RNA–Protein interactions for RNA: ENST00000493256.1

LYSMD4-208, Transcript of LysM domain containing 4, human

TSL 3

Gene LYSMD4, Length 880 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LYSMD4-208	ENST00000493256	BRWD3	Q6RI45	1802 aa		32	■■■□□ 2.71
LYSMD4-208	ENST00000493256	COL14A1	Q05707	1796 aa	Known RBP	31.99	■■■□□ 2.71
LYSMD4-208	ENST00000493256	CCDC9	Q9Y3X0	531 aa	Known RBP	31.99	■■■□□ 2.71
LYSMD4-208	ENST00000493256	POLR3A	O14802	1390 aa	Predicted RBP	31.98	■■■□□ 2.71
LYSMD4-208	ENST00000493256	SIN3A	Q96ST3	1273 aa		31.98	■■■□□ 2.71
LYSMD4-208	ENST00000493256	CCDC61	Q9Y6R9	512 aa		31.98	■■■□□ 2.71
LYSMD4-208	ENST00000493256	CENPJ	Q9HC77	1338 aa	Predicted RBP	31.98	■■■□□ 2.71
LYSMD4-208	ENST00000493256	SEPT12	Q8IYM1	358 aa		31.97	■■■□□ 2.71
LYSMD4-208	ENST00000493256	BTG4	Q9NY30	223 aa		31.96	■■■□□ 2.71
LYSMD4-208	ENST00000493256	ACE	P12821	1306 aa		31.96	■■■□□ 2.71
LYSMD4-208	ENST00000493256	PLEKHG3	A1L390	1219 aa		31.94	■■■□□ 2.7
LYSMD4-208	ENST00000493256	ONECUT3	O60422	494 aa	Predicted RBP	31.94	■■■□□ 2.7
LYSMD4-208	ENST00000493256	QRICH2	Q9H0J4	1663 aa		31.93	■■■□□ 2.7
LYSMD4-208	ENST00000493256	NBPF8	Q3BBV2	869 aa		31.93	■■■□□ 2.7
LYSMD4-208	ENST00000493256	CCDC125	Q86Z20	511 aa		31.93	■■■□□ 2.7
LYSMD4-208	ENST00000493256	PHRF1	Q9P1Y6	1649 aa	Known RBP	31.91	■■■□□ 2.7
LYSMD4-208	ENST00000493256	TRPM1	Q7Z4N2	1603 aa		31.9	■■■□□ 2.7
LYSMD4-208	ENST00000493256	SRPK2	P78362	688 aa	Known RBP	31.9	■■■□□ 2.7
LYSMD4-208	ENST00000493256	NEUROD1	Q13562	356 aa		31.9	■■■□□ 2.7
LYSMD4-208	ENST00000493256	NUTM2G	Q5VZR2	741 aa		31.89	■■■□□ 2.7
LYSMD4-208	ENST00000493256	PRDM11	Q9NQV5	511 aa		31.89	■■■□□ 2.7
LYSMD4-208	ENST00000493256	CABP2	Q9NPB3	220 aa		31.88	■■■□□ 2.69
LYSMD4-208	ENST00000493256	PPIP5K1	Q6PFW1	1433 aa		31.87	■■■□□ 2.69
LYSMD4-208	ENST00000493256	KIAA0232	Q92628	1395 aa		31.87	■■■□□ 2.69
LYSMD4-208	ENST00000493256	BLM	P54132	1417 aa	Predicted RBP	31.85	■■■□□ 2.69
LYSMD4-208	ENST00000493256	FAM98C	Q17RN3	349 aa	Known RBP	31.85	■■■□□ 2.69
LYSMD4-208	ENST00000493256	KRT27	Q7Z3Y8	459 aa		31.84	■■■□□ 2.69
LYSMD4-208	ENST00000493256		A0A0G2JS52	829 aa		31.83	■■■□□ 2.69
LYSMD4-208	ENST00000493256	MYT1	Q01538	1121 aa		31.83	■■■□□ 2.69
LYSMD4-208	ENST00000493256	SPATA31A5	Q5VU36	1347 aa		31.82	■■■□□ 2.68
LYSMD4-208	ENST00000493256	SPATA31A7	Q8IWB4	1347 aa		31.82	■■■□□ 2.68
LYSMD4-208	ENST00000493256	ZC3H6	P61129	1189 aa	Known RBP	31.82	■■■□□ 2.68
LYSMD4-208	ENST00000493256	CHRNA2	Q15822	529 aa		31.82	■■■□□ 2.68
LYSMD4-208	ENST00000493256	ABTB2	Q8N961	1025 aa		31.81	■■■□□ 2.68
LYSMD4-208	ENST00000493256	ROCK2	O75116	1388 aa	Known RBP	31.81	■■■□□ 2.68
LYSMD4-208	ENST00000493256	NRK	Q7Z2Y5	1582 aa		31.8	■■■□□ 2.68
LYSMD4-208	ENST00000493256	USP19	O94966	1318 aa		31.77	■■■□□ 2.68
LYSMD4-208	ENST00000493256	CABP1	Q9NZU7	370 aa		31.77	■■■□□ 2.68
LYSMD4-208	ENST00000493256	ZRANB1	Q9UGI0	708 aa		31.75	■■■□□ 2.67
LYSMD4-208	ENST00000493256	THSD7A	Q9UPZ6	1657 aa		31.75	■■■□□ 2.67
LYSMD4-208	ENST00000493256	EVC2	Q86UK5	1308 aa		31.75	■■■□□ 2.67
LYSMD4-208	ENST00000493256	BRD4	O60885	1362 aa	Predicted RBP	31.74	■■■□□ 2.67
LYSMD4-208	ENST00000493256	STRN4	Q9NRL3	753 aa		31.74	■■■□□ 2.67
LYSMD4-208	ENST00000493256	USP6	P35125	1406 aa		31.74	■■■□□ 2.67
LYSMD4-208	ENST00000493256	DEFB132	Q7Z7B7	95 aa		31.73	■■■□□ 2.67
LYSMD4-208	ENST00000493256	SPATA31A1	Q5TZJ5	1347 aa		31.73	■■■□□ 2.67
LYSMD4-208	ENST00000493256	CPD	O75976	1380 aa		31.72	■■■□□ 2.67
LYSMD4-208	ENST00000493256	SF3B2	Q13435	895 aa	Known RBP	31.72	■■■□□ 2.67
LYSMD4-208	ENST00000493256	NLRP13	Q86W25	1043 aa		31.72	■■■□□ 2.67
LYSMD4-208	ENST00000493256	SRCAP	Q6ZRS2	3230 aa		31.7	■■■□□ 2.67
LYSMD4-208	ENST00000493256	LMO7	Q8WWI1	1683 aa		31.69	■■■□□ 2.66
LYSMD4-208	ENST00000493256	CAMTA1	Q9Y6Y1	1673 aa		31.69	■■■□□ 2.66
LYSMD4-208	ENST00000493256	GC	P02774	474 aa		31.68	■■■□□ 2.66
LYSMD4-208	ENST00000493256	SSH2	Q76I76	1423 aa		31.67	■■■□□ 2.66
LYSMD4-208	ENST00000493256	FAM182B	Q5T319	152 aa		31.66	■■■□□ 2.66
LYSMD4-208	ENST00000493256	EVA1C	P58658	441 aa		31.65	■■■□□ 2.66
LYSMD4-208	ENST00000493256	NLRP6	P59044	892 aa		31.63	■■■□□ 2.65
LYSMD4-208	ENST00000493256	PIK3C2A	O00443	1686 aa		31.63	■■■□□ 2.65
LYSMD4-208	ENST00000493256	SLIT3	O75094	1523 aa		31.62	■■■□□ 2.65
LYSMD4-208	ENST00000493256	LARP1	Q6PKG0	1096 aa	Known RBP	31.62	■■■□□ 2.65
LYSMD4-208	ENST00000493256	USP35	Q9P2H5	1018 aa		31.62	■■■□□ 2.65
LYSMD4-208	ENST00000493256	AKAP12	Q02952	1782 aa		31.6	■■■□□ 2.65
LYSMD4-208	ENST00000493256	RGPD1	P0DJD0	1748 aa		31.59	■■■□□ 2.65
LYSMD4-208	ENST00000493256	TONSL	Q96HA7	1378 aa		31.58	■■■□□ 2.65
LYSMD4-208	ENST00000493256	BARGIN	Q6ZT62	677 aa		31.58	■■■□□ 2.65
LYSMD4-208	ENST00000493256	CARD11	Q9BXL7	1154 aa		31.58	■■■□□ 2.65
LYSMD4-208	ENST00000493256	COL5A2	P05997	1499 aa	Predicted RBP	31.58	■■■□□ 2.65
LYSMD4-208	ENST00000493256	SBNO2	Q9Y2G9	1366 aa		31.57	■■■□□ 2.64
LYSMD4-208	ENST00000493256	BAG6	P46379	1132 aa		31.57	■■■□□ 2.64
LYSMD4-208	ENST00000493256	ZNF692	Q9BU19	519 aa	Predicted RBP	31.56	■■■□□ 2.64
LYSMD4-208	ENST00000493256	TTC21B	Q7Z4L5	1316 aa		31.55	■■■□□ 2.64
LYSMD4-208	ENST00000493256	ZBTB7C	A1YPR0	619 aa		31.55	■■■□□ 2.64
LYSMD4-208	ENST00000493256	TCP11L2	Q8N4U5	519 aa		31.55	■■■□□ 2.64
LYSMD4-208	ENST00000493256	CPSF1	Q10570	1443 aa	Known RBP	31.55	■■■□□ 2.64
LYSMD4-208	ENST00000493256	TNS1	Q9HBL0	1735 aa	Known RBP	31.53	■■■□□ 2.64
LYSMD4-208	ENST00000493256	AATK	Q6ZMQ8	1374 aa		31.53	■■■□□ 2.64
LYSMD4-208	ENST00000493256	THRAP3	Q9Y2W1	955 aa	Known RBP	31.5	■■■□□ 2.63
LYSMD4-208	ENST00000493256	KTN1	Q86UP2	1357 aa	Known RBP	31.5	■■■□□ 2.63
LYSMD4-208	ENST00000493256	COL18A1	P39060	1754 aa		31.5	■■■□□ 2.63
LYSMD4-208	ENST00000493256	TTC21A	Q8NDW8	1320 aa		31.49	■■■□□ 2.63
LYSMD4-208	ENST00000493256	EN1	Q05925	392 aa	Predicted RBP	31.49	■■■□□ 2.63
LYSMD4-208	ENST00000493256	FAM196A	Q6ZSG2	479 aa		31.49	■■■□□ 2.63
LYSMD4-208	ENST00000493256	DISP2	A7MBM2	1401 aa		31.49	■■■□□ 2.63
LYSMD4-208	ENST00000493256	CRB1	P82279	1406 aa		31.49	■■■□□ 2.63
LYSMD4-208	ENST00000493256	TRIM26	Q12899	539 aa	Predicted RBP	31.48	■■■□□ 2.63
LYSMD4-208	ENST00000493256	MON2	Q7Z3U7	1717 aa		31.48	■■■□□ 2.63
LYSMD4-208	ENST00000493256	PDE3B	Q13370	1112 aa		31.47	■■■□□ 2.63
LYSMD4-208	ENST00000493256	TRIM37	O94972	964 aa		31.45	■■■□□ 2.63
LYSMD4-208	ENST00000493256	PARP4	Q9UKK3	1724 aa	Known RBP	31.45	■■■□□ 2.63
LYSMD4-208	ENST00000493256	KCNH5	Q8NCM2	988 aa		31.44	■■■□□ 2.62
LYSMD4-208	ENST00000493256	AXIN2	Q9Y2T1	843 aa		31.44	■■■□□ 2.62
LYSMD4-208	ENST00000493256	CD163L1	Q9NR16	1453 aa		31.44	■■■□□ 2.62
LYSMD4-208	ENST00000493256	SOX12	O15370	315 aa		31.43	■■■□□ 2.62
LYSMD4-208	ENST00000493256	ARHGEF25	Q86VW2	580 aa		31.43	■■■□□ 2.62
LYSMD4-208	ENST00000493256	NFAT5	O94916	1531 aa		31.42	■■■□□ 2.62
LYSMD4-208	ENST00000493256	RGPD5	Q99666	1765 aa		31.39	■■■□□ 2.62
LYSMD4-208	ENST00000493256	PSD	A5PKW4	1024 aa	Predicted RBP	31.39	■■■□□ 2.62
LYSMD4-208	ENST00000493256	TOM1L2	Q6ZVM7	507 aa		31.39	■■■□□ 2.62
LYSMD4-208	ENST00000493256	TMC1	Q8TDI8	760 aa		31.39	■■■□□ 2.62
LYSMD4-208	ENST00000493256	EZH2	Q15910	746 aa	Known RBP	31.38	■■■□□ 2.61

Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms