RNA–Protein interactions for RNA: ENST00000489452.1

LINC00173-204, long intergenic non-protein coding RNA 173, humanhuman

TSL 3

Gene LINC00173, Length 543 nt, Biotype lincRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00173-204ENST00000489452 NBPF1Q3BBV0 1214 aa19.42■□□□□ 0.7
LINC00173-204ENST00000489452 PRDM11Q9NQV5 511 aa19.4■□□□□ 0.7
LINC00173-204ENST00000489452 BLMP54132 1417 aaPredicted RBP19.4■□□□□ 0.7
LINC00173-204ENST00000489452 PLCH1Q4KWH8 1693 aa19.39■□□□□ 0.69
LINC00173-204ENST00000489452 BRWD3Q6RI45 1802 aa19.39■□□□□ 0.69
LINC00173-204ENST00000489452 ZC3H6P61129 1189 aaKnown RBP19.38■□□□□ 0.69
LINC00173-204ENST00000489452 CHRNA2Q15822 529 aa19.38■□□□□ 0.69
LINC00173-204ENST00000489452 TRPM3Q9HCF6 1732 aaPredicted RBP19.37■□□□□ 0.69
LINC00173-204ENST00000489452 ACEP12821 1306 aa19.37■□□□□ 0.69
LINC00173-204ENST00000489452 NBPF8Q3BBV2 869 aa19.37■□□□□ 0.69
LINC00173-204ENST00000489452 FAM182BQ5T319 152 aa19.37■□□□□ 0.69
LINC00173-204ENST00000489452 CCDC61Q9Y6R9 512 aa19.37■□□□□ 0.69
LINC00173-204ENST00000489452 ABCA3Q99758 1704 aa19.37■□□□□ 0.69
LINC00173-204ENST00000489452 NWD2Q9ULI1 1742 aa19.36■□□□□ 0.69
LINC00173-204ENST00000489452 STRN4Q9NRL3 753 aa19.35■□□□□ 0.69
LINC00173-204ENST00000489452 KIAA0232Q92628 1395 aa19.34■□□□□ 0.69
LINC00173-204ENST00000489452 ALS2Q96Q42 1657 aa19.34■□□□□ 0.69
LINC00173-204ENST00000489452 SPATA31A5Q5VU36 1347 aa19.34■□□□□ 0.69
LINC00173-204ENST00000489452 SPATA31A7Q8IWB4 1347 aa19.34■□□□□ 0.69
LINC00173-204ENST00000489452 SRPK2P78362 688 aaKnown RBP19.34■□□□□ 0.69
LINC00173-204ENST00000489452 ATP7BP35670 1465 aa19.34■□□□□ 0.69
LINC00173-204ENST00000489452 ARHGEF28Q8N1W1 1705 aaKnown RBP19.34■□□□□ 0.69
LINC00173-204ENST00000489452 ABTB2Q8N961 1025 aa19.33■□□□□ 0.68
LINC00173-204ENST00000489452 CABP2Q9NPB3 220 aa19.33■□□□□ 0.68
LINC00173-204ENST00000489452 PLEKHG3A1L390 1219 aa19.32■□□□□ 0.68
LINC00173-204ENST00000489452 EVA1CP58658 441 aa19.31■□□□□ 0.68
LINC00173-204ENST00000489452 USP35Q9P2H5 1018 aa19.31■□□□□ 0.68
LINC00173-204ENST00000489452 COL14A1Q05707 1796 aaKnown RBP19.31■□□□□ 0.68
LINC00173-204ENST00000489452 L3MBTL2Q969R5 705 aa19.3■□□□□ 0.68
LINC00173-204ENST00000489452 CENPJQ9HC77 1338 aaPredicted RBP19.29■□□□□ 0.68
LINC00173-204ENST00000489452 BAG6P46379 1132 aa19.29■□□□□ 0.68
LINC00173-204ENST00000489452 NEUROD1Q13562 356 aa19.29■□□□□ 0.68
LINC00173-204ENST00000489452 SIN3AQ96ST3 1273 aa19.29■□□□□ 0.68
LINC00173-204ENST00000489452 POLR3AO14802 1390 aaPredicted RBP19.28■□□□□ 0.68
LINC00173-204ENST00000489452 NRAPQ86VF7 1730 aa19.28■□□□□ 0.68
LINC00173-204ENST00000489452 SPATA31A1Q5TZJ5 1347 aa19.27■□□□□ 0.68
LINC00173-204ENST00000489452 PSDA5PKW4 1024 aaPredicted RBP19.27■□□□□ 0.68
LINC00173-204ENST00000489452 EN1Q05925 392 aaPredicted RBP19.27■□□□□ 0.68
LINC00173-204ENST00000489452 ITSN1Q15811 1721 aa19.26■□□□□ 0.67
LINC00173-204ENST00000489452 ZBTB7CA1YPR0 619 aa19.26■□□□□ 0.67
LINC00173-204ENST00000489452 CABP1Q9NZU7 370 aa19.26■□□□□ 0.67
LINC00173-204ENST00000489452 PPIP5K1Q6PFW1 1433 aa19.25■□□□□ 0.67
LINC00173-204ENST00000489452 LARP1Q6PKG0 1096 aaKnown RBP19.24■□□□□ 0.67
LINC00173-204ENST00000489452 NLRP13Q86W25 1043 aa19.24■□□□□ 0.67
LINC00173-204ENST00000489452 KIAA1210Q9ULL0 1709 aa19.23■□□□□ 0.67
LINC00173-204ENST00000489452 CRYBG1Q9Y4K1 1723 aa19.22■□□□□ 0.67
LINC00173-204ENST00000489452 TRIM37O94972 964 aa19.22■□□□□ 0.67
LINC00173-204ENST00000489452 GCP02774 474 aa19.22■□□□□ 0.67
LINC00173-204ENST00000489452 NLRP6P59044 892 aa19.21■□□□□ 0.67
LINC00173-204ENST00000489452 PDE3BQ13370 1112 aa19.21■□□□□ 0.67
LINC00173-204ENST00000489452 FAM196AQ6ZSG2 479 aa19.2■□□□□ 0.66
LINC00173-204ENST00000489452 USP19O94966 1318 aa19.19■□□□□ 0.66
LINC00173-204ENST00000489452 PHRF1Q9P1Y6 1649 aaKnown RBP19.18■□□□□ 0.66
LINC00173-204ENST00000489452 TOPAZ1Q8N9V7 1692 aa19.18■□□□□ 0.66
LINC00173-204ENST00000489452 EZH2Q15910 746 aaKnown RBP19.18■□□□□ 0.66
LINC00173-204ENST00000489452 TCP11L2Q8N4U5 519 aa19.18■□□□□ 0.66
LINC00173-204ENST00000489452 CAMTA1Q9Y6Y1 1673 aa19.17■□□□□ 0.66
LINC00173-204ENST00000489452 SSH2Q76I76 1423 aa19.17■□□□□ 0.66
LINC00173-204ENST00000489452 APBA3O96018 575 aa19.17■□□□□ 0.66
LINC00173-204ENST00000489452 R3HDM1Q15032 1099 aaKnown RBP19.17■□□□□ 0.66
LINC00173-204ENST00000489452 BARGINQ6ZT62 677 aa19.17■□□□□ 0.66
LINC00173-204ENST00000489452 EVC2Q86UK5 1308 aa19.17■□□□□ 0.66
LINC00173-204ENST00000489452 CPDO75976 1380 aa19.16■□□□□ 0.66
LINC00173-204ENST00000489452 THSD7AQ9UPZ6 1657 aa19.15■□□□□ 0.66
LINC00173-204ENST00000489452 SOX12O15370 315 aa19.14■□□□□ 0.65
LINC00173-204ENST00000489452 ROCK2O75116 1388 aaKnown RBP19.14■□□□□ 0.65
LINC00173-204ENST00000489452 CAMKK2Q96RR4 588 aa19.13■□□□□ 0.65
LINC00173-204ENST00000489452 USP6P35125 1406 aa19.13■□□□□ 0.65
LINC00173-204ENST00000489452 QRICH2Q9H0J4 1663 aa19.12■□□□□ 0.65
LINC00173-204ENST00000489452 NRKQ7Z2Y5 1582 aa19.12■□□□□ 0.65
LINC00173-204ENST00000489452 BRD4O60885 1362 aaPredicted RBP19.11■□□□□ 0.65
LINC00173-204ENST00000489452 THRAP3Q9Y2W1 955 aaKnown RBP19.11■□□□□ 0.65
LINC00173-204ENST00000489452 TOM1L2Q6ZVM7 507 aa19.1■□□□□ 0.65
LINC00173-204ENST00000489452 ZNF692Q9BU19 519 aaPredicted RBP19.1■□□□□ 0.65
LINC00173-204ENST00000489452 RGPD1P0DJD0 1748 aa19.1■□□□□ 0.65
LINC00173-204ENST00000489452 TTC21BQ7Z4L5 1316 aa19.09■□□□□ 0.65
LINC00173-204ENST00000489452 AXIN2Q9Y2T1 843 aa19.09■□□□□ 0.65
LINC00173-204ENST00000489452 COL5A2P05997 1499 aaPredicted RBP19.08■□□□□ 0.64
LINC00173-204ENST00000489452 AATKQ6ZMQ8 1374 aa19.07■□□□□ 0.64
LINC00173-204ENST00000489452 DISP2A7MBM2 1401 aa19.07■□□□□ 0.64
LINC00173-204ENST00000489452 LMO7Q8WWI1 1683 aa19.06■□□□□ 0.64
LINC00173-204ENST00000489452 CRB1P82279 1406 aa19.06■□□□□ 0.64
LINC00173-204ENST00000489452 TRPM1Q7Z4N2 1603 aa19.05■□□□□ 0.64
LINC00173-204ENST00000489452 CSB-PGBD3P0DP91 1061 aa19.05■□□□□ 0.64
LINC00173-204ENST00000489452 DDB1Q16531 1140 aa19.05■□□□□ 0.64
LINC00173-204ENST00000489452 ARHGEF25Q86VW2 580 aa19.05■□□□□ 0.64
LINC00173-204ENST00000489452 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.05■□□□□ 0.64
LINC00173-204ENST00000489452 CARD11Q9BXL7 1154 aa19.05■□□□□ 0.64
LINC00173-204ENST00000489452 TNS1Q9HBL0 1735 aaKnown RBP19.05■□□□□ 0.64
LINC00173-204ENST00000489452 KCNH5Q8NCM2 988 aa19.04■□□□□ 0.64
LINC00173-204ENST00000489452 TMC1Q8TDI8 760 aa19.04■□□□□ 0.64
LINC00173-204ENST00000489452 NBPF14Q5TI25 921 aa19.03■□□□□ 0.64
LINC00173-204ENST00000489452 KTN1Q86UP2 1357 aaKnown RBP19.03■□□□□ 0.64
LINC00173-204ENST00000489452 WDR17Q8IZU2 1322 aa19.01■□□□□ 0.63
LINC00173-204ENST00000489452 TTC21AQ8NDW8 1320 aa19.01■□□□□ 0.63
LINC00173-204ENST00000489452 SLIT3O75094 1523 aa19.01■□□□□ 0.63
LINC00173-204ENST00000489452 PTF1AQ7RTS3 328 aa19■□□□□ 0.63
LINC00173-204ENST00000489452 PARD3Q8TEW0 1356 aa19■□□□□ 0.63
LINC00173-204ENST00000489452 PIK3C2AO00443 1686 aa19■□□□□ 0.63
LINC00173-204ENST00000489452 MARCH10Q8NA82 808 aaPredicted RBP18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 103.6 ms