RNA–Protein interactions for RNA: ENST00000495172.1

GARNL3-219, Transcript of GTPase activating Rap/RanGAP domain like 3, humanhuman

TSL 4

Gene GARNL3, Length 737 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GARNL3-219ENST00000495172 USP35Q9P2H5 1018 aa14.09□□□□□ -0.15
GARNL3-219ENST00000495172 COL14A1Q05707 1796 aaKnown RBP14.08□□□□□ -0.16
GARNL3-219ENST00000495172 HFM1A2PYH4 1435 aa14.07□□□□□ -0.16
GARNL3-219ENST00000495172 TECPR2O15040 1411 aa14.07□□□□□ -0.16
GARNL3-219ENST00000495172 PCNTO95613 3336 aa14.06□□□□□ -0.16
GARNL3-219ENST00000495172 KIF1AQ12756 1690 aa14.06□□□□□ -0.16
GARNL3-219ENST00000495172 SPATA31A1Q5TZJ5 1347 aa14.06□□□□□ -0.16
GARNL3-219ENST00000495172 FMN2Q9NZ56 1722 aa14.06□□□□□ -0.16
GARNL3-219ENST00000495172 PLEKHH1Q9ULM0 1364 aa14.06□□□□□ -0.16
GARNL3-219ENST00000495172 SGIP1Q9BQI5 828 aa14.05□□□□□ -0.16
GARNL3-219ENST00000495172 STRN4Q9NRL3 753 aa14.05□□□□□ -0.16
GARNL3-219ENST00000495172 ZNF526Q8TF50 670 aaPredicted RBP14.04□□□□□ -0.16
GARNL3-219ENST00000495172 STK26Q9P289 416 aa14.04□□□□□ -0.16
GARNL3-219ENST00000495172 PDE3BQ13370 1112 aa14.03□□□□□ -0.16
GARNL3-219ENST00000495172 CHRNA2Q15822 529 aa14.03□□□□□ -0.16
GARNL3-219ENST00000495172 KLHL34Q8N239 644 aa14.03□□□□□ -0.16
GARNL3-219ENST00000495172 PROM2Q8N271 834 aa14.03□□□□□ -0.16
GARNL3-219ENST00000495172 BCL11BQ9C0K0 894 aaPredicted RBP14.03□□□□□ -0.16
GARNL3-219ENST00000495172 ATP10DQ9P241 1426 aa14.02□□□□□ -0.16
GARNL3-219ENST00000495172 CLTCL1P53675 1640 aa14.01□□□□□ -0.17
GARNL3-219ENST00000495172 PRAG1Q86YV5 1406 aa14.01□□□□□ -0.17
GARNL3-219ENST00000495172 PHF8Q9UPP1 1060 aa14.01□□□□□ -0.17
GARNL3-219ENST00000495172 PRELPP51888 382 aa14□□□□□ -0.17
GARNL3-219ENST00000495172 ARXQ96QS3 562 aa14□□□□□ -0.17
GARNL3-219ENST00000495172 RRBP1Q9P2E9 1410 aaKnown RBP13.99□□□□□ -0.17
GARNL3-219ENST00000495172 PSME1Q06323 249 aa13.99□□□□□ -0.17
GARNL3-219ENST00000495172 TNS4Q8IZW8 715 aa13.99□□□□□ -0.17
GARNL3-219ENST00000495172 PMFBP1Q8TBY8 1022 aa13.99□□□□□ -0.17
GARNL3-219ENST00000495172 SBNO1A3KN83 1393 aa13.98□□□□□ -0.17
GARNL3-219ENST00000495172 ARHGEF10O15013 1369 aa13.98□□□□□ -0.17
GARNL3-219ENST00000495172 SBF2Q86WG5 1849 aa13.97□□□□□ -0.17
GARNL3-219ENST00000495172 DNAJC5GQ8N7S2 189 aa13.97□□□□□ -0.17
GARNL3-219ENST00000495172 NLGN2Q8NFZ4 835 aa13.97□□□□□ -0.17
GARNL3-219ENST00000495172 PRDM11Q9NQV5 511 aa13.97□□□□□ -0.17
GARNL3-219ENST00000495172 CRYBG1Q9Y4K1 1723 aa13.97□□□□□ -0.17
GARNL3-219ENST00000495172 TRPM3Q9HCF6 1732 aaPredicted RBP13.96□□□□□ -0.17
GARNL3-219ENST00000495172 IFT172Q9UG01 1749 aa13.96□□□□□ -0.17
GARNL3-219ENST00000495172 YBX3P16989 372 aaKnown RBP eCLIP13.96□□□□□ -0.17
GARNL3-219ENST00000495172 MTFR1LQ9H019 292 aa13.96□□□□□ -0.17
GARNL3-219ENST00000495172 NUP155O75694 1391 aa13.96□□□□□ -0.18
GARNL3-219ENST00000495172 NRXN1Q9ULB1 1477 aa13.95□□□□□ -0.18
GARNL3-219ENST00000495172 PPP4R3CPQ6ZMV5 832 aa13.95□□□□□ -0.18
GARNL3-219ENST00000495172 GPBP1L1Q9HC44 474 aaPredicted RBP13.95□□□□□ -0.18
GARNL3-219ENST00000495172 RGPD3A6NKT7 1758 aaPredicted RBP13.95□□□□□ -0.18
GARNL3-219ENST00000495172 RGPD4Q7Z3J3 1758 aa13.95□□□□□ -0.18
GARNL3-219ENST00000495172 ALS2Q96Q42 1657 aa13.95□□□□□ -0.18
GARNL3-219ENST00000495172 HTRA3P83110 453 aa13.94□□□□□ -0.18
GARNL3-219ENST00000495172 PEAK1Q9H792 1746 aa13.94□□□□□ -0.18
GARNL3-219ENST00000495172 KIAA0232Q92628 1395 aa13.94□□□□□ -0.18
GARNL3-219ENST00000495172 SLC15A2Q16348 729 aa13.93□□□□□ -0.18
GARNL3-219ENST00000495172 TMEM132EQ6IEE7 984 aa13.93□□□□□ -0.18
GARNL3-219ENST00000495172 LARP1Q6PKG0 1096 aaKnown RBP13.92□□□□□ -0.18
GARNL3-219ENST00000495172 STK32BQ9NY57 414 aa13.92□□□□□ -0.18
GARNL3-219ENST00000495172 KIF1BO60333 1816 aa13.92□□□□□ -0.18
GARNL3-219ENST00000495172 PLSCR1O15162 318 aa13.91□□□□□ -0.18
GARNL3-219ENST00000495172 ZC3H6P61129 1189 aaKnown RBP13.91□□□□□ -0.18
GARNL3-219ENST00000495172 FAM50AQ14320 339 aaKnown RBP13.91□□□□□ -0.18
GARNL3-219ENST00000495172 MAP3K5Q99683 1374 aa13.91□□□□□ -0.18
GARNL3-219ENST00000495172 VGFO15240 615 aaPredicted RBP13.89□□□□□ -0.19
GARNL3-219ENST00000495172 BARGINQ6ZT62 677 aa13.89□□□□□ -0.19
GARNL3-219ENST00000495172 SSH2Q76I76 1423 aa13.89□□□□□ -0.19
GARNL3-219ENST00000495172 SAFB2Q14151 953 aaKnown RBP eCLIP13.88□□□□□ -0.19
GARNL3-219ENST00000495172 TXNRD1Q16881 649 aa13.88□□□□□ -0.19
GARNL3-219ENST00000495172 VPS8Q8N3P4 1428 aa13.88□□□□□ -0.19
GARNL3-219ENST00000495172 PPLO60437 1756 aa13.87□□□□□ -0.19
GARNL3-219ENST00000495172 NUTM2GQ5VZR2 741 aa13.87□□□□□ -0.19
GARNL3-219ENST00000495172 PARP4Q9UKK3 1724 aaKnown RBP13.87□□□□□ -0.19
GARNL3-219ENST00000495172 APLP1P51693 650 aa13.86□□□□□ -0.19
GARNL3-219ENST00000495172 EVA1CP58658 441 aa13.86□□□□□ -0.19
GARNL3-219ENST00000495172 TCP11L2Q8N4U5 519 aa13.86□□□□□ -0.19
GARNL3-219ENST00000495172 OVOS2A0A0G2JMS6 1433 aa13.86□□□□□ -0.19
GARNL3-219ENST00000495172 OVOS2A0A0J9YW53 1432 aa13.86□□□□□ -0.19
GARNL3-219ENST00000495172 OVOS2Q6IE36 1432 aa13.86□□□□□ -0.19
GARNL3-219ENST00000495172 ADGRF5Q8IZF2 1346 aa13.86□□□□□ -0.19
GARNL3-219ENST00000495172 KIF3CO14782 793 aa13.85□□□□□ -0.19
GARNL3-219ENST00000495172 PAK3O75914 559 aaPredicted RBP13.85□□□□□ -0.19
GARNL3-219ENST00000495172 PHRF1Q9P1Y6 1649 aaKnown RBP13.85□□□□□ -0.19
GARNL3-219ENST00000495172 ADCY9O60503 1353 aa13.83□□□□□ -0.19
GARNL3-219ENST00000495172 LRRC37A3O60309 1634 aa13.83□□□□□ -0.2
GARNL3-219ENST00000495172 ZNF827Q17R98 1081 aa13.83□□□□□ -0.2
GARNL3-219ENST00000495172 KNDC1Q76NI1 1749 aa13.83□□□□□ -0.2
GARNL3-219ENST00000495172 WDR90Q96KV7 1748 aa13.82□□□□□ -0.2
GARNL3-219ENST00000495172 MAPK8IP2Q13387 824 aaPredicted RBP13.82□□□□□ -0.2
GARNL3-219ENST00000495172 ACIN1Q9UKV3 1341 aaKnown RBP13.82□□□□□ -0.2
GARNL3-219ENST00000495172 ATP7BP35670 1465 aa13.81□□□□□ -0.2
GARNL3-219ENST00000495172 WWC3Q9ULE0 1092 aa13.81□□□□□ -0.2
GARNL3-219ENST00000495172 TOPAZ1Q8N9V7 1692 aa13.8□□□□□ -0.2
GARNL3-219ENST00000495172 MARCH10Q8NA82 808 aaPredicted RBP13.8□□□□□ -0.2
GARNL3-219ENST00000495172 ABCC11Q96J66 1382 aa13.8□□□□□ -0.2
GARNL3-219ENST00000495172 PAPPAQ13219 1627 aa13.79□□□□□ -0.2
GARNL3-219ENST00000495172 GRIN3BO60391 1043 aa13.78□□□□□ -0.2
GARNL3-219ENST00000495172 KLRG1Q96E93 195 aa13.78□□□□□ -0.2
GARNL3-219ENST00000495172 PCDH10Q9P2E7 1040 aa13.78□□□□□ -0.2
GARNL3-219ENST00000495172 PRR36Q9H6K5 1346 aa13.78□□□□□ -0.2
GARNL3-219ENST00000495172 LMO7Q8WWI1 1683 aa13.78□□□□□ -0.2
GARNL3-219ENST00000495172 GPRASP1Q5JY77 1395 aa13.77□□□□□ -0.21
GARNL3-219ENST00000495172 HIRIP3Q9BW71 556 aaPredicted RBP13.77□□□□□ -0.21
GARNL3-219ENST00000495172 YTHDC2Q9H6S0 1430 aaKnown RBP13.77□□□□□ -0.21
GARNL3-219ENST00000495172 JMYQ8N9B5 988 aa13.76□□□□□ -0.21
GARNL3-219ENST00000495172 DDB1Q16531 1140 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms