RNA–Protein interactions for RNA: ENST00000488920.2

CCHCR1-215, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 3

Gene CCHCR1, Length 715 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-215ENST00000488920 TRPM3Q9HCF6 1732 aaPredicted RBP17.1■□□□□ 0.33
CCHCR1-215ENST00000488920 POLR3AO14802 1390 aaPredicted RBP17.1■□□□□ 0.33
CCHCR1-215ENST00000488920 TRIM26Q12899 539 aaPredicted RBP17.09■□□□□ 0.33
CCHCR1-215ENST00000488920 ROCK2O75116 1388 aaKnown RBP17.09■□□□□ 0.33
CCHCR1-215ENST00000488920 SEPT12Q8IYM1 358 aa17.08■□□□□ 0.32
CCHCR1-215ENST00000488920 ABTB2Q8N961 1025 aa17.07■□□□□ 0.32
CCHCR1-215ENST00000488920 PRDM11Q9NQV5 511 aa17.07■□□□□ 0.32
CCHCR1-215ENST00000488920 CABP1Q9NZU7 370 aa17.07■□□□□ 0.32
CCHCR1-215ENST00000488920 ALS2Q96Q42 1657 aa17.07■□□□□ 0.32
CCHCR1-215ENST00000488920 GLI3P10071 1580 aa17.06■□□□□ 0.32
CCHCR1-215ENST00000488920 PPIP5K1Q6PFW1 1433 aa17.06■□□□□ 0.32
CCHCR1-215ENST00000488920 ONECUT3O60422 494 aaPredicted RBP17.06■□□□□ 0.32
CCHCR1-215ENST00000488920 ZC3H6P61129 1189 aaKnown RBP17.06■□□□□ 0.32
CCHCR1-215ENST00000488920 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.05■□□□□ 0.32
CCHCR1-215ENST00000488920 EVC2Q86UK5 1308 aa17.05■□□□□ 0.32
CCHCR1-215ENST00000488920 CHRNA2Q15822 529 aa17.05■□□□□ 0.32
CCHCR1-215ENST00000488920 ABCA3Q99758 1704 aa17.04■□□□□ 0.32
CCHCR1-215ENST00000488920 KIAA0232Q92628 1395 aa17.04■□□□□ 0.32
CCHCR1-215ENST00000488920 A0A0G2JS52 829 aa17.04■□□□□ 0.32
CCHCR1-215ENST00000488920 MYT1Q01538 1121 aa17.04■□□□□ 0.32
CCHCR1-215ENST00000488920 ITSN1Q15811 1721 aa17.04■□□□□ 0.32
CCHCR1-215ENST00000488920 FAM98CQ17RN3 349 aaKnown RBP17.03■□□□□ 0.32
CCHCR1-215ENST00000488920 PLCH1Q4KWH8 1693 aa17.02■□□□□ 0.32
CCHCR1-215ENST00000488920 CCDC125Q86Z20 511 aa17.02■□□□□ 0.32
CCHCR1-215ENST00000488920 TRPM1Q7Z4N2 1603 aa17.02■□□□□ 0.31
CCHCR1-215ENST00000488920 TOPAZ1Q8N9V7 1692 aa17.01■□□□□ 0.31
CCHCR1-215ENST00000488920 KRT27Q7Z3Y8 459 aa17.01■□□□□ 0.31
CCHCR1-215ENST00000488920 NLRP13Q86W25 1043 aa17.01■□□□□ 0.31
CCHCR1-215ENST00000488920 CARD11Q9BXL7 1154 aa17.01■□□□□ 0.31
CCHCR1-215ENST00000488920 STRN4Q9NRL3 753 aa17.01■□□□□ 0.31
CCHCR1-215ENST00000488920 NWD2Q9ULI1 1742 aa17.01■□□□□ 0.31
CCHCR1-215ENST00000488920 TONSLQ96HA7 1378 aa17.01■□□□□ 0.31
CCHCR1-215ENST00000488920 QRICH2Q9H0J4 1663 aa17.01■□□□□ 0.31
CCHCR1-215ENST00000488920 SPATA31A5Q5VU36 1347 aa17■□□□□ 0.31
CCHCR1-215ENST00000488920 SPATA31A7Q8IWB4 1347 aa17■□□□□ 0.31
CCHCR1-215ENST00000488920 EP400Q96L91 3159 aa17■□□□□ 0.31
CCHCR1-215ENST00000488920 COL14A1Q05707 1796 aaKnown RBP16.99■□□□□ 0.31
CCHCR1-215ENST00000488920 GCP02774 474 aa16.98■□□□□ 0.31
CCHCR1-215ENST00000488920 EVA1CP58658 441 aa16.98■□□□□ 0.31
CCHCR1-215ENST00000488920 NLRP6P59044 892 aa16.98■□□□□ 0.31
CCHCR1-215ENST00000488920 USP19O94966 1318 aa16.97■□□□□ 0.31
CCHCR1-215ENST00000488920 USP6P35125 1406 aa16.96■□□□□ 0.31
CCHCR1-215ENST00000488920 CRYBG1Q9Y4K1 1723 aa16.96■□□□□ 0.31
CCHCR1-215ENST00000488920 BRD4O60885 1362 aaPredicted RBP16.96■□□□□ 0.31
CCHCR1-215ENST00000488920 SPATA31A1Q5TZJ5 1347 aa16.96■□□□□ 0.3
CCHCR1-215ENST00000488920 ZBTB7CA1YPR0 619 aa16.95■□□□□ 0.3
CCHCR1-215ENST00000488920 ZNF692Q9BU19 519 aaPredicted RBP16.95■□□□□ 0.3
CCHCR1-215ENST00000488920 USP35Q9P2H5 1018 aa16.95■□□□□ 0.3
CCHCR1-215ENST00000488920 NRAPQ86VF7 1730 aa16.95■□□□□ 0.3
CCHCR1-215ENST00000488920 SF3B2Q13435 895 aaKnown RBP16.94■□□□□ 0.3
CCHCR1-215ENST00000488920 FAM182BQ5T319 152 aa16.94■□□□□ 0.3
CCHCR1-215ENST00000488920 DEFB132Q7Z7B7 95 aa16.94■□□□□ 0.3
CCHCR1-215ENST00000488920 BLMP54132 1417 aaPredicted RBP16.94■□□□□ 0.3
CCHCR1-215ENST00000488920 CPDO75976 1380 aa16.93■□□□□ 0.3
CCHCR1-215ENST00000488920 LARP1Q6PKG0 1096 aaKnown RBP16.93■□□□□ 0.3
CCHCR1-215ENST00000488920 SSH2Q76I76 1423 aa16.93■□□□□ 0.3
CCHCR1-215ENST00000488920 TTC21BQ7Z4L5 1316 aa16.93■□□□□ 0.3
CCHCR1-215ENST00000488920 PHRF1Q9P1Y6 1649 aaKnown RBP16.92■□□□□ 0.3
CCHCR1-215ENST00000488920 BRWD3Q6RI45 1802 aa16.92■□□□□ 0.3
CCHCR1-215ENST00000488920 ZRANB1Q9UGI0 708 aa16.92■□□□□ 0.3
CCHCR1-215ENST00000488920 CAMTA1Q9Y6Y1 1673 aa16.91■□□□□ 0.3
CCHCR1-215ENST00000488920 NRKQ7Z2Y5 1582 aa16.9■□□□□ 0.3
CCHCR1-215ENST00000488920 TMC1Q8TDI8 760 aa16.9■□□□□ 0.3
CCHCR1-215ENST00000488920 SBNO2Q9Y2G9 1366 aa16.89■□□□□ 0.3
CCHCR1-215ENST00000488920 SOX12O15370 315 aa16.89■□□□□ 0.29
CCHCR1-215ENST00000488920 KTN1Q86UP2 1357 aaKnown RBP16.89■□□□□ 0.29
CCHCR1-215ENST00000488920 CPSF1Q10570 1443 aaKnown RBP16.88■□□□□ 0.29
CCHCR1-215ENST00000488920 BARGINQ6ZT62 677 aa16.88■□□□□ 0.29
CCHCR1-215ENST00000488920 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.88■□□□□ 0.29
CCHCR1-215ENST00000488920 TCP11L2Q8N4U5 519 aa16.88■□□□□ 0.29
CCHCR1-215ENST00000488920 SLC12A5Q9H2X9 1139 aa16.88■□□□□ 0.29
CCHCR1-215ENST00000488920 ST20-MTHFSA0A0A6YYL1 179 aa16.87■□□□□ 0.29
CCHCR1-215ENST00000488920 TTC21AQ8NDW8 1320 aa16.87■□□□□ 0.29
CCHCR1-215ENST00000488920 AXIN2Q9Y2T1 843 aa16.86■□□□□ 0.29
CCHCR1-215ENST00000488920 AATKQ6ZMQ8 1374 aa16.86■□□□□ 0.29
CCHCR1-215ENST00000488920 PDE3BQ13370 1112 aa16.85■□□□□ 0.29
CCHCR1-215ENST00000488920 ARHGEF25Q86VW2 580 aa16.85■□□□□ 0.29
CCHCR1-215ENST00000488920 KCNH5Q8NCM2 988 aa16.85■□□□□ 0.29
CCHCR1-215ENST00000488920 PCGF6Q9BYE7 350 aa16.85■□□□□ 0.29
CCHCR1-215ENST00000488920 BAG6P46379 1132 aa16.84■□□□□ 0.29
CCHCR1-215ENST00000488920 HDGFL2Q7Z4V5 671 aaPredicted RBP16.84■□□□□ 0.29
CCHCR1-215ENST00000488920 TESK2Q96S53 571 aa16.84■□□□□ 0.29
CCHCR1-215ENST00000488920 THRAP3Q9Y2W1 955 aaKnown RBP16.84■□□□□ 0.29
CCHCR1-215ENST00000488920 COL5A2P05997 1499 aaPredicted RBP16.84■□□□□ 0.29
CCHCR1-215ENST00000488920 SLIT3O75094 1523 aa16.84■□□□□ 0.29
CCHCR1-215ENST00000488920 THSD7AQ9UPZ6 1657 aa16.84■□□□□ 0.29
CCHCR1-215ENST00000488920 PIK3C2AO00443 1686 aa16.83■□□□□ 0.28
CCHCR1-215ENST00000488920 FAM196AQ6ZSG2 479 aa16.83■□□□□ 0.28
CCHCR1-215ENST00000488920 NME9Q86XW9 330 aa16.83■□□□□ 0.28
CCHCR1-215ENST00000488920 LMO7Q8WWI1 1683 aa16.83■□□□□ 0.28
CCHCR1-215ENST00000488920 TRIM37O94972 964 aa16.82■□□□□ 0.28
CCHCR1-215ENST00000488920 EN1Q05925 392 aaPredicted RBP16.82■□□□□ 0.28
CCHCR1-215ENST00000488920 TOM1L2Q6ZVM7 507 aa16.82■□□□□ 0.28
CCHCR1-215ENST00000488920 PUS7Q96PZ0 661 aaKnown RBP16.82■□□□□ 0.28
CCHCR1-215ENST00000488920 TERF2IPQ9NYB0 399 aa16.82■□□□□ 0.28
CCHCR1-215ENST00000488920 SRCAPQ6ZRS2 3230 aa16.81■□□□□ 0.28
CCHCR1-215ENST00000488920 CD163L1Q9NR16 1453 aa16.81■□□□□ 0.28
CCHCR1-215ENST00000488920 CRB1P82279 1406 aa16.8■□□□□ 0.28
CCHCR1-215ENST00000488920 CSB-PGBD3P0DP91 1061 aa16.79■□□□□ 0.28
CCHCR1-215ENST00000488920 AKAP12Q02952 1782 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms