTPRN-218ENST00000497977 ANKRD36BQ8N2N9 1353 aa14.32□□□□□ -0.12
PTPRN-218ENST00000497977 SSH2Q76I76 1423 aa14.32□□□□□ -0.12
PTPRN-218ENST00000497977 SOX12O15370 315 aa14.31□□□□□ -0.12
PTPRN-218ENST00000497977 CSB-PGBD3P0DP91 1061 aa14.31□□□□□ -0.12
PTPRN-218ENST00000497977 SF3B2Q13435 895 aaKnown RBP14.31□□□□□ -0.12
PTPRN-218ENST00000497977 ITSN1Q15811 1721 aa14.31□□□□□ -0.12
PTPRN-218ENST00000497977 AATKQ6ZMQ8 1374 aa14.31□□□□□ -0.12
PTPRN-218ENST00000497977 USP31Q70CQ4 1352 aa14.31□□□□□ -0.12
PTPRN-218ENST00000497977 TOM1L2Q6ZVM7 507 aa14.3□□□□□ -0.12
PTPRN-218ENST00000497977 NME9Q86XW9 330 aa14.3□□□□□ -0.12
PTPRN-218ENST00000497977 CDCA7Q9BWT1 371 aaPredicted RBP14.3□□□□□ -0.12
PTPRN-218ENST00000497977 SPATA31A5Q5VU36 1347 aa14.3□□□□□ -0.12
PTPRN-218ENST00000497977 SPATA31A7Q8IWB4 1347 aa14.3□□□□□ -0.12
PTPRN-218ENST00000497977 PDE3BQ13370 1112 aa14.29□□□□□ -0.12
PTPRN-218ENST00000497977 FAM98CQ17RN3 349 aaKnown RBP14.29□□□□□ -0.12
PTPRN-218ENST00000497977 BARGINQ6ZT62 677 aa14.29□□□□□ -0.12
PTPRN-218ENST00000497977 KRT27Q7Z3Y8 459 aa14.29□□□□□ -0.12
PTPRN-218ENST00000497977 TCP11L2Q8N4U5 519 aa14.29□□□□□ -0.12
PTPRN-218ENST00000497977 A0A1W2PP64 1363 aa14.28□□□□□ -0.12
PTPRN-218ENST00000497977 CGNL1Q0VF96 1302 aa14.28□□□□□ -0.12
PTPRN-218ENST00000497977 USP35Q9P2H5 1018 aa14.28□□□□□ -0.12
PTPRN-218ENST00000497977 RGPD8O14715 1765 aaPredicted RBP14.27□□□□□ -0.12
PTPRN-218ENST00000497977 SPATA31A1Q5TZJ5 1347 aa14.27□□□□□ -0.12
PTPRN-218ENST00000497977 AMPHP49418 695 aa14.27□□□□□ -0.13
PTPRN-218ENST00000497977 UPF1Q92900 1129 aaKnown RBP eCLIP14.27□□□□□ -0.13
PTPRN-218ENST00000497977 FYB1O15117 783 aa14.26□□□□□ -0.13
PTPRN-218ENST00000497977 LARP1Q6PKG0 1096 aaKnown RBP14.26□□□□□ -0.13
PTPRN-218ENST00000497977 KNSTRNQ9Y448 316 aa14.25□□□□□ -0.13
PTPRN-218ENST00000497977 TOPAZ1Q8N9V7 1692 aa14.25□□□□□ -0.13
PTPRN-218ENST00000497977 IP6K1Q92551 441 aa14.24□□□□□ -0.13
PTPRN-218ENST00000497977 CARD10Q9BWT7 1032 aa14.24□□□□□ -0.13
PTPRN-218ENST00000497977 PANK3Q9H999 370 aa14.24□□□□□ -0.13
PTPRN-218ENST00000497977 WDR17Q8IZU2 1322 aa14.23□□□□□ -0.13
PTPRN-218ENST00000497977 EXOC5O00471 708 aa14.23□□□□□ -0.13
PTPRN-218ENST00000497977 FAM196AQ6ZSG2 479 aa14.23□□□□□ -0.13
PTPRN-218ENST00000497977 GGNBP2Q9H3C7 697 aa14.23□□□□□ -0.13
PTPRN-218ENST00000497977 ZRANB1Q9UGI0 708 aa14.23□□□□□ -0.13
PTPRN-218ENST00000497977 NLRP2Q9NX02 1062 aa14.22□□□□□ -0.13
PTPRN-218ENST00000497977 AXIN2Q9Y2T1 843 aa14.22□□□□□ -0.13
PTPRN-218ENST00000497977 MYOM1P52179 1685 aa14.22□□□□□ -0.13
PTPRN-218ENST00000497977 TRPM3Q9HCF6 1732 aaPredicted RBP14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms