RNA–Protein interactions for RNA: ENST00000489861.2

COL9A1-209, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 3

Gene COL9A1, Length 243 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-209ENST00000489861 SBNO1A3KN83 1393 aa11.39□□□□□ -0.59
COL9A1-209ENST00000489861 ARHGEF10O15013 1369 aa11.38□□□□□ -0.59
COL9A1-209ENST00000489861 SPATA31A1Q5TZJ5 1347 aa11.37□□□□□ -0.59
COL9A1-209ENST00000489861 RRBP1Q9P2E9 1410 aaKnown RBP11.37□□□□□ -0.59
COL9A1-209ENST00000489861 RGPD3A6NKT7 1758 aaPredicted RBP11.37□□□□□ -0.59
COL9A1-209ENST00000489861 RGPD4Q7Z3J3 1758 aa11.37□□□□□ -0.59
COL9A1-209ENST00000489861 PSME1Q06323 249 aa11.37□□□□□ -0.59
COL9A1-209ENST00000489861 NUP155O75694 1391 aa11.37□□□□□ -0.59
COL9A1-209ENST00000489861 PLEKHH1Q9ULM0 1364 aa11.37□□□□□ -0.59
COL9A1-209ENST00000489861 CRYBG1Q9Y4K1 1723 aa11.37□□□□□ -0.59
COL9A1-209ENST00000489861 SBF2Q86WG5 1849 aa11.37□□□□□ -0.59
COL9A1-209ENST00000489861 DLC1Q96QB1 1528 aa11.36□□□□□ -0.59
COL9A1-209ENST00000489861 TRPM3Q9HCF6 1732 aaPredicted RBP11.36□□□□□ -0.59
COL9A1-209ENST00000489861 IFT172Q9UG01 1749 aa11.36□□□□□ -0.59
COL9A1-209ENST00000489861 PHF8Q9UPP1 1060 aa11.36□□□□□ -0.59
COL9A1-209ENST00000489861 SGIP1Q9BQI5 828 aa11.35□□□□□ -0.59
COL9A1-209ENST00000489861 NRXN1Q9ULB1 1477 aa11.35□□□□□ -0.59
COL9A1-209ENST00000489861 ALS2Q96Q42 1657 aa11.35□□□□□ -0.59
COL9A1-209ENST00000489861 TECPR2O15040 1411 aa11.35□□□□□ -0.59
COL9A1-209ENST00000489861 PPLO60437 1756 aa11.34□□□□□ -0.59
COL9A1-209ENST00000489861 VGFO15240 615 aaPredicted RBP11.34□□□□□ -0.59
COL9A1-209ENST00000489861 HSPA6P17066 643 aa11.33□□□□□ -0.6
COL9A1-209ENST00000489861 PDE3BQ13370 1112 aa11.32□□□□□ -0.6
COL9A1-209ENST00000489861 STK26Q9P289 416 aa11.32□□□□□ -0.6
COL9A1-209ENST00000489861 PEAK1Q9H792 1746 aa11.32□□□□□ -0.6
COL9A1-209ENST00000489861 PLSCR1O15162 318 aa11.31□□□□□ -0.6
COL9A1-209ENST00000489861 FAM50AQ14320 339 aaKnown RBP11.31□□□□□ -0.6
COL9A1-209ENST00000489861 GPR162Q16538 588 aa11.31□□□□□ -0.6
COL9A1-209ENST00000489861 PTF1AQ7RTS3 328 aa11.31□□□□□ -0.6
COL9A1-209ENST00000489861 PROM2Q8N271 834 aa11.31□□□□□ -0.6
COL9A1-209ENST00000489861 USP35Q9P2H5 1018 aa11.31□□□□□ -0.6
COL9A1-209ENST00000489861 KNDC1Q76NI1 1749 aa11.31□□□□□ -0.6
COL9A1-209ENST00000489861 CAPN15O75808 1086 aa11.3□□□□□ -0.6
COL9A1-209ENST00000489861 PRDM11Q9NQV5 511 aa11.3□□□□□ -0.6
COL9A1-209ENST00000489861 STRN4Q9NRL3 753 aa11.3□□□□□ -0.6
COL9A1-209ENST00000489861 MAP3K5Q99683 1374 aa11.29□□□□□ -0.6
COL9A1-209ENST00000489861 CHRNA2Q15822 529 aa11.29□□□□□ -0.6
COL9A1-209ENST00000489861 BARGINQ6ZT62 677 aa11.29□□□□□ -0.6
COL9A1-209ENST00000489861 PMFBP1Q8TBY8 1022 aa11.29□□□□□ -0.6
COL9A1-209ENST00000489861 BCL11BQ9C0K0 894 aaPredicted RBP11.29□□□□□ -0.6
COL9A1-209ENST00000489861 ARXQ96QS3 562 aa11.28□□□□□ -0.6
COL9A1-209ENST00000489861 MTFR1LQ9H019 292 aa11.28□□□□□ -0.6
COL9A1-209ENST00000489861 PARP4Q9UKK3 1724 aaKnown RBP11.27□□□□□ -0.61
COL9A1-209ENST00000489861 SLC34A2O95436 690 aa11.27□□□□□ -0.61
COL9A1-209ENST00000489861 COL13A1Q5TAT6 717 aaPredicted RBP11.27□□□□□ -0.61
COL9A1-209ENST00000489861 KIAA0232Q92628 1395 aa11.27□□□□□ -0.61
COL9A1-209ENST00000489861 ABCC11Q96J66 1382 aa11.27□□□□□ -0.61
COL9A1-209ENST00000489861 TMEM132EQ6IEE7 984 aa11.26□□□□□ -0.61
COL9A1-209ENST00000489861 SSH2Q76I76 1423 aa11.26□□□□□ -0.61
COL9A1-209ENST00000489861 ATP10DQ9P241 1426 aa11.26□□□□□ -0.61
COL9A1-209ENST00000489861 SLC15A2Q16348 729 aa11.25□□□□□ -0.61
COL9A1-209ENST00000489861 RPGRIP1LQ68CZ1 1315 aa11.25□□□□□ -0.61
COL9A1-209ENST00000489861 LARP1Q6PKG0 1096 aaKnown RBP11.24□□□□□ -0.61
COL9A1-209ENST00000489861 PELP1Q8IZL8 1130 aaKnown RBP11.24□□□□□ -0.61
COL9A1-209ENST00000489861 ADGRF5Q8IZF2 1346 aa11.24□□□□□ -0.61
COL9A1-209ENST00000489861 ROCK1Q13464 1354 aa11.24□□□□□ -0.61
COL9A1-209ENST00000489861 PHRF1Q9P1Y6 1649 aaKnown RBP11.24□□□□□ -0.61
COL9A1-209ENST00000489861 TCP11L2Q8N4U5 519 aa11.23□□□□□ -0.61
COL9A1-209ENST00000489861 STK32BQ9NY57 414 aa11.23□□□□□ -0.61
COL9A1-209ENST00000489861 OVOS2A0A0G2JMS6 1433 aa11.22□□□□□ -0.61
COL9A1-209ENST00000489861 OVOS2A0A0J9YW53 1432 aa11.22□□□□□ -0.61
COL9A1-209ENST00000489861 PRELPP51888 382 aa11.22□□□□□ -0.61
COL9A1-209ENST00000489861 ZC3H6P61129 1189 aaKnown RBP11.22□□□□□ -0.61
COL9A1-209ENST00000489861 OVOS2Q6IE36 1432 aa11.22□□□□□ -0.61
COL9A1-209ENST00000489861 DNAJC5GQ8N7S2 189 aa11.22□□□□□ -0.61
COL9A1-209ENST00000489861 YTHDC2Q9H6S0 1430 aaKnown RBP11.21□□□□□ -0.61
COL9A1-209ENST00000489861 ACIN1Q9UKV3 1341 aaKnown RBP11.21□□□□□ -0.61
COL9A1-209ENST00000489861 YBX3P16989 372 aaKnown RBP eCLIP11.21□□□□□ -0.61
COL9A1-209ENST00000489861 TXNRD1Q16881 649 aa11.21□□□□□ -0.61
COL9A1-209ENST00000489861 PCNTO95613 3336 aa11.21□□□□□ -0.62
COL9A1-209ENST00000489861 LMO7Q8WWI1 1683 aa11.2□□□□□ -0.62
COL9A1-209ENST00000489861 LRRC37A3O60309 1634 aa11.2□□□□□ -0.62
COL9A1-209ENST00000489861 ATP7BP35670 1465 aa11.2□□□□□ -0.62
COL9A1-209ENST00000489861 EVA1CP58658 441 aa11.2□□□□□ -0.62
COL9A1-209ENST00000489861 NLGN2Q8NFZ4 835 aa11.2□□□□□ -0.62
COL9A1-209ENST00000489861 GPBP1L1Q9HC44 474 aaPredicted RBP11.2□□□□□ -0.62
COL9A1-209ENST00000489861 COL24A1Q17RW2 1714 aa11.2□□□□□ -0.62
COL9A1-209ENST00000489861 ANKARQ7Z5J8 1434 aa11.19□□□□□ -0.62
COL9A1-209ENST00000489861 GPRASP1Q5JY77 1395 aa11.19□□□□□ -0.62
COL9A1-209ENST00000489861 C11orf95C9JLR9 678 aaPredicted RBP11.19□□□□□ -0.62
COL9A1-209ENST00000489861 KLHL34Q8N239 644 aa11.19□□□□□ -0.62
COL9A1-209ENST00000489861 PAK3O75914 559 aaPredicted RBP11.18□□□□□ -0.62
COL9A1-209ENST00000489861 SAFB2Q14151 953 aaKnown RBP eCLIP11.18□□□□□ -0.62
COL9A1-209ENST00000489861 ZNF526Q8TF50 670 aaPredicted RBP11.18□□□□□ -0.62
COL9A1-209ENST00000489861 SIRT1Q96EB6 747 aa11.18□□□□□ -0.62
COL9A1-209ENST00000489861 AKAP12Q02952 1782 aa11.18□□□□□ -0.62
COL9A1-209ENST00000489861 ADCY9O60503 1353 aa11.17□□□□□ -0.62
COL9A1-209ENST00000489861 PAPPAQ13219 1627 aa11.17□□□□□ -0.62
COL9A1-209ENST00000489861 PRR36Q9H6K5 1346 aa11.17□□□□□ -0.62
COL9A1-209ENST00000489861 TNS4Q8IZW8 715 aa11.17□□□□□ -0.62
COL9A1-209ENST00000489861 THRAP3Q9Y2W1 955 aaKnown RBP11.17□□□□□ -0.62
COL9A1-209ENST00000489861 DHX57Q6P158 1386 aaKnown RBP11.16□□□□□ -0.62
COL9A1-209ENST00000489861 APLP2Q06481 763 aa11.16□□□□□ -0.62
COL9A1-209ENST00000489861 TOPAZ1Q8N9V7 1692 aa11.16□□□□□ -0.62
COL9A1-209ENST00000489861 KAT6BQ8WYB5 2073 aa11.15□□□□□ -0.62
COL9A1-209ENST00000489861 WNK3Q9BYP7 1800 aa11.15□□□□□ -0.62
COL9A1-209ENST00000489861 GRIN3BO60391 1043 aa11.15□□□□□ -0.62
COL9A1-209ENST00000489861 APLP1P51693 650 aa11.15□□□□□ -0.62
COL9A1-209ENST00000489861 NUTM2GQ5VZR2 741 aa11.15□□□□□ -0.62
COL9A1-209ENST00000489861 MARCH10Q8NA82 808 aaPredicted RBP11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms