RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 PAK3O75914 559 aaPredicted RBP18.49■□□□□ 0.55
SKA1-205ENST00000494518 DEFB132Q7Z7B7 95 aa18.49■□□□□ 0.55
SKA1-205ENST00000494518 CCDC125Q86Z20 511 aa18.49■□□□□ 0.55
SKA1-205ENST00000494518 NGDNQ8NEJ9 315 aaKnown RBP18.49■□□□□ 0.55
SKA1-205ENST00000494518 EIF3AQ14152 1382 aaKnown RBP18.49■□□□□ 0.55
SKA1-205ENST00000494518 BLMP54132 1417 aaPredicted RBP18.49■□□□□ 0.55
SKA1-205ENST00000494518 BTG4Q9NY30 223 aa18.48■□□□□ 0.55
SKA1-205ENST00000494518 ATP7BP35670 1465 aa18.46■□□□□ 0.55
SKA1-205ENST00000494518 FAM98CQ17RN3 349 aaKnown RBP18.46■□□□□ 0.55
SKA1-205ENST00000494518 PPP4R3CPQ6ZMV5 832 aa18.45■□□□□ 0.54
SKA1-205ENST00000494518 KRT27Q7Z3Y8 459 aa18.45■□□□□ 0.54
SKA1-205ENST00000494518 PHRF1Q9P1Y6 1649 aaKnown RBP18.45■□□□□ 0.54
SKA1-205ENST00000494518 MAPK8IP2Q13387 824 aaPredicted RBP18.44■□□□□ 0.54
SKA1-205ENST00000494518 NUDT16Q96DE0 195 aaKnown RBP18.44■□□□□ 0.54
SKA1-205ENST00000494518 TOPAZ1Q8N9V7 1692 aa18.44■□□□□ 0.54
SKA1-205ENST00000494518 SF3B2Q13435 895 aaKnown RBP18.43■□□□□ 0.54
SKA1-205ENST00000494518 ONECUT3O60422 494 aaPredicted RBP18.42■□□□□ 0.54
SKA1-205ENST00000494518 NUTM2GQ5VZR2 741 aa18.42■□□□□ 0.54
SKA1-205ENST00000494518 KIAA1210Q9ULL0 1709 aa18.42■□□□□ 0.54
SKA1-205ENST00000494518 HRCP23327 699 aa18.41■□□□□ 0.54
SKA1-205ENST00000494518 FAM182BQ5T319 152 aa18.41■□□□□ 0.54
SKA1-205ENST00000494518 STAC3Q96MF2 364 aa18.41■□□□□ 0.54
SKA1-205ENST00000494518 CDK19Q9BWU1 502 aa18.41■□□□□ 0.54
SKA1-205ENST00000494518 PRDM11Q9NQV5 511 aa18.41■□□□□ 0.54
SKA1-205ENST00000494518 CHRNA2Q15822 529 aa18.4■□□□□ 0.54
SKA1-205ENST00000494518 KIAA0232Q92628 1395 aa18.39■□□□□ 0.53
SKA1-205ENST00000494518 THSD7AQ9UPZ6 1657 aa18.38■□□□□ 0.53
SKA1-205ENST00000494518 NBPF1Q3BBV0 1214 aa18.38■□□□□ 0.53
SKA1-205ENST00000494518 SPATA31A5Q5VU36 1347 aa18.38■□□□□ 0.53
SKA1-205ENST00000494518 SPATA31A7Q8IWB4 1347 aa18.38■□□□□ 0.53
SKA1-205ENST00000494518 RGPD1P0DJD0 1748 aa18.37■□□□□ 0.53
SKA1-205ENST00000494518 ZC3H6P61129 1189 aaKnown RBP18.37■□□□□ 0.53
SKA1-205ENST00000494518 ACEP12821 1306 aa18.36■□□□□ 0.53
SKA1-205ENST00000494518 QRICH2Q9H0J4 1663 aa18.36■□□□□ 0.53
SKA1-205ENST00000494518 STRN4Q9NRL3 753 aa18.36■□□□□ 0.53
SKA1-205ENST00000494518 TNS1Q9HBL0 1735 aaKnown RBP18.35■□□□□ 0.53
SKA1-205ENST00000494518 NRKQ7Z2Y5 1582 aa18.34■□□□□ 0.53
SKA1-205ENST00000494518 PSDA5PKW4 1024 aaPredicted RBP18.34■□□□□ 0.53
SKA1-205ENST00000494518 POLR3AO14802 1390 aaPredicted RBP18.33■□□□□ 0.53
SKA1-205ENST00000494518 BAG6P46379 1132 aa18.33■□□□□ 0.52
SKA1-205ENST00000494518 NBPF8Q3BBV2 869 aa18.33■□□□□ 0.52
SKA1-205ENST00000494518 USP35Q9P2H5 1018 aa18.32■□□□□ 0.52
SKA1-205ENST00000494518 CCDC61Q9Y6R9 512 aa18.32■□□□□ 0.52
SKA1-205ENST00000494518 SPATA31A1Q5TZJ5 1347 aa18.31■□□□□ 0.52
SKA1-205ENST00000494518 SRPK2P78362 688 aaKnown RBP18.31■□□□□ 0.52
SKA1-205ENST00000494518 EN1Q05925 392 aaPredicted RBP18.31■□□□□ 0.52
SKA1-205ENST00000494518 CABP2Q9NPB3 220 aa18.31■□□□□ 0.52
SKA1-205ENST00000494518 PPIP5K1Q6PFW1 1433 aa18.31■□□□□ 0.52
SKA1-205ENST00000494518 ABTB2Q8N961 1025 aa18.3■□□□□ 0.52
SKA1-205ENST00000494518 CENPJQ9HC77 1338 aaPredicted RBP18.29■□□□□ 0.52
SKA1-205ENST00000494518 PLEKHG3A1L390 1219 aa18.29■□□□□ 0.52
SKA1-205ENST00000494518 CAMTA1Q9Y6Y1 1673 aa18.28■□□□□ 0.52
SKA1-205ENST00000494518 SSH2Q76I76 1423 aa18.28■□□□□ 0.52
SKA1-205ENST00000494518 LMO7Q8WWI1 1683 aa18.28■□□□□ 0.52
SKA1-205ENST00000494518 LRP5O75197 1615 aa18.27■□□□□ 0.52
SKA1-205ENST00000494518 ZBTB7CA1YPR0 619 aa18.27■□□□□ 0.52
SKA1-205ENST00000494518 EVA1CP58658 441 aa18.27■□□□□ 0.52
SKA1-205ENST00000494518 LARP1Q6PKG0 1096 aaKnown RBP18.26■□□□□ 0.51
SKA1-205ENST00000494518 TRPM1Q7Z4N2 1603 aa18.25■□□□□ 0.51
SKA1-205ENST00000494518 TRIM37O94972 964 aa18.25■□□□□ 0.51
SKA1-205ENST00000494518 USP19O94966 1318 aa18.24■□□□□ 0.51
SKA1-205ENST00000494518 EZH2Q15910 746 aaKnown RBP18.24■□□□□ 0.51
SKA1-205ENST00000494518 L3MBTL2Q969R5 705 aa18.24■□□□□ 0.51
SKA1-205ENST00000494518 SIN3AQ96ST3 1273 aa18.23■□□□□ 0.51
SKA1-205ENST00000494518 R3HDM1Q15032 1099 aaKnown RBP18.22■□□□□ 0.51
SKA1-205ENST00000494518 CABP1Q9NZU7 370 aa18.22■□□□□ 0.51
SKA1-205ENST00000494518 PIK3C2AO00443 1686 aa18.22■□□□□ 0.51
SKA1-205ENST00000494518 CPDO75976 1380 aa18.21■□□□□ 0.51
SKA1-205ENST00000494518 GCP02774 474 aa18.21■□□□□ 0.51
SKA1-205ENST00000494518 NLRP13Q86W25 1043 aa18.21■□□□□ 0.51
SKA1-205ENST00000494518 DISP2A7MBM2 1401 aa18.21■□□□□ 0.51
SKA1-205ENST00000494518 PDE3BQ13370 1112 aa18.2■□□□□ 0.5
SKA1-205ENST00000494518 NEUROD1Q13562 356 aa18.2■□□□□ 0.5
SKA1-205ENST00000494518 FAM196AQ6ZSG2 479 aa18.2■□□□□ 0.5
SKA1-205ENST00000494518 USP6P35125 1406 aa18.2■□□□□ 0.5
SKA1-205ENST00000494518 COL5A2P05997 1499 aaPredicted RBP18.2■□□□□ 0.5
SKA1-205ENST00000494518 RGPD5Q99666 1765 aa18.19■□□□□ 0.5
SKA1-205ENST00000494518 APBA3O96018 575 aa18.19■□□□□ 0.5
SKA1-205ENST00000494518 BARGINQ6ZT62 677 aa18.19■□□□□ 0.5
SKA1-205ENST00000494518 TCP11L2Q8N4U5 519 aa18.19■□□□□ 0.5
SKA1-205ENST00000494518 PARP4Q9UKK3 1724 aaKnown RBP18.19■□□□□ 0.5
SKA1-205ENST00000494518 AKAP12Q02952 1782 aa18.19■□□□□ 0.5
SKA1-205ENST00000494518 RREB1Q92766 1687 aa18.18■□□□□ 0.5
SKA1-205ENST00000494518 NUP188Q5SRE5 1749 aa18.18■□□□□ 0.5
SKA1-205ENST00000494518 NLRP6P59044 892 aa18.18■□□□□ 0.5
SKA1-205ENST00000494518 SLIT3O75094 1523 aa18.18■□□□□ 0.5
SKA1-205ENST00000494518 CAMKK2Q96RR4 588 aa18.17■□□□□ 0.5
SKA1-205ENST00000494518 WNK3Q9BYP7 1800 aa18.16■□□□□ 0.5
SKA1-205ENST00000494518 COL18A1P39060 1754 aa18.16■□□□□ 0.5
SKA1-205ENST00000494518 ROCK2O75116 1388 aaKnown RBP18.16■□□□□ 0.5
SKA1-205ENST00000494518 SOX12O15370 315 aa18.15■□□□□ 0.5
SKA1-205ENST00000494518 EVC2Q86UK5 1308 aa18.15■□□□□ 0.5
SKA1-205ENST00000494518 LRRC37A3O60309 1634 aa18.15■□□□□ 0.5
SKA1-205ENST00000494518 SBF2Q86WG5 1849 aa18.14■□□□□ 0.5
SKA1-205ENST00000494518 CRB1P82279 1406 aa18.14■□□□□ 0.49
SKA1-205ENST00000494518 CACNB1Q02641 598 aaPredicted RBP18.13■□□□□ 0.49
SKA1-205ENST00000494518 BRD4O60885 1362 aaPredicted RBP18.13■□□□□ 0.49
SKA1-205ENST00000494518 THRAP3Q9Y2W1 955 aaKnown RBP18.12■□□□□ 0.49
SKA1-205ENST00000494518 PEAK1Q9H792 1746 aa18.12■□□□□ 0.49
SKA1-205ENST00000494518 TOM1L2Q6ZVM7 507 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms