RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 MPNDQ8N594 471 aa7.54□□□□□ -1.2
DEPDC1-204ENST00000489862 NANOS1Q8WY41 292 aaKnown RBP7.54□□□□□ -1.2
DEPDC1-204ENST00000489862 C6orf118Q5T5N4 469 aa7.53□□□□□ -1.2
DEPDC1-204ENST00000489862 KRTAP4-12Q9BQ66 201 aa7.53□□□□□ -1.2
DEPDC1-204ENST00000489862 KCNV2Q8TDN2 545 aa7.52□□□□□ -1.2
DEPDC1-204ENST00000489862 BMP2P12643 396 aa7.51□□□□□ -1.21
DEPDC1-204ENST00000489862 RNFT1Q5M7Z0 435 aa7.5□□□□□ -1.21
DEPDC1-204ENST00000489862 PODNQ7Z5L7 613 aa7.5□□□□□ -1.21
DEPDC1-204ENST00000489862 TLL2Q9Y6L7 1015 aa7.5□□□□□ -1.21
DEPDC1-204ENST00000489862 VARSP26640 1264 aaKnown RBP7.49□□□□□ -1.21
DEPDC1-204ENST00000489862 HAP1P54257 671 aaPredicted RBP7.49□□□□□ -1.21
DEPDC1-204ENST00000489862 SH3BP2P78314 561 aa7.49□□□□□ -1.21
DEPDC1-204ENST00000489862 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.49□□□□□ -1.21
DEPDC1-204ENST00000489862 BEND7Q8N7W2 519 aaPredicted RBP7.49□□□□□ -1.21
DEPDC1-204ENST00000489862 JUNDP17535 347 aa7.49□□□□□ -1.21
DEPDC1-204ENST00000489862 BAG6P46379 1132 aa7.49□□□□□ -1.21
DEPDC1-204ENST00000489862 ARHGEF1Q92888 912 aaKnown RBP7.49□□□□□ -1.21
DEPDC1-204ENST00000489862 KRTAP9-9Q9BYP9 154 aa7.49□□□□□ -1.21
DEPDC1-204ENST00000489862 KRTAP9-4Q9BYQ2 154 aa7.49□□□□□ -1.21
DEPDC1-204ENST00000489862 KRTAP4-8A0A0G2JLE6 195 aa7.48□□□□□ -1.21
DEPDC1-204ENST00000489862 ITGB2P05107 769 aa7.48□□□□□ -1.21
DEPDC1-204ENST00000489862 MLLT3P42568 568 aaPredicted RBP7.47□□□□□ -1.21
DEPDC1-204ENST00000489862 NUDT12Q9BQG2 462 aa7.47□□□□□ -1.21
DEPDC1-204ENST00000489862 SOS2Q07890 1332 aaPredicted RBP7.47□□□□□ -1.21
DEPDC1-204ENST00000489862 KLF16Q9BXK1 252 aaPredicted RBP7.46□□□□□ -1.21
DEPDC1-204ENST00000489862 DNMT3LQ9UJW3 386 aa7.46□□□□□ -1.21
DEPDC1-204ENST00000489862 ZIC2O95409 532 aaPredicted RBP7.45□□□□□ -1.22
DEPDC1-204ENST00000489862 SV2AQ7L0J3 742 aa7.45□□□□□ -1.22
DEPDC1-204ENST00000489862 ADAMTS2O95450 1211 aa7.45□□□□□ -1.22
DEPDC1-204ENST00000489862 PTSQ03393 145 aa7.45□□□□□ -1.22
DEPDC1-204ENST00000489862 PTCRAQ6ISU1 281 aaPredicted RBP7.45□□□□□ -1.22
DEPDC1-204ENST00000489862 LYPD4Q6UWN0 246 aa7.45□□□□□ -1.22
DEPDC1-204ENST00000489862 LINC00528Q8N1L1 170 aa7.45□□□□□ -1.22
DEPDC1-204ENST00000489862 SLC24A1O60721 1099 aa7.43□□□□□ -1.22
DEPDC1-204ENST00000489862 CNTNAP5Q8WYK1 1306 aa7.43□□□□□ -1.22
DEPDC1-204ENST00000489862 CELA2BP08218 269 aaPredicted RBP7.42□□□□□ -1.22
DEPDC1-204ENST00000489862 FURINP09958 794 aa7.42□□□□□ -1.22
DEPDC1-204ENST00000489862 HIC1Q14526 733 aa7.42□□□□□ -1.22
DEPDC1-204ENST00000489862 P3H3Q8IVL6 736 aa7.42□□□□□ -1.22
DEPDC1-204ENST00000489862 CCDC155Q8N6L0 562 aa7.42□□□□□ -1.22
DEPDC1-204ENST00000489862 KDM2AQ9Y2K7 1162 aa7.42□□□□□ -1.22
DEPDC1-204ENST00000489862 SRSF11Q05519 484 aaKnown RBP7.41□□□□□ -1.22
DEPDC1-204ENST00000489862 VWA5B2Q8N398 1253 aa7.41□□□□□ -1.22
DEPDC1-204ENST00000489862 ZFAND3Q9H8U3 227 aa7.41□□□□□ -1.22
DEPDC1-204ENST00000489862 CDC14CA4D256 554 aa7.41□□□□□ -1.22
DEPDC1-204ENST00000489862 FAM174AQ8TBP5 190 aa7.41□□□□□ -1.22
DEPDC1-204ENST00000489862 SEMA3EO15041 775 aa7.4□□□□□ -1.22
DEPDC1-204ENST00000489862 SPTLC1O15269 473 aa7.4□□□□□ -1.22
DEPDC1-204ENST00000489862 USP46P62068 366 aa7.4□□□□□ -1.22
DEPDC1-204ENST00000489862 MEIOBQ8N635 442 aa7.39□□□□□ -1.23
DEPDC1-204ENST00000489862 ITPKCQ96DU7 683 aa7.39□□□□□ -1.23
DEPDC1-204ENST00000489862 TSEN34Q9BSV6 310 aaKnown RBP7.39□□□□□ -1.23
DEPDC1-204ENST00000489862 TTLL8A6PVC2 850 aa7.38□□□□□ -1.23
DEPDC1-204ENST00000489862 KDM4AO75164 1064 aa7.38□□□□□ -1.23
DEPDC1-204ENST00000489862 NR5A1Q13285 461 aa7.38□□□□□ -1.23
DEPDC1-204ENST00000489862 LINC01559Q495D7 138 aa7.38□□□□□ -1.23
DEPDC1-204ENST00000489862 CCNYL3P0C7X3 344 aa7.38□□□□□ -1.23
DEPDC1-204ENST00000489862 NEDD1Q8NHV4 660 aa7.38□□□□□ -1.23
DEPDC1-204ENST00000489862 BAP1Q92560 729 aa7.38□□□□□ -1.23
DEPDC1-204ENST00000489862 ITGA6P23229 1130 aa7.37□□□□□ -1.23
DEPDC1-204ENST00000489862 ALYREFQ86V81 257 aaKnown RBP7.36□□□□□ -1.23
DEPDC1-204ENST00000489862 ZNF511Q8NB15 262 aa7.36□□□□□ -1.23
DEPDC1-204ENST00000489862 UNC93B1Q9H1C4 597 aa7.36□□□□□ -1.23
DEPDC1-204ENST00000489862 SLC35F4A4IF30 521 aa7.35□□□□□ -1.23
DEPDC1-204ENST00000489862 CDK15Q96Q40 435 aa7.35□□□□□ -1.23
DEPDC1-204ENST00000489862 RETREG3Q86VR2 466 aa7.34□□□□□ -1.23
DEPDC1-204ENST00000489862 MS4A1P11836 297 aa7.34□□□□□ -1.24
DEPDC1-204ENST00000489862 ARID5BQ14865 1188 aa7.34□□□□□ -1.24
DEPDC1-204ENST00000489862 VSIG10Q8N0Z9 540 aa7.33□□□□□ -1.24
DEPDC1-204ENST00000489862 NLRP7Q8WX94 980 aa7.33□□□□□ -1.24
DEPDC1-204ENST00000489862 GOLGA2P5Q9HBQ8 144 aa7.33□□□□□ -1.24
DEPDC1-204ENST00000489862 TESPA1A2RU30 521 aaPredicted RBP7.32□□□□□ -1.24
DEPDC1-204ENST00000489862 FIGNL2A6NMB9 653 aa7.32□□□□□ -1.24
DEPDC1-204ENST00000489862 CD46P15529 392 aa7.32□□□□□ -1.24
DEPDC1-204ENST00000489862 ZMYM1Q5SVZ6 1142 aa7.32□□□□□ -1.24
DEPDC1-204ENST00000489862 SH3RF1Q7Z6J0 888 aa7.32□□□□□ -1.24
DEPDC1-204ENST00000489862 EVA1BQ9NVM1 165 aa7.31□□□□□ -1.24
DEPDC1-204ENST00000489862 GNPATO15228 680 aa7.3□□□□□ -1.24
DEPDC1-204ENST00000489862 BCRP11274 1271 aa7.3□□□□□ -1.24
DEPDC1-204ENST00000489862 KCNH2Q12809 1159 aa7.3□□□□□ -1.24
DEPDC1-204ENST00000489862 PTPRNQ16849 979 aa7.3□□□□□ -1.24
DEPDC1-204ENST00000489862 RBM26Q5T8P6 1007 aaKnown RBP7.3□□□□□ -1.24
DEPDC1-204ENST00000489862 KRBA1A5PL33 1030 aa7.29□□□□□ -1.24
DEPDC1-204ENST00000489862 HOXA2O43364 376 aa7.28□□□□□ -1.24
DEPDC1-204ENST00000489862 NR3C2P08235 984 aa7.28□□□□□ -1.24
DEPDC1-204ENST00000489862 SCO2A0A1W2PP80 73 aa7.27□□□□□ -1.25
DEPDC1-204ENST00000489862 HLA-CQ95604 372 aa7.27□□□□□ -1.25
DEPDC1-204ENST00000489862 SMYD5Q6GMV2 418 aa7.27□□□□□ -1.25
DEPDC1-204ENST00000489862 KRTAP19-1Q8IUB9 90 aa7.27□□□□□ -1.25
DEPDC1-204ENST00000489862 SYMPKQ92797 1274 aaKnown RBP7.26□□□□□ -1.25
DEPDC1-204ENST00000489862 MBIPQ9NS73 344 aa7.26□□□□□ -1.25
DEPDC1-204ENST00000489862 LRRC4BQ9NT99 713 aa7.26□□□□□ -1.25
DEPDC1-204ENST00000489862 KRTAP4-7Q9BYR0 210 aa7.25□□□□□ -1.25
DEPDC1-204ENST00000489862 EMILIN1Q9Y6C2 1016 aa7.24□□□□□ -1.25
DEPDC1-204ENST00000489862 SEMA6BQ9H3T3 888 aa7.23□□□□□ -1.25
DEPDC1-204ENST00000489862 MKL2Q9ULH7 1088 aa7.23□□□□□ -1.25
DEPDC1-204ENST00000489862 SPINT1O43278 529 aa7.22□□□□□ -1.25
DEPDC1-204ENST00000489862 GRM5P41594 1212 aa7.22□□□□□ -1.25
DEPDC1-204ENST00000489862 GAS6Q14393 721 aa7.22□□□□□ -1.25
DEPDC1-204ENST00000489862 FOXR1Q6PIV2 292 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 80.6 ms