RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 PRR20CP86479 221 aa12.64□□□□□ -0.39
SF3B1-212ENST00000496458 PRR20DP86480 221 aa12.64□□□□□ -0.39
SF3B1-212ENST00000496458 PRR20BP86481 221 aa12.64□□□□□ -0.39
SF3B1-212ENST00000496458 PRR20AP86496 221 aa12.64□□□□□ -0.39
SF3B1-212ENST00000496458 HMX1Q9NP08 348 aaPredicted RBP12.64□□□□□ -0.39
SF3B1-212ENST00000496458 WNT7AO00755 349 aa12.63□□□□□ -0.39
SF3B1-212ENST00000496458 NR6A1Q15406 480 aa12.63□□□□□ -0.39
SF3B1-212ENST00000496458 RC3H1Q5TC82 1133 aaKnown RBP12.63□□□□□ -0.39
SF3B1-212ENST00000496458 ZNF511Q8NB15 262 aa12.63□□□□□ -0.39
SF3B1-212ENST00000496458 NRG2O14511 850 aaPredicted RBP12.61□□□□□ -0.39
SF3B1-212ENST00000496458 LAPTM4AQ15012 233 aa12.61□□□□□ -0.39
SF3B1-212ENST00000496458 MRGPRX2Q96LB1 330 aa12.61□□□□□ -0.39
SF3B1-212ENST00000496458 ARMC2Q8NEN0 867 aa12.6□□□□□ -0.39
SF3B1-212ENST00000496458 EHBP1Q8NDI1 1231 aa12.59□□□□□ -0.39
SF3B1-212ENST00000496458 EPS8L1Q8TE68 723 aa12.59□□□□□ -0.39
SF3B1-212ENST00000496458 TMEM132AQ24JP5 1023 aa12.58□□□□□ -0.4
SF3B1-212ENST00000496458 NBPF14Q5TI25 921 aa12.58□□□□□ -0.4
SF3B1-212ENST00000496458 CYP4X1Q8N118 509 aa12.57□□□□□ -0.4
SF3B1-212ENST00000496458 BANK1Q8NDB2 785 aa12.57□□□□□ -0.4
SF3B1-212ENST00000496458 FOXJ1Q92949 421 aa12.57□□□□□ -0.4
SF3B1-212ENST00000496458 AGERQ15109 404 aa12.56□□□□□ -0.4
SF3B1-212ENST00000496458 FKBPLQ9UIM3 349 aa12.56□□□□□ -0.4
SF3B1-212ENST00000496458 TTC24A2A3L6 582 aaPredicted RBP12.54□□□□□ -0.4
SF3B1-212ENST00000496458 TRIM34Q9BYJ4 488 aa12.54□□□□□ -0.4
SF3B1-212ENST00000496458 SNRKQ9NRH2 765 aa12.54□□□□□ -0.4
SF3B1-212ENST00000496458 TOR4AQ9NXH8 423 aa12.54□□□□□ -0.4
SF3B1-212ENST00000496458 FAM187AA6NFU0 413 aa12.53□□□□□ -0.4
SF3B1-212ENST00000496458 Q6ZNB5 142 aa12.53□□□□□ -0.4
SF3B1-212ENST00000496458 BPHLQ86WA6 291 aaPredicted RBP12.52□□□□□ -0.41
SF3B1-212ENST00000496458 MTMR14Q8NCE2 650 aa12.52□□□□□ -0.41
SF3B1-212ENST00000496458 SNIP1Q8TAD8 396 aaKnown RBP12.52□□□□□ -0.41
SF3B1-212ENST00000496458 GPKOWQ92917 476 aaPredicted RBP eCLIP12.52□□□□□ -0.41
SF3B1-212ENST00000496458 GJD4Q96KN9 370 aaPredicted RBP12.52□□□□□ -0.41
SF3B1-212ENST00000496458 VARSP26640 1264 aaKnown RBP12.51□□□□□ -0.41
SF3B1-212ENST00000496458 C4orf48Q5BLP8 95 aa12.51□□□□□ -0.41
SF3B1-212ENST00000496458 PNMA1Q8ND90 353 aa12.51□□□□□ -0.41
SF3B1-212ENST00000496458 SIAH2O43255 324 aa12.5□□□□□ -0.41
SF3B1-212ENST00000496458 PKDCCQ504Y2 493 aa12.5□□□□□ -0.41
SF3B1-212ENST00000496458 SH3BP5LQ7L8J4 393 aa12.5□□□□□ -0.41
SF3B1-212ENST00000496458 TLL2Q9Y6L7 1015 aa12.5□□□□□ -0.41
SF3B1-212ENST00000496458 ZC3H4Q9UPT8 1303 aaKnown RBP12.5□□□□□ -0.41
SF3B1-212ENST00000496458 MAGEB6P1A0A0J9YX57 407 aa12.49□□□□□ -0.41
SF3B1-212ENST00000496458 CARD14Q9BXL6 1004 aa12.49□□□□□ -0.41
SF3B1-212ENST00000496458 J3QL48 77 aa12.48□□□□□ -0.41
SF3B1-212ENST00000496458 ALDH1A1P00352 501 aa12.48□□□□□ -0.41
SF3B1-212ENST00000496458 PDXDC2PQ6P474 469 aa12.48□□□□□ -0.41
SF3B1-212ENST00000496458 SH3RF1Q7Z6J0 888 aa12.48□□□□□ -0.41
SF3B1-212ENST00000496458 FAM174AQ8TBP5 190 aa12.48□□□□□ -0.41
SF3B1-212ENST00000496458 SOCS7O14512 581 aa12.46□□□□□ -0.41
SF3B1-212ENST00000496458 DGAT1O75907 488 aa12.46□□□□□ -0.41
SF3B1-212ENST00000496458 SMPD1P17405 629 aa12.46□□□□□ -0.41
SF3B1-212ENST00000496458 ARHGAP9Q9BRR9 750 aa12.46□□□□□ -0.41
SF3B1-212ENST00000496458 APBB1O00213 710 aa12.44□□□□□ -0.42
SF3B1-212ENST00000496458 PTK2Q05397 1052 aa12.43□□□□□ -0.42
SF3B1-212ENST00000496458 ARID5BQ14865 1188 aa12.43□□□□□ -0.42
SF3B1-212ENST00000496458 C1QTNF2Q9BXJ5 285 aa12.43□□□□□ -0.42
SF3B1-212ENST00000496458 NDUFB9Q9Y6M9 179 aa12.43□□□□□ -0.42
SF3B1-212ENST00000496458 ZBTB33Q86T24 672 aa12.42□□□□□ -0.42
SF3B1-212ENST00000496458 OCSTAMPQ9BR26 566 aa12.42□□□□□ -0.42
SF3B1-212ENST00000496458 WASF2Q9Y6W5 498 aa12.42□□□□□ -0.42
SF3B1-212ENST00000496458 MCM6Q14566 821 aa12.41□□□□□ -0.42
SF3B1-212ENST00000496458 ERFEQ4G0M1 354 aa12.41□□□□□ -0.42
SF3B1-212ENST00000496458 GPSM3Q9Y4H4 160 aa12.41□□□□□ -0.42
SF3B1-212ENST00000496458 LCE2BO14633 110 aa12.4□□□□□ -0.42
SF3B1-212ENST00000496458 MPNDQ8N594 471 aa12.4□□□□□ -0.42
SF3B1-212ENST00000496458 GPR37L1O60883 481 aa12.39□□□□□ -0.43
SF3B1-212ENST00000496458 TRAF7Q6Q0C0 670 aa12.39□□□□□ -0.43
SF3B1-212ENST00000496458 ADAM32Q8TC27 787 aa12.39□□□□□ -0.43
SF3B1-212ENST00000496458 TBC1D2BQ9UPU7 963 aa12.39□□□□□ -0.43
SF3B1-212ENST00000496458 MYT1Q01538 1121 aa12.38□□□□□ -0.43
SF3B1-212ENST00000496458 TRMT44Q8IYL2 757 aaKnown RBP12.38□□□□□ -0.43
SF3B1-212ENST00000496458 HPS1Q92902 700 aa12.38□□□□□ -0.43
SF3B1-212ENST00000496458 CDK15Q96Q40 435 aa12.38□□□□□ -0.43
SF3B1-212ENST00000496458 ADH1CP00326 375 aa12.37□□□□□ -0.43
SF3B1-212ENST00000496458 AVPP01185 164 aa12.37□□□□□ -0.43
SF3B1-212ENST00000496458 SLC10A4Q96EP9 437 aa12.37□□□□□ -0.43
SF3B1-212ENST00000496458 VASH1Q7L8A9 365 aaPredicted RBP12.36□□□□□ -0.43
SF3B1-212ENST00000496458 PRM3Q9NNZ6 103 aa12.36□□□□□ -0.43
SF3B1-212ENST00000496458 ZBBXA8MT70 800 aa12.35□□□□□ -0.43
SF3B1-212ENST00000496458 FBXO45P0C2W1 286 aa12.35□□□□□ -0.43
SF3B1-212ENST00000496458 NNTQ13423 1086 aa12.35□□□□□ -0.43
SF3B1-212ENST00000496458 ST8SIA5O15466 376 aa12.34□□□□□ -0.43
SF3B1-212ENST00000496458 MAP4K5Q9Y4K4 846 aa12.34□□□□□ -0.43
SF3B1-212ENST00000496458 FSHRP23945 695 aa12.33□□□□□ -0.44
SF3B1-212ENST00000496458 GDPD2Q9HCC8 539 aa12.33□□□□□ -0.44
SF3B1-212ENST00000496458 GRM5P41594 1212 aa12.32□□□□□ -0.44
SF3B1-212ENST00000496458 AXIN1O15169 862 aa12.31□□□□□ -0.44
SF3B1-212ENST00000496458 FLIIQ13045 1269 aa12.31□□□□□ -0.44
SF3B1-212ENST00000496458 NR1H3Q13133 447 aa12.31□□□□□ -0.44
SF3B1-212ENST00000496458 NR5A1Q13285 461 aa12.31□□□□□ -0.44
SF3B1-212ENST00000496458 CTC1Q2NKJ3 1217 aa12.31□□□□□ -0.44
SF3B1-212ENST00000496458 DZIP3Q86Y13 1208 aaKnown RBP12.31□□□□□ -0.44
SF3B1-212ENST00000496458 AAASQ9NRG9 546 aa12.31□□□□□ -0.44
SF3B1-212ENST00000496458 NR3C2P08235 984 aa12.3□□□□□ -0.44
SF3B1-212ENST00000496458 ABL2P42684 1182 aa12.3□□□□□ -0.44
SF3B1-212ENST00000496458 CRIPAKQ8N1N5 446 aa12.3□□□□□ -0.44
SF3B1-212ENST00000496458 CDV3Q9UKY7 258 aaKnown RBP12.29□□□□□ -0.44
SF3B1-212ENST00000496458 PCDHB9Q9Y5E1 797 aa12.29□□□□□ -0.44
SF3B1-212ENST00000496458 SMCPP49901 116 aaPredicted RBP12.28□□□□□ -0.44
SF3B1-212ENST00000496458 KCTD15Q96SI1 283 aaPredicted RBP12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms