RNA–Protein interactions for RNA: ENST00000494503.1

UBR4-216, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 3

Gene UBR4, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-216ENST00000494503 ALS2Q96Q42 1657 aa14.06□□□□□ -0.16
UBR4-216ENST00000494503 NRAPQ86VF7 1730 aa14.06□□□□□ -0.16
UBR4-216ENST00000494503 COL14A1Q05707 1796 aaKnown RBP14.06□□□□□ -0.16
UBR4-216ENST00000494503 PRDM11Q9NQV5 511 aa14.05□□□□□ -0.16
UBR4-216ENST00000494503 PRR36Q9H6K5 1346 aa14.05□□□□□ -0.16
UBR4-216ENST00000494503 ARHGEF28Q8N1W1 1705 aaKnown RBP14.04□□□□□ -0.16
UBR4-216ENST00000494503 BAG6P46379 1132 aa14.03□□□□□ -0.16
UBR4-216ENST00000494503 FAM182BQ5T319 152 aa14.03□□□□□ -0.16
UBR4-216ENST00000494503 NUTM2GQ5VZR2 741 aa14.03□□□□□ -0.16
UBR4-216ENST00000494503 PSDA5PKW4 1024 aaPredicted RBP14.02□□□□□ -0.17
UBR4-216ENST00000494503 STRN4Q9NRL3 753 aa14.02□□□□□ -0.17
UBR4-216ENST00000494503 CHRNA2Q15822 529 aa14.01□□□□□ -0.17
UBR4-216ENST00000494503 NUDT16Q96DE0 195 aaKnown RBP14.01□□□□□ -0.17
UBR4-216ENST00000494503 USP35Q9P2H5 1018 aa14□□□□□ -0.17
UBR4-216ENST00000494503 RGPD1P0DJD0 1748 aa14□□□□□ -0.17
UBR4-216ENST00000494503 KIAA0232Q92628 1395 aa13.99□□□□□ -0.17
UBR4-216ENST00000494503 CRYBG1Q9Y4K1 1723 aa13.99□□□□□ -0.17
UBR4-216ENST00000494503 ONECUT3O60422 494 aaPredicted RBP13.99□□□□□ -0.17
UBR4-216ENST00000494503 ZC3H6P61129 1189 aaKnown RBP13.99□□□□□ -0.17
UBR4-216ENST00000494503 CDK19Q9BWU1 502 aa13.99□□□□□ -0.17
UBR4-216ENST00000494503 PHRF1Q9P1Y6 1649 aaKnown RBP13.99□□□□□ -0.17
UBR4-216ENST00000494503 ATP7BP35670 1465 aa13.99□□□□□ -0.17
UBR4-216ENST00000494503 SPATA31A5Q5VU36 1347 aa13.98□□□□□ -0.17
UBR4-216ENST00000494503 SPATA31A7Q8IWB4 1347 aa13.98□□□□□ -0.17
UBR4-216ENST00000494503 EVA1CP58658 441 aa13.98□□□□□ -0.17
UBR4-216ENST00000494503 EN1Q05925 392 aaPredicted RBP13.98□□□□□ -0.17
UBR4-216ENST00000494503 STAC3Q96MF2 364 aa13.98□□□□□ -0.17
UBR4-216ENST00000494503 ZBTB7CA1YPR0 619 aa13.97□□□□□ -0.17
UBR4-216ENST00000494503 SRPK2P78362 688 aaKnown RBP13.96□□□□□ -0.17
UBR4-216ENST00000494503 ACEP12821 1306 aa13.95□□□□□ -0.18
UBR4-216ENST00000494503 ABTB2Q8N961 1025 aa13.95□□□□□ -0.18
UBR4-216ENST00000494503 TOPAZ1Q8N9V7 1692 aa13.95□□□□□ -0.18
UBR4-216ENST00000494503 THSD7AQ9UPZ6 1657 aa13.95□□□□□ -0.18
UBR4-216ENST00000494503 SPATA31A1Q5TZJ5 1347 aa13.93□□□□□ -0.18
UBR4-216ENST00000494503 TRIM37O94972 964 aa13.93□□□□□ -0.18
UBR4-216ENST00000494503 PDE3BQ13370 1112 aa13.93□□□□□ -0.18
UBR4-216ENST00000494503 R3HDM1Q15032 1099 aaKnown RBP13.93□□□□□ -0.18
UBR4-216ENST00000494503 CCDC61Q9Y6R9 512 aa13.93□□□□□ -0.18
UBR4-216ENST00000494503 LRP5O75197 1615 aa13.93□□□□□ -0.18
UBR4-216ENST00000494503 TNS1Q9HBL0 1735 aaKnown RBP13.93□□□□□ -0.18
UBR4-216ENST00000494503 KIAA1210Q9ULL0 1709 aa13.93□□□□□ -0.18
UBR4-216ENST00000494503 NBPF8Q3BBV2 869 aa13.92□□□□□ -0.18
UBR4-216ENST00000494503 HRCP23327 699 aa13.91□□□□□ -0.18
UBR4-216ENST00000494503 EZH2Q15910 746 aaKnown RBP13.91□□□□□ -0.18
UBR4-216ENST00000494503 NBPF1Q3BBV0 1214 aa13.91□□□□□ -0.18
UBR4-216ENST00000494503 CABP2Q9NPB3 220 aa13.91□□□□□ -0.18
UBR4-216ENST00000494503 NRKQ7Z2Y5 1582 aa13.91□□□□□ -0.18
UBR4-216ENST00000494503 QRICH2Q9H0J4 1663 aa13.91□□□□□ -0.18
UBR4-216ENST00000494503 PPIP5K1Q6PFW1 1433 aa13.9□□□□□ -0.18
UBR4-216ENST00000494503 APBA3O96018 575 aa13.9□□□□□ -0.18
UBR4-216ENST00000494503 FAM196AQ6ZSG2 479 aa13.9□□□□□ -0.18
UBR4-216ENST00000494503 POLR3AO14802 1390 aaPredicted RBP13.9□□□□□ -0.18
UBR4-216ENST00000494503 SSH2Q76I76 1423 aa13.9□□□□□ -0.19
UBR4-216ENST00000494503 CENPJQ9HC77 1338 aaPredicted RBP13.9□□□□□ -0.19
UBR4-216ENST00000494503 LARP1Q6PKG0 1096 aaKnown RBP13.89□□□□□ -0.19
UBR4-216ENST00000494503 NLRP13Q86W25 1043 aa13.88□□□□□ -0.19
UBR4-216ENST00000494503 PLEKHG3A1L390 1219 aa13.87□□□□□ -0.19
UBR4-216ENST00000494503 TCP11L2Q8N4U5 519 aa13.87□□□□□ -0.19
UBR4-216ENST00000494503 CAMTA1Q9Y6Y1 1673 aa13.86□□□□□ -0.19
UBR4-216ENST00000494503 SOX12O15370 315 aa13.85□□□□□ -0.19
UBR4-216ENST00000494503 GCP02774 474 aa13.85□□□□□ -0.19
UBR4-216ENST00000494503 NLRP6P59044 892 aa13.85□□□□□ -0.19
UBR4-216ENST00000494503 DISP2A7MBM2 1401 aa13.84□□□□□ -0.19
UBR4-216ENST00000494503 BARGINQ6ZT62 677 aa13.84□□□□□ -0.19
UBR4-216ENST00000494503 CABP1Q9NZU7 370 aa13.84□□□□□ -0.19
UBR4-216ENST00000494503 LMO7Q8WWI1 1683 aa13.84□□□□□ -0.19
UBR4-216ENST00000494503 USP19O94966 1318 aa13.84□□□□□ -0.19
UBR4-216ENST00000494503 CPDO75976 1380 aa13.83□□□□□ -0.19
UBR4-216ENST00000494503 NEUROD1Q13562 356 aa13.83□□□□□ -0.2
UBR4-216ENST00000494503 NBPF14Q5TI25 921 aa13.83□□□□□ -0.2
UBR4-216ENST00000494503 TOM1L2Q6ZVM7 507 aa13.83□□□□□ -0.2
UBR4-216ENST00000494503 CAMKK2Q96RR4 588 aa13.83□□□□□ -0.2
UBR4-216ENST00000494503 COL5A2P05997 1499 aaPredicted RBP13.82□□□□□ -0.2
UBR4-216ENST00000494503 USP6P35125 1406 aa13.81□□□□□ -0.2
UBR4-216ENST00000494503 NUP188Q5SRE5 1749 aa13.81□□□□□ -0.2
UBR4-216ENST00000494503 CSB-PGBD3P0DP91 1061 aa13.81□□□□□ -0.2
UBR4-216ENST00000494503 THRAP3Q9Y2W1 955 aaKnown RBP13.81□□□□□ -0.2
UBR4-216ENST00000494503 EVC2Q86UK5 1308 aa13.81□□□□□ -0.2
UBR4-216ENST00000494503 RREB1Q92766 1687 aa13.81□□□□□ -0.2
UBR4-216ENST00000494503 PARD3Q8TEW0 1356 aa13.81□□□□□ -0.2
UBR4-216ENST00000494503 PARP4Q9UKK3 1724 aaKnown RBP13.81□□□□□ -0.2
UBR4-216ENST00000494503 CRB1P82279 1406 aa13.81□□□□□ -0.2
UBR4-216ENST00000494503 L3MBTL2Q969R5 705 aa13.8□□□□□ -0.2
UBR4-216ENST00000494503 PPP1R1BQ9UD71 204 aaPredicted RBP13.8□□□□□ -0.2
UBR4-216ENST00000494503 ROCK2O75116 1388 aaKnown RBP13.8□□□□□ -0.2
UBR4-216ENST00000494503 PIK3C2AO00443 1686 aa13.79□□□□□ -0.2
UBR4-216ENST00000494503 TRPM1Q7Z4N2 1603 aa13.79□□□□□ -0.2
UBR4-216ENST00000494503 DDB1Q16531 1140 aa13.78□□□□□ -0.2
UBR4-216ENST00000494503 SIN3AQ96ST3 1273 aa13.78□□□□□ -0.2
UBR4-216ENST00000494503 BRD4O60885 1362 aaPredicted RBP13.78□□□□□ -0.2
UBR4-216ENST00000494503 OVOS2A0A0G2JMS6 1433 aa13.78□□□□□ -0.2
UBR4-216ENST00000494503 OVOS2A0A0J9YW53 1432 aa13.78□□□□□ -0.2
UBR4-216ENST00000494503 OVOS2Q6IE36 1432 aa13.78□□□□□ -0.2
UBR4-216ENST00000494503 LRRC37A3O60309 1634 aa13.78□□□□□ -0.2
UBR4-216ENST00000494503 AKAP12Q02952 1782 aa13.78□□□□□ -0.2
UBR4-216ENST00000494503 RGPD5Q99666 1765 aa13.78□□□□□ -0.2
UBR4-216ENST00000494503 WNK3Q9BYP7 1800 aa13.76□□□□□ -0.21
UBR4-216ENST00000494503 SLIT3O75094 1523 aa13.76□□□□□ -0.21
UBR4-216ENST00000494503 AATKQ6ZMQ8 1374 aa13.76□□□□□ -0.21
UBR4-216ENST00000494503 KAT6BQ8WYB5 2073 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms