RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 CABLES1Q8TDN4 633 aa16.81■□□□□ 0.28
COL6A3-213ENST00000493475 TULP4Q9NRJ4 1543 aa16.8■□□□□ 0.28
COL6A3-213ENST00000493475 BLMP54132 1417 aaPredicted RBP16.79■□□□□ 0.28
COL6A3-213ENST00000493475 PAK3O75914 559 aaPredicted RBP16.79■□□□□ 0.28
COL6A3-213ENST00000493475 POTEHQ6S545 545 aa16.79■□□□□ 0.28
COL6A3-213ENST00000493475 SEPT12Q8IYM1 358 aa16.79■□□□□ 0.28
COL6A3-213ENST00000493475 NWD2Q9ULI1 1742 aa16.78■□□□□ 0.28
COL6A3-213ENST00000493475 RGPD8O14715 1765 aaPredicted RBP16.77■□□□□ 0.27
COL6A3-213ENST00000493475 KRT27Q7Z3Y8 459 aa16.76■□□□□ 0.27
COL6A3-213ENST00000493475 CAPN15O75808 1086 aa16.75■□□□□ 0.27
COL6A3-213ENST00000493475 BTG4Q9NY30 223 aa16.75■□□□□ 0.27
COL6A3-213ENST00000493475 EP400Q96L91 3159 aa16.75■□□□□ 0.27
COL6A3-213ENST00000493475 GLI3P10071 1580 aa16.75■□□□□ 0.27
COL6A3-213ENST00000493475 FAM83GA6ND36 823 aa16.74■□□□□ 0.27
COL6A3-213ENST00000493475 ONECUT3O60422 494 aaPredicted RBP16.74■□□□□ 0.27
COL6A3-213ENST00000493475 PRDM11Q9NQV5 511 aa16.74■□□□□ 0.27
COL6A3-213ENST00000493475 PLCH1Q4KWH8 1693 aa16.74■□□□□ 0.27
COL6A3-213ENST00000493475 NUDT16Q96DE0 195 aaKnown RBP16.73■□□□□ 0.27
COL6A3-213ENST00000493475 ITSN1Q15811 1721 aa16.73■□□□□ 0.27
COL6A3-213ENST00000493475 ATP7BP35670 1465 aa16.72■□□□□ 0.27
COL6A3-213ENST00000493475 PRR36Q9H6K5 1346 aa16.71■□□□□ 0.27
COL6A3-213ENST00000493475 ABCA3Q99758 1704 aa16.71■□□□□ 0.27
COL6A3-213ENST00000493475 BAG6P46379 1132 aa16.71■□□□□ 0.27
COL6A3-213ENST00000493475 CCDC61Q9Y6R9 512 aa16.71■□□□□ 0.27
COL6A3-213ENST00000493475 COL14A1Q05707 1796 aaKnown RBP16.71■□□□□ 0.27
COL6A3-213ENST00000493475 FAM98CQ17RN3 349 aaKnown RBP16.7■□□□□ 0.26
COL6A3-213ENST00000493475 CDK19Q9BWU1 502 aa16.7■□□□□ 0.26
COL6A3-213ENST00000493475 TRPM3Q9HCF6 1732 aaPredicted RBP16.69■□□□□ 0.26
COL6A3-213ENST00000493475 ALS2Q96Q42 1657 aa16.68■□□□□ 0.26
COL6A3-213ENST00000493475 ARHGEF28Q8N1W1 1705 aaKnown RBP16.67■□□□□ 0.26
COL6A3-213ENST00000493475 SRPK2P78362 688 aaKnown RBP16.67■□□□□ 0.26
COL6A3-213ENST00000493475 KIAA1210Q9ULL0 1709 aa16.67■□□□□ 0.26
COL6A3-213ENST00000493475 SRCAPQ6ZRS2 3230 aa16.66■□□□□ 0.26
COL6A3-213ENST00000493475 EVA1CP58658 441 aa16.66■□□□□ 0.26
COL6A3-213ENST00000493475 SPATA31A5Q5VU36 1347 aa16.66■□□□□ 0.26
COL6A3-213ENST00000493475 SPATA31A7Q8IWB4 1347 aa16.66■□□□□ 0.26
COL6A3-213ENST00000493475 ABTB2Q8N961 1025 aa16.65■□□□□ 0.26
COL6A3-213ENST00000493475 ACEP12821 1306 aa16.65■□□□□ 0.26
COL6A3-213ENST00000493475 CENPJQ9HC77 1338 aaPredicted RBP16.65■□□□□ 0.26
COL6A3-213ENST00000493475 POLR3AO14802 1390 aaPredicted RBP16.64■□□□□ 0.26
COL6A3-213ENST00000493475 BRD4O60885 1362 aaPredicted RBP16.64■□□□□ 0.26
COL6A3-213ENST00000493475 PLEKHG3A1L390 1219 aa16.64■□□□□ 0.25
COL6A3-213ENST00000493475 NBPF8Q3BBV2 869 aa16.64■□□□□ 0.25
COL6A3-213ENST00000493475 DEFB132Q7Z7B7 95 aa16.64■□□□□ 0.25
COL6A3-213ENST00000493475 KIAA0232Q92628 1395 aa16.64■□□□□ 0.25
COL6A3-213ENST00000493475 NRAPQ86VF7 1730 aa16.63■□□□□ 0.25
COL6A3-213ENST00000493475 NLRP13Q86W25 1043 aa16.63■□□□□ 0.25
COL6A3-213ENST00000493475 STRN4Q9NRL3 753 aa16.63■□□□□ 0.25
COL6A3-213ENST00000493475 BRWD3Q6RI45 1802 aa16.63■□□□□ 0.25
COL6A3-213ENST00000493475 ZC3H6P61129 1189 aaKnown RBP16.62■□□□□ 0.25
COL6A3-213ENST00000493475 C11orf95C9JLR9 678 aaPredicted RBP16.6■□□□□ 0.25
COL6A3-213ENST00000493475 PDE3BQ13370 1112 aa16.6■□□□□ 0.25
COL6A3-213ENST00000493475 NUTM2GQ5VZR2 741 aa16.6■□□□□ 0.25
COL6A3-213ENST00000493475 FAM196AQ6ZSG2 479 aa16.6■□□□□ 0.25
COL6A3-213ENST00000493475 SPATA31A1Q5TZJ5 1347 aa16.6■□□□□ 0.25
COL6A3-213ENST00000493475 PPIP5K1Q6PFW1 1433 aa16.6■□□□□ 0.25
COL6A3-213ENST00000493475 CHRNA2Q15822 529 aa16.59■□□□□ 0.25
COL6A3-213ENST00000493475 EVC2Q86UK5 1308 aa16.58■□□□□ 0.24
COL6A3-213ENST00000493475 TOPAZ1Q8N9V7 1692 aa16.57■□□□□ 0.24
COL6A3-213ENST00000493475 CPDO75976 1380 aa16.57■□□□□ 0.24
COL6A3-213ENST00000493475 SLC4A2P04920 1241 aa16.57■□□□□ 0.24
COL6A3-213ENST00000493475 NBPF1Q3BBV0 1214 aa16.57■□□□□ 0.24
COL6A3-213ENST00000493475 USP35Q9P2H5 1018 aa16.57■□□□□ 0.24
COL6A3-213ENST00000493475 THRAP3Q9Y2W1 955 aaKnown RBP16.57■□□□□ 0.24
COL6A3-213ENST00000493475 RGPD1P0DJD0 1748 aa16.56■□□□□ 0.24
COL6A3-213ENST00000493475 CRYBG1Q9Y4K1 1723 aa16.56■□□□□ 0.24
COL6A3-213ENST00000493475 PHRF1Q9P1Y6 1649 aaKnown RBP16.56■□□□□ 0.24
COL6A3-213ENST00000493475 BARGINQ6ZT62 677 aa16.56■□□□□ 0.24
COL6A3-213ENST00000493475 TCP11L2Q8N4U5 519 aa16.56■□□□□ 0.24
COL6A3-213ENST00000493475 SSH2Q76I76 1423 aa16.55■□□□□ 0.24
COL6A3-213ENST00000493475 GCP02774 474 aa16.55■□□□□ 0.24
COL6A3-213ENST00000493475 CABP2Q9NPB3 220 aa16.55■□□□□ 0.24
COL6A3-213ENST00000493475 PARD3Q8TEW0 1356 aa16.54■□□□□ 0.24
COL6A3-213ENST00000493475 USP19O94966 1318 aa16.54■□□□□ 0.24
COL6A3-213ENST00000493475 THSD7AQ9UPZ6 1657 aa16.54■□□□□ 0.24
COL6A3-213ENST00000493475 DISP2A7MBM2 1401 aa16.53■□□□□ 0.24
COL6A3-213ENST00000493475 ROCK2O75116 1388 aaKnown RBP16.53■□□□□ 0.24
COL6A3-213ENST00000493475 NLRP6P59044 892 aa16.53■□□□□ 0.24
COL6A3-213ENST00000493475 EN1Q05925 392 aaPredicted RBP16.53■□□□□ 0.24
COL6A3-213ENST00000493475 ZNF692Q9BU19 519 aaPredicted RBP16.53■□□□□ 0.24
COL6A3-213ENST00000493475 ZBTB7CA1YPR0 619 aa16.52■□□□□ 0.24
COL6A3-213ENST00000493475 L3MBTL2Q969R5 705 aa16.52■□□□□ 0.24
COL6A3-213ENST00000493475 CABP1Q9NZU7 370 aa16.52■□□□□ 0.24
COL6A3-213ENST00000493475 NRKQ7Z2Y5 1582 aa16.51■□□□□ 0.23
COL6A3-213ENST00000493475 QRICH2Q9H0J4 1663 aa16.51■□□□□ 0.23
COL6A3-213ENST00000493475 TRIM37O94972 964 aa16.51■□□□□ 0.23
COL6A3-213ENST00000493475 APBA3O96018 575 aa16.51■□□□□ 0.23
COL6A3-213ENST00000493475 FAM182BQ5T319 152 aa16.51■□□□□ 0.23
COL6A3-213ENST00000493475 USP6P35125 1406 aa16.51■□□□□ 0.23
COL6A3-213ENST00000493475 PSDA5PKW4 1024 aaPredicted RBP16.5■□□□□ 0.23
COL6A3-213ENST00000493475 NBPF14Q5TI25 921 aa16.5■□□□□ 0.23
COL6A3-213ENST00000493475 LARP1Q6PKG0 1096 aaKnown RBP16.5■□□□□ 0.23
COL6A3-213ENST00000493475 KCNH5Q8NCM2 988 aa16.5■□□□□ 0.23
COL6A3-213ENST00000493475 NEUROD1Q13562 356 aa16.49■□□□□ 0.23
COL6A3-213ENST00000493475 LRP5O75197 1615 aa16.48■□□□□ 0.23
COL6A3-213ENST00000493475 CRB1P82279 1406 aa16.48■□□□□ 0.23
COL6A3-213ENST00000493475 CAMTA1Q9Y6Y1 1673 aa16.47■□□□□ 0.23
COL6A3-213ENST00000493475 R3HDM1Q15032 1099 aaKnown RBP16.47■□□□□ 0.23
COL6A3-213ENST00000493475 TOM1L2Q6ZVM7 507 aa16.47■□□□□ 0.23
COL6A3-213ENST00000493475 CDCA7Q9BWT1 371 aaPredicted RBP16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms