RNA–Protein interactions for RNA: ENST00000489451.1

ACTN4-206, Transcript of actinin alpha 4, humanhuman

TSL 3

Gene ACTN4, Length 654 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN4-206ENST00000489451 LMOD2Q6P5Q4 547 aa17.25■□□□□ 0.35
ACTN4-206ENST00000489451 COL14A1Q05707 1796 aaKnown RBP17.25■□□□□ 0.35
ACTN4-206ENST00000489451 ONECUT3O60422 494 aaPredicted RBP17.24■□□□□ 0.35
ACTN4-206ENST00000489451 HAP1P54257 671 aaPredicted RBP17.24■□□□□ 0.35
ACTN4-206ENST00000489451 STAC3Q96MF2 364 aa17.24■□□□□ 0.35
ACTN4-206ENST00000489451 EIF3AQ14152 1382 aaKnown RBP17.24■□□□□ 0.35
ACTN4-206ENST00000489451 PHRF1Q9P1Y6 1649 aaKnown RBP17.23■□□□□ 0.35
ACTN4-206ENST00000489451 SEPT12Q8IYM1 358 aa17.23■□□□□ 0.35
ACTN4-206ENST00000489451 SENP3-EIF4A1A0A087X0R7 540 aa17.22■□□□□ 0.35
ACTN4-206ENST00000489451 BAG6P46379 1132 aa17.22■□□□□ 0.35
ACTN4-206ENST00000489451 GPRASP1Q5JY77 1395 aa17.21■□□□□ 0.35
ACTN4-206ENST00000489451 THSD7AQ9UPZ6 1657 aa17.2■□□□□ 0.34
ACTN4-206ENST00000489451 NBPF1Q3BBV0 1214 aa17.19■□□□□ 0.34
ACTN4-206ENST00000489451 NUDT16Q96DE0 195 aaKnown RBP17.19■□□□□ 0.34
ACTN4-206ENST00000489451 BTG4Q9NY30 223 aa17.19■□□□□ 0.34
ACTN4-206ENST00000489451 POLR3AO14802 1390 aaPredicted RBP17.17■□□□□ 0.34
ACTN4-206ENST00000489451 RGPD1P0DJD0 1748 aa17.17■□□□□ 0.34
ACTN4-206ENST00000489451 R3HDM1Q15032 1099 aaKnown RBP17.17■□□□□ 0.34
ACTN4-206ENST00000489451 NGDNQ8NEJ9 315 aaKnown RBP17.17■□□□□ 0.34
ACTN4-206ENST00000489451 CDK19Q9BWU1 502 aa17.17■□□□□ 0.34
ACTN4-206ENST00000489451 DCAF8L1A6NGE4 600 aa17.16■□□□□ 0.34
ACTN4-206ENST00000489451 CCDC9Q9Y3X0 531 aaKnown RBP17.16■□□□□ 0.34
ACTN4-206ENST00000489451 NRKQ7Z2Y5 1582 aa17.15■□□□□ 0.34
ACTN4-206ENST00000489451 FAM98CQ17RN3 349 aaKnown RBP17.15■□□□□ 0.34
ACTN4-206ENST00000489451 KRT27Q7Z3Y8 459 aa17.15■□□□□ 0.34
ACTN4-206ENST00000489451 PAK3O75914 559 aaPredicted RBP17.14■□□□□ 0.33
ACTN4-206ENST00000489451 SPATA31A5Q5VU36 1347 aa17.14■□□□□ 0.33
ACTN4-206ENST00000489451 SPATA31A7Q8IWB4 1347 aa17.14■□□□□ 0.33
ACTN4-206ENST00000489451 KIAA0232Q92628 1395 aa17.14■□□□□ 0.33
ACTN4-206ENST00000489451 ACEP12821 1306 aa17.13■□□□□ 0.33
ACTN4-206ENST00000489451 QRICH2Q9H0J4 1663 aa17.13■□□□□ 0.33
ACTN4-206ENST00000489451 LMO7Q8WWI1 1683 aa17.12■□□□□ 0.33
ACTN4-206ENST00000489451 TNS1Q9HBL0 1735 aaKnown RBP17.12■□□□□ 0.33
ACTN4-206ENST00000489451 PLEKHG3A1L390 1219 aa17.11■□□□□ 0.33
ACTN4-206ENST00000489451 CHRNA2Q15822 529 aa17.11■□□□□ 0.33
ACTN4-206ENST00000489451 NBPF8Q3BBV2 869 aa17.11■□□□□ 0.33
ACTN4-206ENST00000489451 NUTM2GQ5VZR2 741 aa17.11■□□□□ 0.33
ACTN4-206ENST00000489451 PRDM11Q9NQV5 511 aa17.11■□□□□ 0.33
ACTN4-206ENST00000489451 FAM182BQ5T319 152 aa17.1■□□□□ 0.33
ACTN4-206ENST00000489451 CCDC61Q9Y6R9 512 aa17.1■□□□□ 0.33
ACTN4-206ENST00000489451 TRPM1Q7Z4N2 1603 aa17.09■□□□□ 0.33
ACTN4-206ENST00000489451 CAMTA1Q9Y6Y1 1673 aa17.09■□□□□ 0.33
ACTN4-206ENST00000489451 USP19O94966 1318 aa17.08■□□□□ 0.32
ACTN4-206ENST00000489451 SPATA31A1Q5TZJ5 1347 aa17.08■□□□□ 0.32
ACTN4-206ENST00000489451 EN1Q05925 392 aaPredicted RBP17.08■□□□□ 0.32
ACTN4-206ENST00000489451 PPIP5K1Q6PFW1 1433 aa17.07■□□□□ 0.32
ACTN4-206ENST00000489451 CENPJQ9HC77 1338 aaPredicted RBP17.07■□□□□ 0.32
ACTN4-206ENST00000489451 A0A0G2JS52 829 aa17.07■□□□□ 0.32
ACTN4-206ENST00000489451 ZC3H6P61129 1189 aaKnown RBP17.07■□□□□ 0.32
ACTN4-206ENST00000489451 MYT1Q01538 1121 aa17.07■□□□□ 0.32
ACTN4-206ENST00000489451 L3MBTL2Q969R5 705 aa17.06■□□□□ 0.32
ACTN4-206ENST00000489451 CABP2Q9NPB3 220 aa17.06■□□□□ 0.32
ACTN4-206ENST00000489451 SSH2Q76I76 1423 aa17.05■□□□□ 0.32
ACTN4-206ENST00000489451 CPDO75976 1380 aa17.05■□□□□ 0.32
ACTN4-206ENST00000489451 PPP1R1BQ9UD71 204 aaPredicted RBP17.05■□□□□ 0.32
ACTN4-206ENST00000489451 ZNF784Q8NCA9 323 aaPredicted RBP17.04■□□□□ 0.32
ACTN4-206ENST00000489451 SIN3AQ96ST3 1273 aa17.04■□□□□ 0.32
ACTN4-206ENST00000489451 DISP2A7MBM2 1401 aa17.04■□□□□ 0.32
ACTN4-206ENST00000489451 STRN4Q9NRL3 753 aa17.03■□□□□ 0.32
ACTN4-206ENST00000489451 PIK3C2AO00443 1686 aa17.03■□□□□ 0.32
ACTN4-206ENST00000489451 USP6P35125 1406 aa17.03■□□□□ 0.32
ACTN4-206ENST00000489451 SLIT3O75094 1523 aa17.02■□□□□ 0.32
ACTN4-206ENST00000489451 SRPK2P78362 688 aaKnown RBP17.02■□□□□ 0.32
ACTN4-206ENST00000489451 ABTB2Q8N961 1025 aa17.02■□□□□ 0.32
ACTN4-206ENST00000489451 C1QTNF8P60827 252 aa17.01■□□□□ 0.31
ACTN4-206ENST00000489451 LARP1Q6PKG0 1096 aaKnown RBP17.01■□□□□ 0.31
ACTN4-206ENST00000489451 COL18A1P39060 1754 aa17.01■□□□□ 0.31
ACTN4-206ENST00000489451 NINLQ9Y2I6 1382 aa17.01■□□□□ 0.31
ACTN4-206ENST00000489451 COL5A2P05997 1499 aaPredicted RBP17■□□□□ 0.31
ACTN4-206ENST00000489451 AKAP12Q02952 1782 aa17■□□□□ 0.31
ACTN4-206ENST00000489451 PARP4Q9UKK3 1724 aaKnown RBP16.99■□□□□ 0.31
ACTN4-206ENST00000489451 GCP02774 474 aa16.99■□□□□ 0.31
ACTN4-206ENST00000489451 BARGINQ6ZT62 677 aa16.99■□□□□ 0.31
ACTN4-206ENST00000489451 CABP1Q9NZU7 370 aa16.99■□□□□ 0.31
ACTN4-206ENST00000489451 USP35Q9P2H5 1018 aa16.98■□□□□ 0.31
ACTN4-206ENST00000489451 RREB1Q92766 1687 aa16.97■□□□□ 0.31
ACTN4-206ENST00000489451 EZH2Q15910 746 aaKnown RBP16.97■□□□□ 0.31
ACTN4-206ENST00000489451 BRD4O60885 1362 aaPredicted RBP16.97■□□□□ 0.31
ACTN4-206ENST00000489451 TRIM37O94972 964 aa16.96■□□□□ 0.31
ACTN4-206ENST00000489451 NLRP13Q86W25 1043 aa16.96■□□□□ 0.31
ACTN4-206ENST00000489451 WNK3Q9BYP7 1800 aa16.96■□□□□ 0.3
ACTN4-206ENST00000489451 PEAK1Q9H792 1746 aa16.96■□□□□ 0.3
ACTN4-206ENST00000489451 CAMKK2Q96RR4 588 aa16.95■□□□□ 0.3
ACTN4-206ENST00000489451 CHD4Q14839 1912 aa16.95■□□□□ 0.3
ACTN4-206ENST00000489451 NUP188Q5SRE5 1749 aa16.95■□□□□ 0.3
ACTN4-206ENST00000489451 LRRC37A3O60309 1634 aa16.95■□□□□ 0.3
ACTN4-206ENST00000489451 ROCK2O75116 1388 aaKnown RBP16.94■□□□□ 0.3
ACTN4-206ENST00000489451 TCP11L2Q8N4U5 519 aa16.94■□□□□ 0.3
ACTN4-206ENST00000489451 RGPD5Q99666 1765 aa16.94■□□□□ 0.3
ACTN4-206ENST00000489451 EVA1CP58658 441 aa16.93■□□□□ 0.3
ACTN4-206ENST00000489451 FAM196AQ6ZSG2 479 aa16.93■□□□□ 0.3
ACTN4-206ENST00000489451 SPON1Q9HCB6 807 aa16.93■□□□□ 0.3
ACTN4-206ENST00000489451 MON2Q7Z3U7 1717 aa16.93■□□□□ 0.3
ACTN4-206ENST00000489451 AATKQ6ZMQ8 1374 aa16.92■□□□□ 0.3
ACTN4-206ENST00000489451 NEUROD1Q13562 356 aa16.92■□□□□ 0.3
ACTN4-206ENST00000489451 CRB1P82279 1406 aa16.92■□□□□ 0.3
ACTN4-206ENST00000489451 CPSF1Q10570 1443 aaKnown RBP16.92■□□□□ 0.3
ACTN4-206ENST00000489451 EVC2Q86UK5 1308 aa16.92■□□□□ 0.3
ACTN4-206ENST00000489451 SBF2Q86WG5 1849 aa16.91■□□□□ 0.3
ACTN4-206ENST00000489451 NFAT5O94916 1531 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms