RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 SCAF1Q9H7N4 1312 aaKnown RBP15.55■□□□□ 0.08
C9orf3-220ENST00000489318 RBM33Q96EV2 1170 aaKnown RBP15.55■□□□□ 0.08
C9orf3-220ENST00000489318 MSH6P52701 1360 aa15.54■□□□□ 0.08
C9orf3-220ENST00000489318 NUTM2FA1L443 756 aa15.54■□□□□ 0.08
C9orf3-220ENST00000489318 CNGB1Q14028 1251 aaPredicted RBP15.54■□□□□ 0.08
C9orf3-220ENST00000489318 TTC21AQ8NDW8 1320 aa15.53■□□□□ 0.08
C9orf3-220ENST00000489318 MORC1Q86VD1 984 aa15.53■□□□□ 0.08
C9orf3-220ENST00000489318 USP31Q70CQ4 1352 aa15.52■□□□□ 0.08
C9orf3-220ENST00000489318 TTC21BQ7Z4L5 1316 aa15.52■□□□□ 0.08
C9orf3-220ENST00000489318 C14orf37Q86TY3 774 aa15.52■□□□□ 0.08
C9orf3-220ENST00000489318 PNISRQ8TF01 805 aaKnown RBP15.52■□□□□ 0.08
C9orf3-220ENST00000489318 MAP2P11137 1827 aaKnown RBP15.52■□□□□ 0.07
C9orf3-220ENST00000489318 COL3A1P02461 1466 aaPredicted RBP15.52■□□□□ 0.07
C9orf3-220ENST00000489318 AATKQ6ZMQ8 1374 aa15.51■□□□□ 0.07
C9orf3-220ENST00000489318 ALS2Q96Q42 1657 aa15.51■□□□□ 0.07
C9orf3-220ENST00000489318 PHF8Q9UPP1 1060 aa15.51■□□□□ 0.07
C9orf3-220ENST00000489318 CADPS2Q86UW7 1296 aa15.5■□□□□ 0.07
C9orf3-220ENST00000489318 GGNBP2Q9H3C7 697 aa15.5■□□□□ 0.07
C9orf3-220ENST00000489318 BLMP54132 1417 aaPredicted RBP15.5■□□□□ 0.07
C9orf3-220ENST00000489318 PMFBP1Q8TBY8 1022 aa15.49■□□□□ 0.07
C9orf3-220ENST00000489318 CDK12Q9NYV4 1490 aaPredicted RBP15.48■□□□□ 0.07
C9orf3-220ENST00000489318 NHSL1Q5SYE7 1610 aa15.48■□□□□ 0.07
C9orf3-220ENST00000489318 NME9Q86XW9 330 aa15.48■□□□□ 0.07
C9orf3-220ENST00000489318 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.48■□□□□ 0.07
C9orf3-220ENST00000489318 NGDNQ8NEJ9 315 aaKnown RBP15.48■□□□□ 0.07
C9orf3-220ENST00000489318 PHRF1Q9P1Y6 1649 aaKnown RBP15.47■□□□□ 0.07
C9orf3-220ENST00000489318 ATF3P18847 181 aa15.47■□□□□ 0.07
C9orf3-220ENST00000489318 YTHDC1Q96MU7 727 aaKnown RBP15.47■□□□□ 0.07
C9orf3-220ENST00000489318 PNPLA6Q8IY17 1366 aa15.47■□□□□ 0.07
C9orf3-220ENST00000489318 CRYBG1Q9Y4K1 1723 aa15.46■□□□□ 0.07
C9orf3-220ENST00000489318 PEAK1Q9H792 1746 aa15.46■□□□□ 0.06
C9orf3-220ENST00000489318 SLIT3O75094 1523 aa15.45■□□□□ 0.06
C9orf3-220ENST00000489318 ESCO1Q5FWF5 840 aa15.45■□□□□ 0.06
C9orf3-220ENST00000489318 PXDNQ92626 1479 aa15.45■□□□□ 0.06
C9orf3-220ENST00000489318 FAM9BQ8IZU0 186 aa15.44■□□□□ 0.06
C9orf3-220ENST00000489318 COG3Q96JB2 828 aa15.44■□□□□ 0.06
C9orf3-220ENST00000489318 ORAI2Q96SN7 254 aa15.44■□□□□ 0.06
C9orf3-220ENST00000489318 MED1Q15648 1581 aaPredicted RBP15.44■□□□□ 0.06
C9orf3-220ENST00000489318 NFAT5O94916 1531 aa15.43■□□□□ 0.06
C9orf3-220ENST00000489318 LTN1O94822 1766 aa15.42■□□□□ 0.06
C9orf3-220ENST00000489318 MTHFSP49914 203 aa15.42■□□□□ 0.06
C9orf3-220ENST00000489318 ZRANB1Q9UGI0 708 aa15.42■□□□□ 0.06
C9orf3-220ENST00000489318 SBNO1A3KN83 1393 aa15.41■□□□□ 0.06
C9orf3-220ENST00000489318 RGPD1P0DJD0 1748 aa15.4■□□□□ 0.06
C9orf3-220ENST00000489318 TNNT2P45379 298 aaPredicted RBP15.4■□□□□ 0.06
C9orf3-220ENST00000489318 CFAP53Q96M91 514 aa15.4■□□□□ 0.06
C9orf3-220ENST00000489318 KIF24Q5T7B8 1368 aa15.39■□□□□ 0.05
C9orf3-220ENST00000489318 CENPBP07199 599 aaPredicted RBP15.39■□□□□ 0.05
C9orf3-220ENST00000489318 POLKQ9UBT6 870 aa15.39■□□□□ 0.05
C9orf3-220ENST00000489318 TNS3Q68CZ2 1445 aa15.39■□□□□ 0.05
C9orf3-220ENST00000489318 NPHP3Q7Z494 1330 aa15.39■□□□□ 0.05
C9orf3-220ENST00000489318 IQSEC2Q5JU85 1478 aa15.39■□□□□ 0.05
C9orf3-220ENST00000489318 ABCA3Q99758 1704 aa15.38■□□□□ 0.05
C9orf3-220ENST00000489318 AHDC1Q5TGY3 1603 aaPredicted RBP15.38■□□□□ 0.05
C9orf3-220ENST00000489318 USP19O94966 1318 aa15.38■□□□□ 0.05
C9orf3-220ENST00000489318 ZBED9Q6R2W3 1325 aa15.38■□□□□ 0.05
C9orf3-220ENST00000489318 ROBO1Q9Y6N7 1651 aa15.38■□□□□ 0.05
C9orf3-220ENST00000489318 FOXO3O43524 673 aa15.37■□□□□ 0.05
C9orf3-220ENST00000489318 HNRNPUQ00839 825 aaKnown RBP eCLIP15.37■□□□□ 0.05
C9orf3-220ENST00000489318 PSME1Q06323 249 aa15.37■□□□□ 0.05
C9orf3-220ENST00000489318 BRINP3Q76B58 766 aa15.37■□□□□ 0.05
C9orf3-220ENST00000489318 WDR43Q15061 677 aaKnown RBP eCLIP15.36■□□□□ 0.05
C9orf3-220ENST00000489318 RTL1A6NKG5 1358 aa15.36■□□□□ 0.05
C9orf3-220ENST00000489318 ABCC6O95255 1503 aa15.35■□□□□ 0.05
C9orf3-220ENST00000489318 KRT28Q7Z3Y7 464 aa15.35■□□□□ 0.05
C9orf3-220ENST00000489318 ABTB2Q8N961 1025 aa15.35■□□□□ 0.05
C9orf3-220ENST00000489318 SLAIN2Q9P270 581 aa15.35■□□□□ 0.05
C9orf3-220ENST00000489318 ADAMTS8Q9UP79 889 aa15.35■□□□□ 0.05
C9orf3-220ENST00000489318 EMILIN1Q9Y6C2 1016 aa15.35■□□□□ 0.05
C9orf3-220ENST00000489318 NLRP6P59044 892 aa15.34■□□□□ 0.05
C9orf3-220ENST00000489318 SOS2Q07890 1332 aaPredicted RBP15.34■□□□□ 0.05
C9orf3-220ENST00000489318 FLT4P35916 1363 aa15.34■□□□□ 0.05
C9orf3-220ENST00000489318 CAMTA1Q9Y6Y1 1673 aa15.32■□□□□ 0.04
C9orf3-220ENST00000489318 PAK3O75914 559 aaPredicted RBP15.32■□□□□ 0.04
C9orf3-220ENST00000489318 FBLN1P23142 703 aa15.32■□□□□ 0.04
C9orf3-220ENST00000489318 MAP3K19Q56UN5 1328 aa15.32■□□□□ 0.04
C9orf3-220ENST00000489318 ARHGEF10O15013 1369 aa15.32■□□□□ 0.04
C9orf3-220ENST00000489318 COL22A1Q8NFW1 1626 aaPredicted RBP15.32■□□□□ 0.04
C9orf3-220ENST00000489318 DIAPH1O60610 1272 aaKnown RBP15.31■□□□□ 0.04
C9orf3-220ENST00000489318 RRS1Q15050 365 aaKnown RBP15.31■□□□□ 0.04
C9orf3-220ENST00000489318 SPATA31A3Q5VYP0 1347 aa15.31■□□□□ 0.04
C9orf3-220ENST00000489318 COL18A1P39060 1754 aa15.3■□□□□ 0.04
C9orf3-220ENST00000489318 XPCQ01831 940 aaPredicted RBP15.3■□□□□ 0.04
C9orf3-220ENST00000489318 KCNH5Q8NCM2 988 aa15.3■□□□□ 0.04
C9orf3-220ENST00000489318 NUDCQ9Y266 331 aa15.3■□□□□ 0.04
C9orf3-220ENST00000489318 IL13P35225 146 aa15.29■□□□□ 0.04
C9orf3-220ENST00000489318 FAM208AQ9UK61 1670 aaKnown RBP15.28■□□□□ 0.04
C9orf3-220ENST00000489318 COL16A1Q07092 1604 aaPredicted RBP15.28■□□□□ 0.04
C9orf3-220ENST00000489318 AEBP2Q6ZN18 517 aaPredicted RBP15.28■□□□□ 0.04
C9orf3-220ENST00000489318 NCBP3Q53F19 620 aaKnown RBP15.27■□□□□ 0.04
C9orf3-220ENST00000489318 NUTM2GQ5VZR2 741 aa15.27■□□□□ 0.04
C9orf3-220ENST00000489318 NGEFQ8N5V2 710 aa15.27■□□□□ 0.04
C9orf3-220ENST00000489318 DDX17Q92841 729 aaKnown RBP15.27■□□□□ 0.04
C9orf3-220ENST00000489318 LMO7Q8WWI1 1683 aa15.27■□□□□ 0.03
C9orf3-220ENST00000489318 PHLPP1O60346 1717 aa15.26■□□□□ 0.03
C9orf3-220ENST00000489318 ZNF521Q96K83 1311 aa15.25■□□□□ 0.03
C9orf3-220ENST00000489318 PPM1GO15355 546 aaPredicted RBP15.25■□□□□ 0.03
C9orf3-220ENST00000489318 RUNDC1Q96C34 613 aa15.25■□□□□ 0.03
C9orf3-220ENST00000489318 RGPD5Q99666 1765 aa15.25■□□□□ 0.03
C9orf3-220ENST00000489318 NCAPD2Q15021 1401 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms