RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 HS1BP3Q53T59 392 aa12.11□□□□□ -0.47
SYNE1-230ENST00000495090 BMP2KLQ5H9B9 411 aa12.11□□□□□ -0.47
SYNE1-230ENST00000495090 CFAP70Q5T0N1 1121 aa12.11□□□□□ -0.47
SYNE1-230ENST00000495090 ATF7IPQ6VMQ6 1270 aa12.11□□□□□ -0.47
SYNE1-230ENST00000495090 ZSCAN30Q86W11 494 aa12.11□□□□□ -0.47
SYNE1-230ENST00000495090 NOS1P29475 1434 aa12.11□□□□□ -0.47
SYNE1-230ENST00000495090 HSP90AB1P08238 724 aaKnown RBP12.1□□□□□ -0.47
SYNE1-230ENST00000495090 ZBTB40Q9NUA8 1239 aa12.1□□□□□ -0.47
SYNE1-230ENST00000495090 GOLGA6L22H0YM25 854 aa12.09□□□□□ -0.47
SYNE1-230ENST00000495090 OFD1O75665 1012 aa12.09□□□□□ -0.47
SYNE1-230ENST00000495090 SPAG9O60271 1321 aaKnown RBP12.09□□□□□ -0.47
SYNE1-230ENST00000495090 QRICH2Q9H0J4 1663 aa12.09□□□□□ -0.47
SYNE1-230ENST00000495090 MTHFSP49914 203 aa12.09□□□□□ -0.47
SYNE1-230ENST00000495090 KLHL40Q2TBA0 621 aa12.09□□□□□ -0.47
SYNE1-230ENST00000495090 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.09□□□□□ -0.47
SYNE1-230ENST00000495090 ANP32BQ92688 251 aaKnown RBP12.09□□□□□ -0.47
SYNE1-230ENST00000495090 SMC4Q9NTJ3 1288 aa12.09□□□□□ -0.47
SYNE1-230ENST00000495090 FANCAO15360 1455 aa12.09□□□□□ -0.47
SYNE1-230ENST00000495090 ADGRF5Q8IZF2 1346 aa12.08□□□□□ -0.47
SYNE1-230ENST00000495090 K7ELQ4 463 aaPredicted RBP12.08□□□□□ -0.48
SYNE1-230ENST00000495090 KIF2CQ99661 725 aa12.08□□□□□ -0.48
SYNE1-230ENST00000495090 MED14O60244 1454 aa12.07□□□□□ -0.48
SYNE1-230ENST00000495090 NASPP49321 788 aaPredicted RBP12.07□□□□□ -0.48
SYNE1-230ENST00000495090 KIAA1211Q6ZU35 1233 aa12.07□□□□□ -0.48
SYNE1-230ENST00000495090 ITPRIPQ8IWB1 547 aa12.07□□□□□ -0.48
SYNE1-230ENST00000495090 MAP7D2Q96T17 732 aa12.07□□□□□ -0.48
SYNE1-230ENST00000495090 IPO8O15397 1037 aaKnown RBP12.07□□□□□ -0.48
SYNE1-230ENST00000495090 MROH1Q8NDA8 1641 aa12.07□□□□□ -0.48
SYNE1-230ENST00000495090 ADGRB3O60242 1522 aa12.07□□□□□ -0.48
SYNE1-230ENST00000495090 EFCAB6Q5THR3 1501 aa12.07□□□□□ -0.48
SYNE1-230ENST00000495090 BRPF1P55201 1214 aaPredicted RBP12.06□□□□□ -0.48
SYNE1-230ENST00000495090 ZNF445P59923 1031 aa12.06□□□□□ -0.48
SYNE1-230ENST00000495090 CHD1LQ86WJ1 897 aa12.06□□□□□ -0.48
SYNE1-230ENST00000495090 SSH1Q8WYL5 1049 aa12.06□□□□□ -0.48
SYNE1-230ENST00000495090 CHMP4BQ9H444 224 aaKnown RBP12.06□□□□□ -0.48
SYNE1-230ENST00000495090 MROH2AA6NES4 1674 aa12.06□□□□□ -0.48
SYNE1-230ENST00000495090 ADGRB1O14514 1584 aa12.06□□□□□ -0.48
SYNE1-230ENST00000495090 ANKRD36BQ8N2N9 1353 aa12.06□□□□□ -0.48
SYNE1-230ENST00000495090 ALDH1L2Q3SY69 923 aa12.05□□□□□ -0.48
SYNE1-230ENST00000495090 ATP7AQ04656 1500 aa12.05□□□□□ -0.48
SYNE1-230ENST00000495090 LMTK2Q8IWU2 1503 aa12.05□□□□□ -0.48
SYNE1-230ENST00000495090 MSNP26038 577 aaKnown RBP12.05□□□□□ -0.48
SYNE1-230ENST00000495090 CALD1Q05682 793 aaKnown RBP12.05□□□□□ -0.48
SYNE1-230ENST00000495090 EXOSC9Q06265 439 aaKnown RBP12.05□□□□□ -0.48
SYNE1-230ENST00000495090 CD109Q6YHK3 1445 aa12.05□□□□□ -0.48
SYNE1-230ENST00000495090 ZNF428Q96B54 188 aa12.05□□□□□ -0.48
SYNE1-230ENST00000495090 GCC1Q96CN9 775 aa12.05□□□□□ -0.48
SYNE1-230ENST00000495090 CFAP44Q96MT7 982 aa12.05□□□□□ -0.48
SYNE1-230ENST00000495090 U2AF1L5P0DN76 240 aaPredicted RBP12.04□□□□□ -0.48
SYNE1-230ENST00000495090 U2AF1Q01081 240 aaKnown RBP eCLIP12.04□□□□□ -0.48
SYNE1-230ENST00000495090 TMEM57Q8N5G2 664 aa12.04□□□□□ -0.48
SYNE1-230ENST00000495090 PLEKHF1Q96S99 279 aa12.04□□□□□ -0.48
SYNE1-230ENST00000495090 UHRF1BP1LA0JNW5 1464 aa12.04□□□□□ -0.48
SYNE1-230ENST00000495090 PPRC1Q5VV67 1664 aaKnown RBP12.04□□□□□ -0.48
SYNE1-230ENST00000495090 ZNF500O60304 480 aaPredicted RBP12.03□□□□□ -0.48
SYNE1-230ENST00000495090 SLC12A5Q9H2X9 1139 aa12.03□□□□□ -0.48
SYNE1-230ENST00000495090 NOB1Q9ULX3 412 aaKnown RBP12.03□□□□□ -0.48
SYNE1-230ENST00000495090 COL3A1P02461 1466 aaPredicted RBP12.03□□□□□ -0.48
SYNE1-230ENST00000495090 UGGT1Q9NYU2 1555 aa12.03□□□□□ -0.48
SYNE1-230ENST00000495090 ZCCHC11Q5TAX3 1644 aaKnown RBP12.03□□□□□ -0.48
SYNE1-230ENST00000495090 TMPOP42166 694 aaKnown RBP12.03□□□□□ -0.48
SYNE1-230ENST00000495090 TSR2Q969E8 191 aaKnown RBP12.03□□□□□ -0.48
SYNE1-230ENST00000495090 BAG4O95429 457 aaKnown RBP12.02□□□□□ -0.49
SYNE1-230ENST00000495090 TNNT2P45379 298 aaPredicted RBP12.02□□□□□ -0.49
SYNE1-230ENST00000495090 PDLIM2Q96JY6 352 aa12.02□□□□□ -0.49
SYNE1-230ENST00000495090 NOL7Q9UMY1 257 aaKnown RBP12.02□□□□□ -0.49
SYNE1-230ENST00000495090 TRIM35Q9UPQ4 493 aa12.02□□□□□ -0.49
SYNE1-230ENST00000495090 PIK3R4Q99570 1358 aa12.02□□□□□ -0.49
SYNE1-230ENST00000495090 PPIP5K1Q6PFW1 1433 aa12.02□□□□□ -0.49
SYNE1-230ENST00000495090 PPLO60437 1756 aa12.02□□□□□ -0.49
SYNE1-230ENST00000495090 MCM5P33992 734 aa12.01□□□□□ -0.49
SYNE1-230ENST00000495090 NUCB2P80303 420 aa12.01□□□□□ -0.49
SYNE1-230ENST00000495090 MTERF4Q7Z6M4 381 aaKnown RBP12.01□□□□□ -0.49
SYNE1-230ENST00000495090 LNPKQ9C0E8 428 aa12.01□□□□□ -0.49
SYNE1-230ENST00000495090 C14orf93Q9H972 538 aaKnown RBP12.01□□□□□ -0.49
SYNE1-230ENST00000495090 DDX49Q9Y6V7 483 aaKnown RBP12.01□□□□□ -0.49
SYNE1-230ENST00000495090 CD2BP2O95400 341 aaKnown RBP12.01□□□□□ -0.49
SYNE1-230ENST00000495090 SSFA2P28290 1259 aa12.01□□□□□ -0.49
SYNE1-230ENST00000495090 TBC1D9Q6ZT07 1266 aa12□□□□□ -0.49
SYNE1-230ENST00000495090 CYP2E1P05181 493 aaPredicted RBP11.99□□□□□ -0.49
SYNE1-230ENST00000495090 RIPK4P57078 832 aa11.99□□□□□ -0.49
SYNE1-230ENST00000495090 RABEP1Q15276 862 aa11.99□□□□□ -0.49
SYNE1-230ENST00000495090 GAS2L2Q8NHY3 880 aa11.99□□□□□ -0.49
SYNE1-230ENST00000495090 ARHGAP45Q92619 1136 aa11.99□□□□□ -0.49
SYNE1-230ENST00000495090 PTCH1Q13635 1447 aa11.99□□□□□ -0.49
SYNE1-230ENST00000495090 ANKRD26Q9UPS8 1709 aa11.99□□□□□ -0.49
SYNE1-230ENST00000495090 ABCA9Q8IUA7 1624 aa11.99□□□□□ -0.49
SYNE1-230ENST00000495090 TULP4Q9NRJ4 1543 aa11.99□□□□□ -0.49
SYNE1-230ENST00000495090 YEATS2Q9ULM3 1422 aa11.99□□□□□ -0.49
SYNE1-230ENST00000495090 CSPP1Q1MSJ5 1256 aa11.99□□□□□ -0.49
SYNE1-230ENST00000495090 CDC42BPGQ6DT37 1551 aa11.98□□□□□ -0.49
SYNE1-230ENST00000495090 RPGRIP1LQ68CZ1 1315 aa11.98□□□□□ -0.49
SYNE1-230ENST00000495090 EVC2Q86UK5 1308 aa11.98□□□□□ -0.49
SYNE1-230ENST00000495090 CDC45O75419 566 aa11.98□□□□□ -0.49
SYNE1-230ENST00000495090 CWC22Q9HCG8 908 aaKnown RBP11.98□□□□□ -0.49
SYNE1-230ENST00000495090 ZSCAN23Q3MJ62 389 aa11.98□□□□□ -0.49
SYNE1-230ENST00000495090 AFAP1Q8N556 730 aa11.98□□□□□ -0.49
SYNE1-230ENST00000495090 ARHGEF28Q8N1W1 1705 aaKnown RBP11.97□□□□□ -0.49
SYNE1-230ENST00000495090 ZBTB7BO15156 539 aaPredicted RBP11.97□□□□□ -0.49
SYNE1-230ENST00000495090 TRAK1Q9UPV9 953 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms