RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 RALGAPBQ86X10 1494 aa18.21■□□□□ 0.51
PTPRF-214ENST00000496043 ONECUT3O60422 494 aaPredicted RBP18.21■□□□□ 0.51
PTPRF-214ENST00000496043 CCDC125Q86Z20 511 aa18.21■□□□□ 0.51
PTPRF-214ENST00000496043 ROCK2O75116 1388 aaKnown RBP18.2■□□□□ 0.5
PTPRF-214ENST00000496043 NUTM2GQ5VZR2 741 aa18.2■□□□□ 0.5
PTPRF-214ENST00000496043 SEPT12Q8IYM1 358 aa18.2■□□□□ 0.5
PTPRF-214ENST00000496043 ABTB2Q8N961 1025 aa18.2■□□□□ 0.5
PTPRF-214ENST00000496043 PRDM11Q9NQV5 511 aa18.2■□□□□ 0.5
PTPRF-214ENST00000496043 TRPM3Q9HCF6 1732 aaPredicted RBP18.2■□□□□ 0.5
PTPRF-214ENST00000496043 EVC2Q86UK5 1308 aa18.2■□□□□ 0.5
PTPRF-214ENST00000496043 CABP1Q9NZU7 370 aa18.19■□□□□ 0.5
PTPRF-214ENST00000496043 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.18■□□□□ 0.5
PTPRF-214ENST00000496043 ZC3H6P61129 1189 aaKnown RBP18.17■□□□□ 0.5
PTPRF-214ENST00000496043 NLRP13Q86W25 1043 aa18.17■□□□□ 0.5
PTPRF-214ENST00000496043 ALS2Q96Q42 1657 aa18.17■□□□□ 0.5
PTPRF-214ENST00000496043 ITSN1Q15811 1721 aa18.17■□□□□ 0.5
PTPRF-214ENST00000496043 PPIP5K1Q6PFW1 1433 aa18.16■□□□□ 0.5
PTPRF-214ENST00000496043 BRD4O60885 1362 aaPredicted RBP18.15■□□□□ 0.5
PTPRF-214ENST00000496043 GLI3P10071 1580 aa18.14■□□□□ 0.49
PTPRF-214ENST00000496043 A0A0G2JS52 829 aa18.14■□□□□ 0.49
PTPRF-214ENST00000496043 MYT1Q01538 1121 aa18.14■□□□□ 0.49
PTPRF-214ENST00000496043 CHRNA2Q15822 529 aa18.14■□□□□ 0.49
PTPRF-214ENST00000496043 FAM98CQ17RN3 349 aaKnown RBP18.14■□□□□ 0.49
PTPRF-214ENST00000496043 KRT27Q7Z3Y8 459 aa18.14■□□□□ 0.49
PTPRF-214ENST00000496043 CARD11Q9BXL7 1154 aa18.14■□□□□ 0.49
PTPRF-214ENST00000496043 TONSLQ96HA7 1378 aa18.14■□□□□ 0.49
PTPRF-214ENST00000496043 NWD2Q9ULI1 1742 aa18.13■□□□□ 0.49
PTPRF-214ENST00000496043 EVA1CP58658 441 aa18.13■□□□□ 0.49
PTPRF-214ENST00000496043 ZNF692Q9BU19 519 aaPredicted RBP18.13■□□□□ 0.49
PTPRF-214ENST00000496043 KIAA0232Q92628 1395 aa18.13■□□□□ 0.49
PTPRF-214ENST00000496043 SPATA31A5Q5VU36 1347 aa18.12■□□□□ 0.49
PTPRF-214ENST00000496043 SPATA31A7Q8IWB4 1347 aa18.12■□□□□ 0.49
PTPRF-214ENST00000496043 ABCA3Q99758 1704 aa18.12■□□□□ 0.49
PTPRF-214ENST00000496043 GCP02774 474 aa18.11■□□□□ 0.49
PTPRF-214ENST00000496043 STRN4Q9NRL3 753 aa18.11■□□□□ 0.49
PTPRF-214ENST00000496043 TRPM1Q7Z4N2 1603 aa18.11■□□□□ 0.49
PTPRF-214ENST00000496043 COL14A1Q05707 1796 aaKnown RBP18.1■□□□□ 0.49
PTPRF-214ENST00000496043 PLCH1Q4KWH8 1693 aa18.1■□□□□ 0.49
PTPRF-214ENST00000496043 NLRP6P59044 892 aa18.1■□□□□ 0.49
PTPRF-214ENST00000496043 TOPAZ1Q8N9V7 1692 aa18.09■□□□□ 0.49
PTPRF-214ENST00000496043 SF3B2Q13435 895 aaKnown RBP18.09■□□□□ 0.49
PTPRF-214ENST00000496043 QRICH2Q9H0J4 1663 aa18.09■□□□□ 0.49
PTPRF-214ENST00000496043 USP19O94966 1318 aa18.08■□□□□ 0.49
PTPRF-214ENST00000496043 USP6P35125 1406 aa18.06■□□□□ 0.48
PTPRF-214ENST00000496043 SPATA31A1Q5TZJ5 1347 aa18.06■□□□□ 0.48
PTPRF-214ENST00000496043 ZRANB1Q9UGI0 708 aa18.06■□□□□ 0.48
PTPRF-214ENST00000496043 BLMP54132 1417 aaPredicted RBP18.06■□□□□ 0.48
PTPRF-214ENST00000496043 CPDO75976 1380 aa18.05■□□□□ 0.48
PTPRF-214ENST00000496043 TTC21BQ7Z4L5 1316 aa18.04■□□□□ 0.48
PTPRF-214ENST00000496043 CRYBG1Q9Y4K1 1723 aa18.04■□□□□ 0.48
PTPRF-214ENST00000496043 ZBTB7CA1YPR0 619 aa18.03■□□□□ 0.48
PTPRF-214ENST00000496043 USP35Q9P2H5 1018 aa18.03■□□□□ 0.48
PTPRF-214ENST00000496043 NRAPQ86VF7 1730 aa18.03■□□□□ 0.48
PTPRF-214ENST00000496043 SBNO2Q9Y2G9 1366 aa18.03■□□□□ 0.48
PTPRF-214ENST00000496043 LARP1Q6PKG0 1096 aaKnown RBP18.02■□□□□ 0.48
PTPRF-214ENST00000496043 SSH2Q76I76 1423 aa18.02■□□□□ 0.48
PTPRF-214ENST00000496043 TTC21AQ8NDW8 1320 aa18.01■□□□□ 0.47
PTPRF-214ENST00000496043 BRWD3Q6RI45 1802 aa18.01■□□□□ 0.47
PTPRF-214ENST00000496043 SLC24A1O60721 1099 aa18.01■□□□□ 0.47
PTPRF-214ENST00000496043 BARGINQ6ZT62 677 aa18.01■□□□□ 0.47
PTPRF-214ENST00000496043 DEFB132Q7Z7B7 95 aa18.01■□□□□ 0.47
PTPRF-214ENST00000496043 KCNH5Q8NCM2 988 aa18.01■□□□□ 0.47
PTPRF-214ENST00000496043 TMC1Q8TDI8 760 aa18.01■□□□□ 0.47
PTPRF-214ENST00000496043 PHRF1Q9P1Y6 1649 aaKnown RBP18.01■□□□□ 0.47
PTPRF-214ENST00000496043 TCP11L2Q8N4U5 519 aa18■□□□□ 0.47
PTPRF-214ENST00000496043 PUS7Q96PZ0 661 aaKnown RBP18■□□□□ 0.47
PTPRF-214ENST00000496043 THRAP3Q9Y2W1 955 aaKnown RBP18■□□□□ 0.47
PTPRF-214ENST00000496043 KTN1Q86UP2 1357 aaKnown RBP18■□□□□ 0.47
PTPRF-214ENST00000496043 FAM182BQ5T319 152 aa17.99■□□□□ 0.47
PTPRF-214ENST00000496043 CAMTA1Q9Y6Y1 1673 aa17.99■□□□□ 0.47
PTPRF-214ENST00000496043 CPSF1Q10570 1443 aaKnown RBP17.98■□□□□ 0.47
PTPRF-214ENST00000496043 BAG6P46379 1132 aa17.98■□□□□ 0.47
PTPRF-214ENST00000496043 PDE3BQ13370 1112 aa17.98■□□□□ 0.47
PTPRF-214ENST00000496043 HDGFL2Q7Z4V5 671 aaPredicted RBP17.98■□□□□ 0.47
PTPRF-214ENST00000496043 SLC12A5Q9H2X9 1139 aa17.98■□□□□ 0.47
PTPRF-214ENST00000496043 AATKQ6ZMQ8 1374 aa17.98■□□□□ 0.47
PTPRF-214ENST00000496043 ST20-MTHFSA0A0A6YYL1 179 aa17.97■□□□□ 0.47
PTPRF-214ENST00000496043 FAM196AQ6ZSG2 479 aa17.97■□□□□ 0.47
PTPRF-214ENST00000496043 NRKQ7Z2Y5 1582 aa17.96■□□□□ 0.47
PTPRF-214ENST00000496043 ARHGEF25Q86VW2 580 aa17.96■□□□□ 0.47
PTPRF-214ENST00000496043 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.96■□□□□ 0.47
PTPRF-214ENST00000496043 TERF2IPQ9NYB0 399 aa17.96■□□□□ 0.47
PTPRF-214ENST00000496043 SOX12O15370 315 aa17.95■□□□□ 0.46
PTPRF-214ENST00000496043 TOM1L2Q6ZVM7 507 aa17.94■□□□□ 0.46
PTPRF-214ENST00000496043 AXIN2Q9Y2T1 843 aa17.94■□□□□ 0.46
PTPRF-214ENST00000496043 TESK2Q96S53 571 aa17.93■□□□□ 0.46
PTPRF-214ENST00000496043 PCGF6Q9BYE7 350 aa17.93■□□□□ 0.46
PTPRF-214ENST00000496043 TIMELESSQ9UNS1 1208 aa17.93■□□□□ 0.46
PTPRF-214ENST00000496043 SLIT3O75094 1523 aa17.93■□□□□ 0.46
PTPRF-214ENST00000496043 EN1Q05925 392 aaPredicted RBP17.92■□□□□ 0.46
PTPRF-214ENST00000496043 EP400Q96L91 3159 aa17.91■□□□□ 0.46
PTPRF-214ENST00000496043 CRB1P82279 1406 aa17.91■□□□□ 0.46
PTPRF-214ENST00000496043 COL5A2P05997 1499 aaPredicted RBP17.91■□□□□ 0.46
PTPRF-214ENST00000496043 TRIM37O94972 964 aa17.91■□□□□ 0.46
PTPRF-214ENST00000496043 NME9Q86XW9 330 aa17.91■□□□□ 0.46
PTPRF-214ENST00000496043 USP31Q70CQ4 1352 aa17.91■□□□□ 0.46
PTPRF-214ENST00000496043 LMO7Q8WWI1 1683 aa17.9■□□□□ 0.46
PTPRF-214ENST00000496043 THSD7AQ9UPZ6 1657 aa17.9■□□□□ 0.46
PTPRF-214ENST00000496043 CSB-PGBD3P0DP91 1061 aa17.9■□□□□ 0.46
PTPRF-214ENST00000496043 WDR17Q8IZU2 1322 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms