RNA–Protein interactions for RNA: ENST00000489247.1

ATG4A-208, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-208ENST00000489247 MAPKBP1O60336 1514 aa8.15□□□□□ -1.1
ATG4A-208ENST00000489247 GPATCH8Q9UKJ3 1502 aaKnown RBP8.15□□□□□ -1.1
ATG4A-208ENST00000489247 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.15□□□□□ -1.1
ATG4A-208ENST00000489247 ABCC2Q92887 1545 aa8.14□□□□□ -1.11
ATG4A-208ENST00000489247 RNF40O75150 1001 aa8.14□□□□□ -1.11
ATG4A-208ENST00000489247 MDM2Q00987 491 aaPredicted RBP8.14□□□□□ -1.11
ATG4A-208ENST00000489247 NEUROD2Q15784 382 aa8.14□□□□□ -1.11
ATG4A-208ENST00000489247 HPS5Q9UPZ3 1129 aa8.14□□□□□ -1.11
ATG4A-208ENST00000489247 TRIM66O15016 1216 aa8.13□□□□□ -1.11
ATG4A-208ENST00000489247 AK7Q96M32 723 aa8.13□□□□□ -1.11
ATG4A-208ENST00000489247 REPIN1Q9BWE0 567 aaKnown RBP8.13□□□□□ -1.11
ATG4A-208ENST00000489247 TIMELESSQ9UNS1 1208 aa8.13□□□□□ -1.11
ATG4A-208ENST00000489247 ABCC5O15440 1437 aa8.12□□□□□ -1.11
ATG4A-208ENST00000489247 DAPK1P53355 1430 aa8.12□□□□□ -1.11
ATG4A-208ENST00000489247 DNMT1P26358 1616 aaKnown RBP8.12□□□□□ -1.11
ATG4A-208ENST00000489247 STK17AQ9UEE5 414 aa8.12□□□□□ -1.11
ATG4A-208ENST00000489247 ADGRL2O95490 1459 aa8.12□□□□□ -1.11
ATG4A-208ENST00000489247 ITSN2Q9NZM3 1697 aa8.11□□□□□ -1.11
ATG4A-208ENST00000489247 KIF14Q15058 1648 aa8.11□□□□□ -1.11
ATG4A-208ENST00000489247 PLEKHD1A6NEE1 506 aa8.11□□□□□ -1.11
ATG4A-208ENST00000489247 SLC10A3P09131 477 aa8.11□□□□□ -1.11
ATG4A-208ENST00000489247 ITGAEP38570 1179 aa8.11□□□□□ -1.11
ATG4A-208ENST00000489247 HDGFP51858 240 aaKnown RBP8.11□□□□□ -1.11
ATG4A-208ENST00000489247 DAXXQ9UER7 740 aaPredicted RBP8.11□□□□□ -1.11
ATG4A-208ENST00000489247 KDM5BQ9UGL1 1544 aa8.11□□□□□ -1.11
ATG4A-208ENST00000489247 SHANK2Q9UPX8 1470 aa8.11□□□□□ -1.11
ATG4A-208ENST00000489247 ERCC6L2Q5T890 1561 aa8.1□□□□□ -1.11
ATG4A-208ENST00000489247 POTECB2RU33 542 aa8.1□□□□□ -1.11
ATG4A-208ENST00000489247 TSR3Q9UJK0 312 aaKnown RBP8.1□□□□□ -1.11
ATG4A-208ENST00000489247 CAMSAP2Q08AD1 1489 aa8.1□□□□□ -1.11
ATG4A-208ENST00000489247 GCC2Q8IWJ2 1684 aa8.1□□□□□ -1.11
ATG4A-208ENST00000489247 PPP4CP60510 307 aa8.09□□□□□ -1.11
ATG4A-208ENST00000489247 AMHR2Q16671 573 aa8.09□□□□□ -1.11
ATG4A-208ENST00000489247 TMEM132AQ24JP5 1023 aa8.09□□□□□ -1.11
ATG4A-208ENST00000489247 SLF2Q8IX21 1173 aa8.09□□□□□ -1.11
ATG4A-208ENST00000489247 TMUB1Q9BVT8 246 aa8.09□□□□□ -1.11
ATG4A-208ENST00000489247 DDX11L8A8MPP1 907 aa8.08□□□□□ -1.12
ATG4A-208ENST00000489247 ARHGEF5Q12774 1597 aa8.08□□□□□ -1.12
ATG4A-208ENST00000489247 NCOA1Q15788 1441 aa8.07□□□□□ -1.12
ATG4A-208ENST00000489247 APLP1P51693 650 aa8.07□□□□□ -1.12
ATG4A-208ENST00000489247 PDE4DQ08499 809 aa8.07□□□□□ -1.12
ATG4A-208ENST00000489247 TTLL12Q14166 644 aaPredicted RBP8.07□□□□□ -1.12
ATG4A-208ENST00000489247 PARP9Q8IXQ6 854 aa8.07□□□□□ -1.12
ATG4A-208ENST00000489247 GPCPD1Q9NPB8 672 aa8.07□□□□□ -1.12
ATG4A-208ENST00000489247 CFDP1Q9UEE9 299 aaPredicted RBP8.07□□□□□ -1.12
ATG4A-208ENST00000489247 MBD5Q9P267 1494 aa8.06□□□□□ -1.12
ATG4A-208ENST00000489247 KIAA1107Q9UPP5 1409 aa8.06□□□□□ -1.12
ATG4A-208ENST00000489247 ARID3CA6NKF2 412 aa8.06□□□□□ -1.12
ATG4A-208ENST00000489247 CLCN1P35523 988 aa8.06□□□□□ -1.12
ATG4A-208ENST00000489247 GPBP1L1Q9HC44 474 aaPredicted RBP8.06□□□□□ -1.12
ATG4A-208ENST00000489247 ARAP3Q8WWN8 1544 aa8.06□□□□□ -1.12
ATG4A-208ENST00000489247 DENND4BO75064 1496 aaPredicted RBP8.06□□□□□ -1.12
ATG4A-208ENST00000489247 ZNF644Q9H582 1327 aaPredicted RBP8.05□□□□□ -1.12
ATG4A-208ENST00000489247 PREX2Q70Z35 1606 aa8.05□□□□□ -1.12
ATG4A-208ENST00000489247 RSPH4AQ5TD94 716 aa8.05□□□□□ -1.12
ATG4A-208ENST00000489247 PPP1R18Q6NYC8 613 aa8.05□□□□□ -1.12
ATG4A-208ENST00000489247 GIGYF2Q6Y7W6 1299 aaKnown RBP8.05□□□□□ -1.12
ATG4A-208ENST00000489247 RDH13Q8NBN7 331 aa8.05□□□□□ -1.12
ATG4A-208ENST00000489247 FAM217BQ9NTX9 383 aaPredicted RBP8.05□□□□□ -1.12
ATG4A-208ENST00000489247 PLEKHH2Q8IVE3 1493 aa8.05□□□□□ -1.12
ATG4A-208ENST00000489247 CDC42BPAQ5VT25 1732 aa8.04□□□□□ -1.12
ATG4A-208ENST00000489247 CFHP08603 1231 aa8.04□□□□□ -1.12
ATG4A-208ENST00000489247 CROCC2H7BZ55 1655 aa8.04□□□□□ -1.12
ATG4A-208ENST00000489247 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.03□□□□□ -1.12
ATG4A-208ENST00000489247 MAST1Q9Y2H9 1570 aa8.03□□□□□ -1.12
ATG4A-208ENST00000489247 ANKRD30AQ9BXX3 1397 aa8.03□□□□□ -1.12
ATG4A-208ENST00000489247 CD46P15529 392 aa8.03□□□□□ -1.12
ATG4A-208ENST00000489247 SLC4A3P48751 1232 aa8.03□□□□□ -1.12
ATG4A-208ENST00000489247 MYT1Q01538 1121 aa8.03□□□□□ -1.12
ATG4A-208ENST00000489247 GTF3C3Q9Y5Q9 886 aa8.03□□□□□ -1.12
ATG4A-208ENST00000489247 PLCH2O75038 1416 aa8.03□□□□□ -1.12
ATG4A-208ENST00000489247 CCDC141Q6ZP82 1450 aa8.02□□□□□ -1.13
ATG4A-208ENST00000489247 MS4A1P11836 297 aa8.02□□□□□ -1.13
ATG4A-208ENST00000489247 SSTR3P32745 418 aaPredicted RBP8.02□□□□□ -1.13
ATG4A-208ENST00000489247 SULF1Q8IWU6 871 aa8.02□□□□□ -1.13
ATG4A-208ENST00000489247 ZCCHC11Q5TAX3 1644 aaKnown RBP8.02□□□□□ -1.13
ATG4A-208ENST00000489247 KDM5DQ9BY66 1539 aa8.02□□□□□ -1.13
ATG4A-208ENST00000489247 C9orf84Q5VXU9 1444 aa8.02□□□□□ -1.13
ATG4A-208ENST00000489247 ADGBQ8N7X0 1667 aa8.02□□□□□ -1.13
ATG4A-208ENST00000489247 SAMD9LQ8IVG5 1584 aa8.01□□□□□ -1.13
ATG4A-208ENST00000489247 KDM6BO15054 1643 aa8.01□□□□□ -1.13
ATG4A-208ENST00000489247 RRP7BPQ9NSQ0 103 aa8.01□□□□□ -1.13
ATG4A-208ENST00000489247 TTC37Q6PGP7 1564 aa8.01□□□□□ -1.13
ATG4A-208ENST00000489247 GCGRP47871 477 aa8□□□□□ -1.13
ATG4A-208ENST00000489247 PKDCCQ504Y2 493 aa8□□□□□ -1.13
ATG4A-208ENST00000489247 TJAP1Q5JTD0 557 aa8□□□□□ -1.13
ATG4A-208ENST00000489247 WDR7Q9Y4E6 1490 aa8□□□□□ -1.13
ATG4A-208ENST00000489247 ANKRD30BQ9BXX2 1392 aa7.99□□□□□ -1.13
ATG4A-208ENST00000489247 KDM4CQ9H3R0 1056 aa7.99□□□□□ -1.13
ATG4A-208ENST00000489247 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.99□□□□□ -1.13
ATG4A-208ENST00000489247 CHIC2Q9UKJ5 165 aa7.99□□□□□ -1.13
ATG4A-208ENST00000489247 ANKRD50Q9ULJ7 1429 aa7.99□□□□□ -1.13
ATG4A-208ENST00000489247 PZPP20742 1482 aa7.99□□□□□ -1.13
ATG4A-208ENST00000489247 CDC42BPBQ9Y5S2 1711 aa7.98□□□□□ -1.13
ATG4A-208ENST00000489247 ACTN4O43707 911 aaKnown RBP7.98□□□□□ -1.13
ATG4A-208ENST00000489247 PPP1R15AO75807 674 aaPredicted RBP7.98□□□□□ -1.13
ATG4A-208ENST00000489247 COPS2P61201 443 aa7.98□□□□□ -1.13
ATG4A-208ENST00000489247 INSM1Q01101 510 aaPredicted RBP7.98□□□□□ -1.13
ATG4A-208ENST00000489247 PUS10Q3MIT2 529 aaKnown RBP7.98□□□□□ -1.13
ATG4A-208ENST00000489247 KMT5BQ4FZB7 885 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms