RNA–Protein interactions for RNA: ENST00000488912.5

COL21A1-211, Transcript of collagen type XXI alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL21A1, Length 2,327 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1-211ENST00000488912 NCOA3Q9Y6Q9 1424 aa14.71□□□□□ -0.06
COL21A1-211ENST00000488912 NGDNQ8NEJ9 315 aaKnown RBP14.7□□□□□ -0.06
COL21A1-211ENST00000488912 SSH2Q76I76 1423 aa14.7□□□□□ -0.06
COL21A1-211ENST00000488912 LRRC7Q96NW7 1537 aa14.69□□□□□ -0.06
COL21A1-211ENST00000488912 TTC21BQ7Z4L5 1316 aa14.69□□□□□ -0.06
COL21A1-211ENST00000488912 DCCP43146 1447 aa14.69□□□□□ -0.06
COL21A1-211ENST00000488912 HNRNPUQ00839 825 aaKnown RBP eCLIP14.68□□□□□ -0.06
COL21A1-211ENST00000488912 PHF8Q9UPP1 1060 aa14.68□□□□□ -0.06
COL21A1-211ENST00000488912 ZRANB1Q9UGI0 708 aa14.67□□□□□ -0.06
COL21A1-211ENST00000488912 DMRT2Q9Y5R5 561 aa14.67□□□□□ -0.06
COL21A1-211ENST00000488912 ESCO1Q5FWF5 840 aa14.67□□□□□ -0.06
COL21A1-211ENST00000488912 C1orf167Q5SNV9 1468 aa14.67□□□□□ -0.06
COL21A1-211ENST00000488912 MAP2P11137 1827 aaKnown RBP14.67□□□□□ -0.06
COL21A1-211ENST00000488912 PIK3C2AO00443 1686 aa14.66□□□□□ -0.06
COL21A1-211ENST00000488912 MST1RQ04912 1400 aa14.66□□□□□ -0.06
COL21A1-211ENST00000488912 SHPRHQ149N8 1683 aa14.66□□□□□ -0.06
COL21A1-211ENST00000488912 MSH6P52701 1360 aa14.66□□□□□ -0.06
COL21A1-211ENST00000488912 ATF3P18847 181 aa14.65□□□□□ -0.06
COL21A1-211ENST00000488912 MTHFSP49914 203 aa14.65□□□□□ -0.06
COL21A1-211ENST00000488912 ORAI2Q96SN7 254 aa14.65□□□□□ -0.06
COL21A1-211ENST00000488912 KIF1AQ12756 1690 aa14.65□□□□□ -0.06
COL21A1-211ENST00000488912 OVOS2A0A0J9YW53 1432 aa14.65□□□□□ -0.06
COL21A1-211ENST00000488912 OVOS2Q6IE36 1432 aa14.65□□□□□ -0.06
COL21A1-211ENST00000488912 TTC21AQ8NDW8 1320 aa14.64□□□□□ -0.07
COL21A1-211ENST00000488912 COG3Q96JB2 828 aa14.64□□□□□ -0.07
COL21A1-211ENST00000488912 MARF1Q9Y4F3 1742 aaKnown RBP14.63□□□□□ -0.07
COL21A1-211ENST00000488912 FBLN1P23142 703 aa14.63□□□□□ -0.07
COL21A1-211ENST00000488912 CADPS2Q86UW7 1296 aa14.63□□□□□ -0.07
COL21A1-211ENST00000488912 WDR43Q15061 677 aaKnown RBP eCLIP14.62□□□□□ -0.07
COL21A1-211ENST00000488912 ADAMTS8Q9UP79 889 aa14.61□□□□□ -0.07
COL21A1-211ENST00000488912 USP54Q70EL1 1684 aa14.61□□□□□ -0.07
COL21A1-211ENST00000488912 BLMP54132 1417 aaPredicted RBP14.61□□□□□ -0.07
COL21A1-211ENST00000488912 COL3A1P02461 1466 aaPredicted RBP14.6□□□□□ -0.07
COL21A1-211ENST00000488912 AATKQ6ZMQ8 1374 aa14.6□□□□□ -0.07
COL21A1-211ENST00000488912 BCL11AQ9H165 835 aa14.6□□□□□ -0.07
COL21A1-211ENST00000488912 TRPM3Q9HCF6 1732 aaPredicted RBP14.6□□□□□ -0.07
COL21A1-211ENST00000488912 INSRP06213 1382 aa14.6□□□□□ -0.07
COL21A1-211ENST00000488912 FOXO3O43524 673 aa14.6□□□□□ -0.07
COL21A1-211ENST00000488912 PSME1Q06323 249 aa14.6□□□□□ -0.07
COL21A1-211ENST00000488912 CFAP53Q96M91 514 aa14.6□□□□□ -0.07
COL21A1-211ENST00000488912 POLKQ9UBT6 870 aa14.6□□□□□ -0.07
COL21A1-211ENST00000488912 USP31Q70CQ4 1352 aa14.59□□□□□ -0.07
COL21A1-211ENST00000488912 SENP3-EIF4A1A0A087X0R7 540 aa14.59□□□□□ -0.07
COL21A1-211ENST00000488912 PAK3O75914 559 aaPredicted RBP14.59□□□□□ -0.07
COL21A1-211ENST00000488912 SMG6Q86US8 1419 aaKnown RBP14.59□□□□□ -0.07
COL21A1-211ENST00000488912 XPCQ01831 940 aaPredicted RBP14.58□□□□□ -0.08
COL21A1-211ENST00000488912 ZBED9Q6R2W3 1325 aa14.58□□□□□ -0.08
COL21A1-211ENST00000488912 EMILIN1Q9Y6C2 1016 aa14.58□□□□□ -0.08
COL21A1-211ENST00000488912 PNPLA6Q8IY17 1366 aa14.57□□□□□ -0.08
COL21A1-211ENST00000488912 PPM1GO15355 546 aaPredicted RBP14.57□□□□□ -0.08
COL21A1-211ENST00000488912 RRS1Q15050 365 aaKnown RBP14.57□□□□□ -0.08
COL21A1-211ENST00000488912 ABTB2Q8N961 1025 aa14.57□□□□□ -0.08
COL21A1-211ENST00000488912 CDK12Q9NYV4 1490 aaPredicted RBP14.57□□□□□ -0.08
COL21A1-211ENST00000488912 NLRP6P59044 892 aa14.57□□□□□ -0.08
COL21A1-211ENST00000488912 NUTM2GQ5VZR2 741 aa14.57□□□□□ -0.08
COL21A1-211ENST00000488912 LTBP4Q8N2S1 1624 aa14.56□□□□□ -0.08
COL21A1-211ENST00000488912 PEAK1Q9H792 1746 aa14.56□□□□□ -0.08
COL21A1-211ENST00000488912 SOX12O15370 315 aa14.55□□□□□ -0.08
COL21A1-211ENST00000488912 KRT28Q7Z3Y7 464 aa14.54□□□□□ -0.08
COL21A1-211ENST00000488912 DDX17Q92841 729 aaKnown RBP14.54□□□□□ -0.08
COL21A1-211ENST00000488912 ALS2Q96Q42 1657 aa14.54□□□□□ -0.08
COL21A1-211ENST00000488912 CCDC146Q8IYE0 955 aa14.53□□□□□ -0.08
COL21A1-211ENST00000488912 BRINP3Q76B58 766 aa14.53□□□□□ -0.08
COL21A1-211ENST00000488912 SLAIN2Q9P270 581 aa14.53□□□□□ -0.08
COL21A1-211ENST00000488912 DIAPH1O60610 1272 aaKnown RBP14.52□□□□□ -0.08
COL21A1-211ENST00000488912 LTN1O94822 1766 aa14.52□□□□□ -0.09
COL21A1-211ENST00000488912 NPHP3Q7Z494 1330 aa14.52□□□□□ -0.09
COL21A1-211ENST00000488912 PXDNQ92626 1479 aa14.51□□□□□ -0.09
COL21A1-211ENST00000488912 U2AF1L5P0DN76 240 aaPredicted RBP14.51□□□□□ -0.09
COL21A1-211ENST00000488912 U2AF1Q01081 240 aaKnown RBP eCLIP14.51□□□□□ -0.09
COL21A1-211ENST00000488912 SALL2Q9Y467 1007 aaPredicted RBP14.51□□□□□ -0.09
COL21A1-211ENST00000488912 NFAT5O94916 1531 aa14.51□□□□□ -0.09
COL21A1-211ENST00000488912 MAP3K19Q56UN5 1328 aa14.51□□□□□ -0.09
COL21A1-211ENST00000488912 U2SURPO15042 1029 aaKnown RBP14.5□□□□□ -0.09
COL21A1-211ENST00000488912 NUDCQ9Y266 331 aa14.5□□□□□ -0.09
COL21A1-211ENST00000488912 LMOD2Q6P5Q4 547 aa14.49□□□□□ -0.09
COL21A1-211ENST00000488912 SLIT3O75094 1523 aa14.49□□□□□ -0.09
COL21A1-211ENST00000488912 SBNO1A3KN83 1393 aa14.48□□□□□ -0.09
COL21A1-211ENST00000488912 NHSL1Q5SYE7 1610 aa14.48□□□□□ -0.09
COL21A1-211ENST00000488912 IL13P35225 146 aa14.48□□□□□ -0.09
COL21A1-211ENST00000488912 AEBP2Q6ZN18 517 aaPredicted RBP14.48□□□□□ -0.09
COL21A1-211ENST00000488912 FLT4P35916 1363 aa14.48□□□□□ -0.09
COL21A1-211ENST00000488912 IQSEC2Q5JU85 1478 aa14.48□□□□□ -0.09
COL21A1-211ENST00000488912 TNS3Q68CZ2 1445 aa14.47□□□□□ -0.09
COL21A1-211ENST00000488912 APAF1O14727 1248 aa14.47□□□□□ -0.09
COL21A1-211ENST00000488912 USP19O94966 1318 aa14.47□□□□□ -0.09
COL21A1-211ENST00000488912 MED1Q15648 1581 aaPredicted RBP14.47□□□□□ -0.09
COL21A1-211ENST00000488912 HSP90AB2PQ58FF8 381 aa14.47□□□□□ -0.09
COL21A1-211ENST00000488912 PLEKHG5O94827 1062 aa14.46□□□□□ -0.09
COL21A1-211ENST00000488912 RUNDC1Q96C34 613 aa14.46□□□□□ -0.09
COL21A1-211ENST00000488912 RGPD1P0DJD0 1748 aa14.46□□□□□ -0.09
COL21A1-211ENST00000488912 PHRF1Q9P1Y6 1649 aaKnown RBP14.46□□□□□ -0.1
COL21A1-211ENST00000488912 AMPHP49418 695 aa14.46□□□□□ -0.1
COL21A1-211ENST00000488912 EIF4A2Q14240 407 aaKnown RBP14.46□□□□□ -0.1
COL21A1-211ENST00000488912 CRYBG1Q9Y4K1 1723 aa14.45□□□□□ -0.1
COL21A1-211ENST00000488912 KCNH5Q8NCM2 988 aa14.45□□□□□ -0.1
COL21A1-211ENST00000488912 ROBO1Q9Y6N7 1651 aa14.45□□□□□ -0.1
COL21A1-211ENST00000488912 KIF24Q5T7B8 1368 aa14.45□□□□□ -0.1
COL21A1-211ENST00000488912 SPATA31A3Q5VYP0 1347 aa14.44□□□□□ -0.1
COL21A1-211ENST00000488912 GCP02774 474 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms