RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 HAP1P54257 671 aaPredicted RBP25.76■■□□□ 1.71
COL9A3-214ENST00000490398 NUTM2GQ5VZR2 741 aa25.76■■□□□ 1.71
COL9A3-214ENST00000490398 SLIT2O94813 1529 aa25.74■■□□□ 1.71
COL9A3-214ENST00000490398 CLSPNQ9HAW4 1339 aa25.74■■□□□ 1.71
COL9A3-214ENST00000490398 ATRNO75882 1429 aa25.73■■□□□ 1.71
COL9A3-214ENST00000490398 SBNO2Q9Y2G9 1366 aa25.73■■□□□ 1.71
COL9A3-214ENST00000490398 RBM6P78332 1123 aaKnown RBP25.73■■□□□ 1.71
COL9A3-214ENST00000490398 FAM83GA6ND36 823 aa25.72■■□□□ 1.71
COL9A3-214ENST00000490398 TRPC5Q9UL62 973 aaPredicted RBP25.72■■□□□ 1.71
COL9A3-214ENST00000490398 CRYBG1Q9Y4K1 1723 aa25.71■■□□□ 1.71
COL9A3-214ENST00000490398 CCER1Q8TC90 406 aaPredicted RBP25.71■■□□□ 1.71
COL9A3-214ENST00000490398 RGS12O14924 1447 aa25.71■■□□□ 1.71
COL9A3-214ENST00000490398 ST20-MTHFSA0A0A6YYL1 179 aa25.7■■□□□ 1.7
COL9A3-214ENST00000490398 TESK2Q96S53 571 aa25.69■■□□□ 1.7
COL9A3-214ENST00000490398 UNC5CLQ8IV45 518 aa25.68■■□□□ 1.7
COL9A3-214ENST00000490398 CDK12Q9NYV4 1490 aaPredicted RBP25.67■■□□□ 1.7
COL9A3-214ENST00000490398 USP6P35125 1406 aa25.67■■□□□ 1.7
COL9A3-214ENST00000490398 SSH2Q76I76 1423 aa25.66■■□□□ 1.7
COL9A3-214ENST00000490398 ABTB2Q8N961 1025 aa25.66■■□□□ 1.7
COL9A3-214ENST00000490398 TIMELESSQ9UNS1 1208 aa25.65■■□□□ 1.7
COL9A3-214ENST00000490398 ATAD2Q6PL18 1390 aa25.64■■□□□ 1.69
COL9A3-214ENST00000490398 PLCH1Q4KWH8 1693 aa25.64■■□□□ 1.69
COL9A3-214ENST00000490398 GJD4Q96KN9 370 aaPredicted RBP25.63■■□□□ 1.69
COL9A3-214ENST00000490398 PHRF1Q9P1Y6 1649 aaKnown RBP25.63■■□□□ 1.69
COL9A3-214ENST00000490398 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.62■■□□□ 1.69
COL9A3-214ENST00000490398 KIAA0232Q92628 1395 aa25.61■■□□□ 1.69
COL9A3-214ENST00000490398 USP47Q96K76 1375 aa25.61■■□□□ 1.69
COL9A3-214ENST00000490398 ZC3H6P61129 1189 aaKnown RBP25.61■■□□□ 1.69
COL9A3-214ENST00000490398 CHRNA2Q15822 529 aa25.61■■□□□ 1.69
COL9A3-214ENST00000490398 BTG4Q9NY30 223 aa25.61■■□□□ 1.69
COL9A3-214ENST00000490398 CPSF1Q10570 1443 aaKnown RBP25.61■■□□□ 1.69
COL9A3-214ENST00000490398 USP19O94966 1318 aa25.61■■□□□ 1.69
COL9A3-214ENST00000490398 GLI3P10071 1580 aa25.61■■□□□ 1.69
COL9A3-214ENST00000490398 SLC12A5Q9H2X9 1139 aa25.6■■□□□ 1.69
COL9A3-214ENST00000490398 CD163L1Q9NR16 1453 aa25.6■■□□□ 1.69
COL9A3-214ENST00000490398 TTC21BQ7Z4L5 1316 aa25.59■■□□□ 1.69
COL9A3-214ENST00000490398 BRD4O60885 1362 aaPredicted RBP25.58■■□□□ 1.69
COL9A3-214ENST00000490398 NRKQ7Z2Y5 1582 aa25.58■■□□□ 1.69
COL9A3-214ENST00000490398 VPS72Q15906 364 aa25.58■■□□□ 1.69
COL9A3-214ENST00000490398 TMC1Q8TDI8 760 aa25.58■■□□□ 1.69
COL9A3-214ENST00000490398 PRDM11Q9NQV5 511 aa25.58■■□□□ 1.69
COL9A3-214ENST00000490398 NWD2Q9ULI1 1742 aa25.57■■□□□ 1.68
COL9A3-214ENST00000490398 COL14A1Q05707 1796 aaKnown RBP25.56■■□□□ 1.68
COL9A3-214ENST00000490398 PIK3C2AO00443 1686 aa25.56■■□□□ 1.68
COL9A3-214ENST00000490398 NLRP6P59044 892 aa25.56■■□□□ 1.68
COL9A3-214ENST00000490398 NLRP13Q86W25 1043 aa25.56■■□□□ 1.68
COL9A3-214ENST00000490398 ZNF692Q9BU19 519 aaPredicted RBP25.56■■□□□ 1.68
COL9A3-214ENST00000490398 NRAPQ86VF7 1730 aa25.56■■□□□ 1.68
COL9A3-214ENST00000490398 AKAP12Q02952 1782 aa25.56■■□□□ 1.68
COL9A3-214ENST00000490398 KTN1Q86UP2 1357 aaKnown RBP25.56■■□□□ 1.68
COL9A3-214ENST00000490398 GCP02774 474 aa25.54■■□□□ 1.68
COL9A3-214ENST00000490398 UPF1Q92900 1129 aaKnown RBP eCLIP25.54■■□□□ 1.68
COL9A3-214ENST00000490398 ZRANB1Q9UGI0 708 aa25.54■■□□□ 1.68
COL9A3-214ENST00000490398 CCDC9Q9Y3X0 531 aaKnown RBP25.53■■□□□ 1.68
COL9A3-214ENST00000490398 PUS7Q96PZ0 661 aaKnown RBP25.52■■□□□ 1.68
COL9A3-214ENST00000490398 SLIT3O75094 1523 aa25.5■■□□□ 1.67
COL9A3-214ENST00000490398 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.5■■□□□ 1.67
COL9A3-214ENST00000490398 EP400Q96L91 3159 aa25.5■■□□□ 1.67
COL9A3-214ENST00000490398 MON2Q7Z3U7 1717 aa25.49■■□□□ 1.67
COL9A3-214ENST00000490398 A0A1W2PP64 1363 aa25.49■■□□□ 1.67
COL9A3-214ENST00000490398 CPDO75976 1380 aa25.49■■□□□ 1.67
COL9A3-214ENST00000490398 TTC21AQ8NDW8 1320 aa25.48■■□□□ 1.67
COL9A3-214ENST00000490398 CAMTA1Q9Y6Y1 1673 aa25.48■■□□□ 1.67
COL9A3-214ENST00000490398 NME9Q86XW9 330 aa25.47■■□□□ 1.67
COL9A3-214ENST00000490398 SEPT12Q8IYM1 358 aa25.47■■□□□ 1.67
COL9A3-214ENST00000490398 STRN4Q9NRL3 753 aa25.47■■□□□ 1.67
COL9A3-214ENST00000490398 SPATA31A5Q5VU36 1347 aa25.46■■□□□ 1.67
COL9A3-214ENST00000490398 SPATA31A7Q8IWB4 1347 aa25.46■■□□□ 1.67
COL9A3-214ENST00000490398 ZBTB7CA1YPR0 619 aa25.46■■□□□ 1.67
COL9A3-214ENST00000490398 SOX12O15370 315 aa25.45■■□□□ 1.66
COL9A3-214ENST00000490398 ONECUT3O60422 494 aaPredicted RBP25.45■■□□□ 1.66
COL9A3-214ENST00000490398 TMF1P82094 1093 aa25.45■■□□□ 1.66
COL9A3-214ENST00000490398 FAM98CQ17RN3 349 aaKnown RBP25.45■■□□□ 1.66
COL9A3-214ENST00000490398 HDGFL2Q7Z4V5 671 aaPredicted RBP25.45■■□□□ 1.66
COL9A3-214ENST00000490398 LMO7Q8WWI1 1683 aa25.45■■□□□ 1.66
COL9A3-214ENST00000490398 TERF2IPQ9NYB0 399 aa25.43■■□□□ 1.66
COL9A3-214ENST00000490398 EDC4Q6P2E9 1401 aaKnown RBP25.41■■□□□ 1.66
COL9A3-214ENST00000490398 SLC24A1O60721 1099 aa25.41■■□□□ 1.66
COL9A3-214ENST00000490398 LARP1Q6PKG0 1096 aaKnown RBP25.41■■□□□ 1.66
COL9A3-214ENST00000490398 USP31Q70CQ4 1352 aa25.41■■□□□ 1.66
COL9A3-214ENST00000490398 SPATA31A1Q5TZJ5 1347 aa25.4■■□□□ 1.66
COL9A3-214ENST00000490398 ARHGEF25Q86VW2 580 aa25.39■■□□□ 1.66
COL9A3-214ENST00000490398 AXIN2Q9Y2T1 843 aa25.39■■□□□ 1.66
COL9A3-214ENST00000490398 NFAT5O94916 1531 aa25.38■■□□□ 1.65
COL9A3-214ENST00000490398 BRWD3Q6RI45 1802 aa25.38■■□□□ 1.65
COL9A3-214ENST00000490398 HSPA5P11021 654 aaKnown RBP25.38■■□□□ 1.65
COL9A3-214ENST00000490398 EVA1CP58658 441 aa25.38■■□□□ 1.65
COL9A3-214ENST00000490398 NINLQ9Y2I6 1382 aa25.38■■□□□ 1.65
COL9A3-214ENST00000490398 COL5A2P05997 1499 aaPredicted RBP25.37■■□□□ 1.65
COL9A3-214ENST00000490398 AATKQ6ZMQ8 1374 aa25.37■■□□□ 1.65
COL9A3-214ENST00000490398 USP35Q9P2H5 1018 aa25.37■■□□□ 1.65
COL9A3-214ENST00000490398 COL18A1P39060 1754 aa25.36■■□□□ 1.65
COL9A3-214ENST00000490398 A0A0G2JS52 829 aa25.36■■□□□ 1.65
COL9A3-214ENST00000490398 MYT1Q01538 1121 aa25.36■■□□□ 1.65
COL9A3-214ENST00000490398 ANKRD36BQ8N2N9 1353 aa25.35■■□□□ 1.65
COL9A3-214ENST00000490398 KCNH5Q8NCM2 988 aa25.35■■□□□ 1.65
COL9A3-214ENST00000490398 OVOS2A0A0J9YW53 1432 aa25.34■■□□□ 1.65
COL9A3-214ENST00000490398 OVOS2Q6IE36 1432 aa25.34■■□□□ 1.65
COL9A3-214ENST00000490398 KRT27Q7Z3Y8 459 aa25.33■■□□□ 1.65
COL9A3-214ENST00000490398 USP54Q70EL1 1684 aa25.32■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms