RNA–Protein interactions for RNA: ENST00000493682.6

COL9A1-210, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 5

Gene COL9A1, Length 1,117 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-210ENST00000493682 PAK3O75914 559 aaPredicted RBP25.39■■□□□ 1.66
COL9A1-210ENST00000493682 SF3B2Q13435 895 aaKnown RBP25.39■■□□□ 1.66
COL9A1-210ENST00000493682 ARHGEF28Q8N1W1 1705 aaKnown RBP25.39■■□□□ 1.65
COL9A1-210ENST00000493682 COL14A1Q05707 1796 aaKnown RBP25.39■■□□□ 1.65
COL9A1-210ENST00000493682 FAM98CQ17RN3 349 aaKnown RBP25.38■■□□□ 1.65
COL9A1-210ENST00000493682 A0A0G2JS52 829 aa25.37■■□□□ 1.65
COL9A1-210ENST00000493682 MYT1Q01538 1121 aa25.37■■□□□ 1.65
COL9A1-210ENST00000493682 NUDT16Q96DE0 195 aaKnown RBP25.37■■□□□ 1.65
COL9A1-210ENST00000493682 ATP7BP35670 1465 aa25.36■■□□□ 1.65
COL9A1-210ENST00000493682 CRYBG1Q9Y4K1 1723 aa25.34■■□□□ 1.65
COL9A1-210ENST00000493682 ITSN1Q15811 1721 aa25.33■■□□□ 1.65
COL9A1-210ENST00000493682 CDK19Q9BWU1 502 aa25.32■■□□□ 1.64
COL9A1-210ENST00000493682 PRDM11Q9NQV5 511 aa25.32■■□□□ 1.64
COL9A1-210ENST00000493682 SPATA31A5Q5VU36 1347 aa25.32■■□□□ 1.64
COL9A1-210ENST00000493682 SPATA31A7Q8IWB4 1347 aa25.32■■□□□ 1.64
COL9A1-210ENST00000493682 KIAA0232Q92628 1395 aa25.29■■□□□ 1.64
COL9A1-210ENST00000493682 POLR3AO14802 1390 aaPredicted RBP25.27■■□□□ 1.64
COL9A1-210ENST00000493682 KIAA1210Q9ULL0 1709 aa25.26■■□□□ 1.63
COL9A1-210ENST00000493682 BAG6P46379 1132 aa25.26■■□□□ 1.63
COL9A1-210ENST00000493682 CHRNA2Q15822 529 aa25.26■■□□□ 1.63
COL9A1-210ENST00000493682 CCDC61Q9Y6R9 512 aa25.26■■□□□ 1.63
COL9A1-210ENST00000493682 ACEP12821 1306 aa25.26■■□□□ 1.63
COL9A1-210ENST00000493682 NBPF1Q3BBV0 1214 aa25.25■■□□□ 1.63
COL9A1-210ENST00000493682 NBPF8Q3BBV2 869 aa25.25■■□□□ 1.63
COL9A1-210ENST00000493682 FAM182BQ5T319 152 aa25.25■■□□□ 1.63
COL9A1-210ENST00000493682 NUTM2GQ5VZR2 741 aa25.25■■□□□ 1.63
COL9A1-210ENST00000493682 TOPAZ1Q8N9V7 1692 aa25.25■■□□□ 1.63
COL9A1-210ENST00000493682 THSD7AQ9UPZ6 1657 aa25.24■■□□□ 1.63
COL9A1-210ENST00000493682 PHRF1Q9P1Y6 1649 aaKnown RBP25.24■■□□□ 1.63
COL9A1-210ENST00000493682 PLEKHG3A1L390 1219 aa25.24■■□□□ 1.63
COL9A1-210ENST00000493682 SPATA31A1Q5TZJ5 1347 aa25.23■■□□□ 1.63
COL9A1-210ENST00000493682 ZC3H6P61129 1189 aaKnown RBP25.23■■□□□ 1.63
COL9A1-210ENST00000493682 STRN4Q9NRL3 753 aa25.21■■□□□ 1.63
COL9A1-210ENST00000493682 RGPD1P0DJD0 1748 aa25.18■■□□□ 1.62
COL9A1-210ENST00000493682 EN1Q05925 392 aaPredicted RBP25.18■■□□□ 1.62
COL9A1-210ENST00000493682 ABTB2Q8N961 1025 aa25.18■■□□□ 1.62
COL9A1-210ENST00000493682 PSDA5PKW4 1024 aaPredicted RBP25.17■■□□□ 1.62
COL9A1-210ENST00000493682 SRPK2P78362 688 aaKnown RBP25.16■■□□□ 1.62
COL9A1-210ENST00000493682 CENPJQ9HC77 1338 aaPredicted RBP25.15■■□□□ 1.62
COL9A1-210ENST00000493682 NRKQ7Z2Y5 1582 aa25.15■■□□□ 1.62
COL9A1-210ENST00000493682 EVA1CP58658 441 aa25.15■■□□□ 1.62
COL9A1-210ENST00000493682 USP19O94966 1318 aa25.14■■□□□ 1.62
COL9A1-210ENST00000493682 PPIP5K1Q6PFW1 1433 aa25.14■■□□□ 1.62
COL9A1-210ENST00000493682 SSH2Q76I76 1423 aa25.14■■□□□ 1.62
COL9A1-210ENST00000493682 USP35Q9P2H5 1018 aa25.14■■□□□ 1.62
COL9A1-210ENST00000493682 LRP5O75197 1615 aa25.14■■□□□ 1.61
COL9A1-210ENST00000493682 DISP2A7MBM2 1401 aa25.13■■□□□ 1.61
COL9A1-210ENST00000493682 CABP2Q9NPB3 220 aa25.13■■□□□ 1.61
COL9A1-210ENST00000493682 CPDO75976 1380 aa25.13■■□□□ 1.61
COL9A1-210ENST00000493682 CAMTA1Q9Y6Y1 1673 aa25.13■■□□□ 1.61
COL9A1-210ENST00000493682 TNS1Q9HBL0 1735 aaKnown RBP25.12■■□□□ 1.61
COL9A1-210ENST00000493682 FAM196AQ6ZSG2 479 aa25.12■■□□□ 1.61
COL9A1-210ENST00000493682 LARP1Q6PKG0 1096 aaKnown RBP25.11■■□□□ 1.61
COL9A1-210ENST00000493682 BARGINQ6ZT62 677 aa25.11■■□□□ 1.61
COL9A1-210ENST00000493682 NLRP13Q86W25 1043 aa25.1■■□□□ 1.61
COL9A1-210ENST00000493682 LMO7Q8WWI1 1683 aa25.1■■□□□ 1.61
COL9A1-210ENST00000493682 TRIM37O94972 964 aa25.09■■□□□ 1.61
COL9A1-210ENST00000493682 GCP02774 474 aa25.09■■□□□ 1.61
COL9A1-210ENST00000493682 EZH2Q15910 746 aaKnown RBP25.08■■□□□ 1.61
COL9A1-210ENST00000493682 QRICH2Q9H0J4 1663 aa25.07■■□□□ 1.6
COL9A1-210ENST00000493682 TCP11L2Q8N4U5 519 aa25.07■■□□□ 1.6
COL9A1-210ENST00000493682 L3MBTL2Q969R5 705 aa25.07■■□□□ 1.6
COL9A1-210ENST00000493682 BRD4O60885 1362 aaPredicted RBP25.06■■□□□ 1.6
COL9A1-210ENST00000493682 PDE3BQ13370 1112 aa25.06■■□□□ 1.6
COL9A1-210ENST00000493682 R3HDM1Q15032 1099 aaKnown RBP25.06■■□□□ 1.6
COL9A1-210ENST00000493682 CAMKK2Q96RR4 588 aa25.06■■□□□ 1.6
COL9A1-210ENST00000493682 CABP1Q9NZU7 370 aa25.06■■□□□ 1.6
COL9A1-210ENST00000493682 USP6P35125 1406 aa25.03■■□□□ 1.6
COL9A1-210ENST00000493682 APBA3O96018 575 aa25.03■■□□□ 1.6
COL9A1-210ENST00000493682 THRAP3Q9Y2W1 955 aaKnown RBP25.03■■□□□ 1.6
COL9A1-210ENST00000493682 COL5A2P05997 1499 aaPredicted RBP25.02■■□□□ 1.6
COL9A1-210ENST00000493682 NLRP6P59044 892 aa25.01■■□□□ 1.59
COL9A1-210ENST00000493682 PARD3Q8TEW0 1356 aa25■■□□□ 1.59
COL9A1-210ENST00000493682 EVC2Q86UK5 1308 aa24.99■■□□□ 1.59
COL9A1-210ENST00000493682 SIN3AQ96ST3 1273 aa24.99■■□□□ 1.59
COL9A1-210ENST00000493682 SLIT3O75094 1523 aa24.98■■□□□ 1.59
COL9A1-210ENST00000493682 ZBTB7CA1YPR0 619 aa24.98■■□□□ 1.59
COL9A1-210ENST00000493682 TRPM1Q7Z4N2 1603 aa24.97■■□□□ 1.59
COL9A1-210ENST00000493682 CRB1P82279 1406 aa24.97■■□□□ 1.59
COL9A1-210ENST00000493682 AATKQ6ZMQ8 1374 aa24.97■■□□□ 1.59
COL9A1-210ENST00000493682 PARP4Q9UKK3 1724 aaKnown RBP24.95■■□□□ 1.58
COL9A1-210ENST00000493682 PIK3C2AO00443 1686 aa24.94■■□□□ 1.58
COL9A1-210ENST00000493682 ROCK2O75116 1388 aaKnown RBP24.93■■□□□ 1.58
COL9A1-210ENST00000493682 NEUROD1Q13562 356 aa24.93■■□□□ 1.58
COL9A1-210ENST00000493682 RREB1Q92766 1687 aa24.92■■□□□ 1.58
COL9A1-210ENST00000493682 TOM1L2Q6ZVM7 507 aa24.9■■□□□ 1.58
COL9A1-210ENST00000493682 ZNF692Q9BU19 519 aaPredicted RBP24.9■■□□□ 1.58
COL9A1-210ENST00000493682 AXIN2Q9Y2T1 843 aa24.9■■□□□ 1.58
COL9A1-210ENST00000493682 COL18A1P39060 1754 aa24.9■■□□□ 1.58
COL9A1-210ENST00000493682 NUP188Q5SRE5 1749 aa24.89■■□□□ 1.58
COL9A1-210ENST00000493682 TTC21BQ7Z4L5 1316 aa24.89■■□□□ 1.58
COL9A1-210ENST00000493682 C11orf95C9JLR9 678 aaPredicted RBP24.89■■□□□ 1.58
COL9A1-210ENST00000493682 OVOS2A0A0G2JMS6 1433 aa24.87■■□□□ 1.57
COL9A1-210ENST00000493682 OVOS2A0A0J9YW53 1432 aa24.87■■□□□ 1.57
COL9A1-210ENST00000493682 CPSF1Q10570 1443 aaKnown RBP24.87■■□□□ 1.57
COL9A1-210ENST00000493682 OVOS2Q6IE36 1432 aa24.87■■□□□ 1.57
COL9A1-210ENST00000493682 PEAK1Q9H792 1746 aa24.87■■□□□ 1.57
COL9A1-210ENST00000493682 NBPF14Q5TI25 921 aa24.87■■□□□ 1.57
COL9A1-210ENST00000493682 ARHGEF25Q86VW2 580 aa24.87■■□□□ 1.57
COL9A1-210ENST00000493682 WDR17Q8IZU2 1322 aa24.86■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms